OMU
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
N1 | C2 | sing | 1.34Å | 1.39Å | |
N1 | C6 | sing | 1.37Å | 1.37Å | |
N1 | C1' | sing | 1.46Å | 1.48Å | |
C2 | N3 | sing | 1.35Å | 1.38Å | |
C2 | O2 | doub | 1.22Å | 1.23Å | |
N3 | C4 | sing | 1.35Å | 1.38Å | |
N3 | HN3 | sing | 0.97Å | 1.02Å | |
C4 | C5 | sing | 1.41Å | 1.43Å | |
C4 | O4 | doub | 1.22Å | 1.21Å | |
C5 | C6 | doub | 1.35Å | 1.36Å | |
C5 | H5 | sing | 1.08Å | 1.10Å | |
C6 | H6 | sing | 1.08Å | 1.10Å | |
C1' | C2' | sing | 1.55Å | 1.49Å | |
C1' | O4' | sing | 1.44Å | 1.45Å | |
C1' | H1' | sing | 1.09Å | 1.11Å | |
C2' | O2' | sing | 1.43Å | 1.44Å | |
C2' | C3' | sing | 1.55Å | 1.49Å | |
C2' | H2' | sing | 1.09Å | 1.12Å | |
O2' | CM2 | sing | 1.43Å | 1.39Å | |
CM2 | HM21 | sing | 1.09Å | 1.11Å | |
CM2 | HM22 | sing | 1.09Å | 1.12Å | |
CM2 | HM23 | sing | 1.09Å | 1.12Å | |
C3' | C4' | sing | 1.54Å | 1.51Å | |
C3' | O3' | sing | 1.43Å | 1.43Å | |
C3' | H3' | sing | 1.09Å | 1.12Å | |
C4' | O4' | sing | 1.44Å | 1.44Å | |
C4' | C5' | sing | 1.53Å | 1.53Å | |
C4' | H4' | sing | 1.09Å | 1.11Å | |
O3' | HO3' | sing | 0.97Å | 0.95Å | |
C5' | O5' | sing | 1.43Å | 1.43Å | |
C5' | H5' | sing | 1.09Å | 1.11Å | |
C5' | H5'' | sing | 1.09Å | 1.12Å | |
O5' | P | sing | 1.61Å | 1.61Å | |
P | OP1 | doub | 1.48Å | 1.48Å | |
P | OP2 | sing | 1.61Å | 1.48Å | |
P | OP3 | sing | 1.61Å | 1.62Å | |
OP2 | HOP2 | sing | 0.97Å | 0.95Å | |
OP3 | HOP3 | sing | 0.97Å | 0.95Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
C2 | N1 | C6 | 121.4° | 120.6° |
C2 | N1 | C1' | 117.4° | 119.7° |
N1 | C2 | N3 | 116.1° | 121.0° |
N1 | C2 | O2 | 122.3° | 119.5° |
C6 | N1 | C1' | 121.2° | 119.7° |
N1 | C6 | C5 | 121.0° | 119.7° |
N1 | C6 | H6 | 119.7° | 120.2° |
N1 | C1' | C2' | 110.8° | 110.8° |
N1 | C1' | O4' | 111.5° | 110.6° |
N1 | C1' | H1' | 106.3° | 110.5° |
N3 | C2 | O2 | 121.6° | 119.5° |
C2 | N3 | C4 | 126.1° | 120.2° |
C2 | N3 | HN3 | 117.1° | 119.9° |
C4 | N3 | HN3 | 116.8° | 119.9° |
N3 | C4 | C5 | 114.7° | 119.4° |
N3 | C4 | O4 | 120.8° | 120.3° |
C5 | C4 | O4 | 124.5° | 120.3° |
C4 | C5 | C6 | 120.8° | 119.1° |
C4 | C5 | H5 | 122.0° | 120.5° |
C6 | C5 | H5 | 117.2° | 120.4° |
C5 | C6 | H6 | 119.3° | 120.1° |
C2' | C1' | O4' | 107.1° | 103.5° |
C2' | C1' | H1' | 110.8° | 110.6° |
C1' | C2' | O2' | 111.0° | 110.9° |
C1' | C2' | C3' | 103.7° | 102.2° |
C1' | C2' | H2' | 112.8° | 110.9° |
O4' | C1' | H1' | 110.2° | 110.6° |
C1' | O4' | C4' | 108.5° | 107.0° |
O2' | C2' | C3' | 111.1° | 110.9° |
O2' | C2' | H2' | 105.7° | 110.8° |
C2' | O2' | CM2 | 108.7° | 106.8° |
C3' | C2' | H2' | 112.7° | 110.9° |
C2' | C3' | C4' | 103.0° | 104.2° |
C2' | C3' | O3' | 112.5° | 110.5° |
C2' | C3' | H3' | 112.9° | 110.5° |
O2' | CM2 | HM21 | 108.8° | 109.5° |
O2' | CM2 | HM22 | 112.5° | 109.5° |
O2' | CM2 | HM23 | 112.4° | 109.5° |
HM21 | CM2 | HM22 | 112.5° | 109.4° |
HM21 | CM2 | HM23 | 112.4° | 109.5° |
HM22 | CM2 | HM23 | 97.9° | 109.5° |
C4' | C3' | O3' | 112.5° | 110.6° |
C4' | C3' | H3' | 112.8° | 110.5° |
C3' | C4' | O4' | 106.0° | 107.3° |
C3' | C4' | C5' | 111.7° | 109.9° |
C3' | C4' | H4' | 111.3° | 109.9° |
O3' | C3' | H3' | 103.5° | 110.4° |
C3' | O3' | HO3' | 112.5° | 106.8° |
O4' | C4' | C5' | 112.2° | 110.0° |
O4' | C4' | H4' | 110.9° | 109.8° |
C5' | C4' | H4' | 104.9° | 109.9° |
C4' | C5' | O5' | 112.6° | 109.5° |
C4' | C5' | H5' | 111.1° | 109.5° |
C4' | C5' | H5'' | 111.1° | 109.5° |
O5' | C5' | H5' | 111.1° | 109.4° |
O5' | C5' | H5'' | 111.0° | 109.5° |
C5' | O5' | P | 119.8° | 106.8° |
H5' | C5' | H5'' | 99.3° | 109.5° |
O5' | P | OP1 | 108.3° | 109.5° |
O5' | P | OP2 | 108.1° | 109.5° |
O5' | P | OP3 | 103.1° | 109.5° |
OP1 | P | OP2 | 119.8° | 109.4° |
OP1 | P | OP3 | 107.9° | 109.5° |
OP2 | P | OP3 | 108.4° | 109.5° |
P | OP2 | HOP2 | 108.1° | 106.9° |
P | OP3 | HOP3 | 103.0° | 106.8° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
C2 | N1 | C6 | C1' | 179.8° | 179.7° |
N1 | C2 | N3 | O2 | 179.1° | 179.4° |
N1 | C2 | N3 | C4 | 0.2° | 0.6° |
N1 | C2 | N3 | HN3 | 179.9° | 179.7° |
C2 | N1 | C6 | C5 | 0.1° | 0.3° |
C2 | N1 | C6 | H6 | 179.9° | 179.7° |
C2 | N1 | C1' | C2' | 82.3° | 55.9° |
C2 | N1 | C1' | O4' | 158.4° | 58.3° |
C2 | N1 | C1' | H1' | 38.3° | 178.9° |
C6 | N1 | C2 | N3 | 0.2° | 0.6° |
C6 | N1 | C2 | O2 | 178.9° | 180.0° |
N1 | C6 | C5 | C4 | 0.4° | 0.0° |
N1 | C6 | C5 | H6 | 180.0° | 180.0° |
N1 | C6 | C5 | H5 | 179.6° | 179.9° |
C6 | N1 | C1' | C2' | 97.5° | 124.4° |
C6 | N1 | C1' | O4' | 21.8° | 121.4° |
C6 | N1 | C1' | H1' | 142.0° | 1.4° |
C1' | N1 | C2 | N3 | 179.9° | 179.7° |
C1' | N1 | C2 | O2 | 0.9° | 0.3° |
C1' | N1 | C6 | C5 | 179.7° | 180.0° |
C1' | N1 | C6 | H6 | 0.3° | 0.0° |
N1 | C1' | C2' | O4' | 121.9° | 118.6° |
N1 | C1' | C2' | H1' | 117.8° | 123.0° |
N1 | C1' | O4' | H1' | 117.9° | 122.8° |
N1 | C1' | C2' | O2' | 143.9° | 86.2° |
N1 | C1' | C2' | C3' | 96.8° | 155.6° |
N1 | C1' | C2' | H2' | 25.5° | 37.3° |
N1 | C1' | O4' | C4' | 115.5° | 158.7° |
C2 | N3 | C4 | HN3 | 180.0° | 179.7° |
C2 | N3 | C4 | C5 | 0.1° | 0.3° |
C2 | N3 | C4 | O4 | 179.5° | 179.7° |
O2 | C2 | N3 | C4 | 178.9° | 180.0° |
O2 | C2 | N3 | HN3 | 1.1° | 0.3° |
N3 | C4 | C5 | O4 | 179.5° | 180.0° |
N3 | C4 | C5 | C6 | 0.3° | 0.0° |
N3 | C4 | C5 | H5 | 179.6° | 179.9° |
HN3 | N3 | C4 | C5 | 179.9° | 180.0° |
HN3 | N3 | C4 | O4 | 0.5° | 0.0° |
C4 | C5 | C6 | H5 | 180.0° | 180.0° |
C4 | C5 | C6 | H6 | 179.7° | 180.0° |
O4 | C4 | C5 | C6 | 179.2° | 180.0° |
O4 | C4 | C5 | H5 | 0.8° | 0.0° |
H5 | C5 | C6 | H6 | 0.3° | 0.1° |
C2' | C1' | O4' | H1' | 120.7° | 118.5° |
C1' | C2' | O2' | C3' | 114.8° | 112.8° |
C1' | C2' | O2' | H2' | 122.6° | 123.6° |
C1' | C2' | C3' | H2' | 122.3° | 118.3° |
C1' | C2' | O2' | CM2 | 78.2° | 152.9° |
C1' | C2' | C3' | C4' | 33.7° | 20.9° |
C1' | C2' | C3' | O3' | 155.1° | 98.0° |
C1' | C2' | C3' | H3' | 88.3° | 139.6° |
C2' | C1' | O4' | C4' | 5.9° | 40.0° |
O4' | C1' | C2' | O2' | 94.2° | 155.2° |
O4' | C1' | C2' | C3' | 25.1° | 37.0° |
O4' | C1' | C2' | H2' | 147.4° | 81.3° |
C1' | O4' | C4' | C3' | 15.6° | 26.4° |
C1' | O4' | C4' | C5' | 137.8° | 146.0° |
C1' | O4' | C4' | H4' | 105.3° | 93.0° |
H1' | C1' | C2' | O2' | 26.1° | 36.8° |
H1' | C1' | C2' | C3' | 145.4° | 81.4° |
H1' | C1' | C2' | H2' | 92.3° | 160.3° |
H1' | C1' | O4' | C4' | 126.6° | 78.5° |
O2' | C2' | C3' | H2' | 118.4° | 123.5° |
C2' | O2' | CM2 | HM21 | 180.0° | 180.0° |
C2' | O2' | CM2 | HM22 | 54.7° | 60.0° |
C2' | O2' | CM2 | HM23 | 54.8° | 60.0° |
O2' | C2' | C3' | C4' | 85.6° | 139.1° |
O2' | C2' | C3' | O3' | 35.8° | 20.2° |
O2' | C2' | C3' | H3' | 152.4° | 102.2° |
C3' | C2' | O2' | CM2 | 166.9° | 94.3° |
C2' | C3' | C4' | O3' | 121.3° | 118.8° |
C2' | C3' | C4' | H3' | 122.0° | 118.7° |
C2' | C3' | O3' | H3' | 122.1° | 122.5° |
C2' | C3' | C4' | O4' | 30.8° | 2.0° |
C2' | C3' | C4' | C5' | 153.3° | 121.6° |
C2' | C3' | C4' | H4' | 89.8° | 117.4° |
C2' | C3' | O3' | HO3' | 180.0° | 180.0° |
H2' | C2' | O2' | CM2 | 44.4° | 29.3° |
H2' | C2' | C3' | C4' | 156.0° | 97.4° |
H2' | C2' | C3' | O3' | 82.6° | 143.8° |
H2' | C2' | C3' | H3' | 34.0° | 21.3° |
O2' | CM2 | HM21 | HM22 | 125.3° | 120.0° |
O2' | CM2 | HM21 | HM23 | 125.2° | 120.1° |
O2' | CM2 | HM22 | HM23 | 118.4° | 120.0° |
HM21 | CM2 | HM22 | HM23 | 118.4° | 120.0° |
C4' | C3' | O3' | H3' | 122.1° | 122.6° |
C3' | C4' | O4' | C5' | 122.2° | 119.5° |
C3' | C4' | O4' | H4' | 120.9° | 119.4° |
C3' | C4' | C5' | H4' | 120.7° | 121.1° |
C4' | C3' | O3' | HO3' | 64.2° | 65.1° |
C3' | C4' | C5' | O5' | 53.6° | 180.0° |
C3' | C4' | C5' | H5' | 178.9° | 60.0° |
C3' | C4' | C5' | H5'' | 71.6° | 60.0° |
O3' | C3' | C4' | O4' | 152.1° | 120.8° |
O3' | C3' | C4' | C5' | 85.4° | 119.6° |
O3' | C3' | C4' | H4' | 31.5° | 1.4° |
H3' | C3' | C4' | O4' | 91.2° | 116.7° |
H3' | C3' | C4' | C5' | 31.2° | 2.9° |
H3' | C3' | C4' | H4' | 148.2° | 123.9° |
H3' | C3' | O3' | HO3' | 57.9° | 57.4° |
O4' | C4' | C5' | H4' | 120.5° | 121.0° |
O4' | C4' | C5' | O5' | 65.2° | 62.1° |
O4' | C4' | C5' | H5' | 60.1° | 177.9° |
O4' | C4' | C5' | H5'' | 169.6° | 57.9° |
C4' | C5' | O5' | H5' | 125.3° | 120.0° |
C4' | C5' | O5' | H5'' | 125.3° | 120.0° |
C4' | C5' | H5' | H5'' | 117.0° | 120.0° |
C4' | C5' | O5' | P | 166.0° | 180.0° |
H4' | C4' | C5' | O5' | 174.3° | 58.9° |
H4' | C4' | C5' | H5' | 60.4° | 61.0° |
H4' | C4' | C5' | H5'' | 49.1° | 178.9° |
O5' | C5' | H5' | H5'' | 116.9° | 120.0° |
C5' | O5' | P | OP1 | 41.0° | 60.0° |
C5' | O5' | P | OP2 | 172.2° | 179.9° |
C5' | O5' | P | OP3 | 73.2° | 60.0° |
H5' | C5' | O5' | P | 68.8° | 60.0° |
H5'' | C5' | O5' | P | 40.7° | 60.0° |
O5' | P | OP1 | OP2 | 124.5° | 120.0° |
O5' | P | OP1 | OP3 | 110.9° | 120.0° |
O5' | P | OP2 | OP3 | 111.0° | 120.0° |
O5' | P | OP2 | HOP2 | 180.0° | 180.0° |
O5' | P | OP3 | HOP3 | 180.0° | 60.0° |
OP1 | P | OP2 | OP3 | 124.4° | 120.0° |
OP1 | P | OP2 | HOP2 | 55.4° | 60.0° |
OP1 | P | OP3 | HOP3 | 65.6° | 180.0° |
OP2 | P | OP3 | HOP3 | 65.6° | 60.0° |
OP3 | P | OP2 | HOP2 | 69.0° | 59.9° |