OMP
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| P | O1P | doub | 1.48Å | 1.51Å | |
| P | O2P | sing | 1.61Å | 1.48Å | |
| P | O3P | sing | 1.61Å | 1.61Å | |
| P | O5' | sing | 1.61Å | 1.61Å | |
| O2P | HOP2 | sing | 0.97Å | 0.95Å | |
| O3P | HOP3 | sing | 0.97Å | 0.95Å | |
| O5' | C5' | sing | 1.43Å | 1.43Å | |
| C5' | C4' | sing | 1.53Å | 1.51Å | |
| C5' | H5'1 | sing | 1.09Å | 1.10Å | |
| C5' | H5'2 | sing | 1.09Å | 1.10Å | |
| C4' | O4' | sing | 1.44Å | 1.43Å | |
| C4' | C3' | sing | 1.54Å | 1.51Å | |
| C4' | H4' | sing | 1.09Å | 1.10Å | |
| O4' | C1' | sing | 1.44Å | 1.39Å | |
| C3' | C2' | sing | 1.55Å | 1.52Å | |
| C3' | O3' | sing | 1.43Å | 1.43Å | |
| C3' | H3' | sing | 1.09Å | 1.10Å | |
| O3' | HO3' | sing | 0.97Å | 0.95Å | |
| C2' | C1' | sing | 1.55Å | 1.51Å | |
| C2' | O2' | sing | 1.43Å | 1.43Å | |
| C2' | H2' | sing | 1.09Å | 1.10Å | |
| O2' | HO2' | sing | 0.97Å | 0.95Å | |
| C1' | N1 | sing | 1.47Å | 1.46Å | |
| C1' | H1' | sing | 1.09Å | 1.10Å | |
| N1 | C2 | sing | 1.34Å | 1.39Å | |
| N1 | C6 | sing | 1.38Å | 1.43Å | |
| C2 | N3 | sing | 1.34Å | 1.38Å | |
| C2 | O2 | doub | 1.22Å | 1.21Å | |
| N3 | C4 | sing | 1.35Å | 1.40Å | |
| N3 | HN3 | sing | 0.97Å | 1.00Å | |
| C4 | C5 | sing | 1.47Å | 1.44Å | |
| C4 | O4 | doub | 1.22Å | 1.22Å | |
| C5 | C6 | doub | 1.36Å | 1.34Å | |
| C5 | H5 | sing | 1.08Å | 1.08Å | |
| C6 | C7 | sing | 1.48Å | 1.47Å | |
| C7 | O71 | doub | 1.21Å | 1.25Å | |
| C7 | O72 | sing | 1.35Å | 1.26Å | |
| O72 | HO7 | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O1P | P | O2P | 111.1° | 109.5° |
| O1P | P | O3P | 112.8° | 109.5° |
| O1P | P | O5' | 112.0° | 109.5° |
| O2P | P | O3P | 108.4° | 109.4° |
| O2P | P | O5' | 104.8° | 109.5° |
| P | O2P | HOP2 | 109.5° | 113.9° |
| O3P | P | O5' | 107.5° | 109.5° |
| P | O3P | HOP3 | 109.5° | 114.0° |
| P | O5' | C5' | 122.6° | 123.0° |
| O5' | C5' | C4' | 106.5° | 109.5° |
| O5' | C5' | H5'1 | 110.5° | 109.5° |
| O5' | C5' | H5'2 | 111.1° | 109.4° |
| C4' | C5' | H5'1 | 110.4° | 109.5° |
| C4' | C5' | H5'2 | 111.1° | 109.5° |
| C5' | C4' | O4' | 109.3° | 109.9° |
| C5' | C4' | C3' | 119.4° | 109.9° |
| C5' | C4' | H4' | 101.3° | 109.9° |
| H5'1 | C5' | H5'2 | 107.3° | 109.4° |
| O4' | C4' | C3' | 105.2° | 107.3° |
| O4' | C4' | H4' | 116.5° | 109.9° |
| C4' | O4' | C1' | 111.1° | 107.0° |
| C3' | C4' | H4' | 105.7° | 110.0° |
| C4' | C3' | C2' | 102.2° | 104.2° |
| C4' | C3' | O3' | 112.0° | 110.5° |
| C4' | C3' | H3' | 112.8° | 110.5° |
| O4' | C1' | C2' | 106.7° | 103.5° |
| O4' | C1' | N1 | 112.6° | 110.6° |
| O4' | C1' | H1' | 113.9° | 110.7° |
| C2' | C3' | O3' | 110.0° | 110.5° |
| C2' | C3' | H3' | 114.7° | 110.4° |
| C3' | C2' | C1' | 102.2° | 102.1° |
| C3' | C2' | O2' | 114.4° | 110.9° |
| C3' | C2' | H2' | 112.5° | 110.9° |
| O3' | C3' | H3' | 105.4° | 110.6° |
| C3' | O3' | HO3' | 109.5° | 114.0° |
| C1' | C2' | O2' | 113.3° | 110.9° |
| C1' | C2' | H2' | 113.7° | 110.9° |
| C2' | C1' | N1 | 120.1° | 110.6° |
| C2' | C1' | H1' | 105.1° | 110.7° |
| O2' | C2' | H2' | 101.2° | 110.9° |
| C2' | O2' | HO2' | 109.5° | 114.0° |
| N1 | C1' | H1' | 98.1° | 110.7° |
| C1' | N1 | C2 | 117.8° | 119.4° |
| C1' | N1 | C6 | 121.5° | 119.4° |
| C2 | N1 | C6 | 120.7° | 121.2° |
| N1 | C2 | N3 | 116.1° | 121.7° |
| N1 | C2 | O2 | 120.9° | 119.1° |
| N1 | C6 | C5 | 120.9° | 119.4° |
| N1 | C6 | C7 | 123.9° | 120.3° |
| N3 | C2 | O2 | 122.9° | 119.2° |
| C2 | N3 | C4 | 126.5° | 120.5° |
| C2 | N3 | HN3 | 116.8° | 119.7° |
| C4 | N3 | HN3 | 116.7° | 119.8° |
| N3 | C4 | C5 | 114.8° | 118.8° |
| N3 | C4 | O4 | 117.7° | 120.6° |
| C5 | C4 | O4 | 127.5° | 120.6° |
| C4 | C5 | C6 | 121.0° | 118.4° |
| C4 | C5 | H5 | 119.5° | 120.8° |
| C6 | C5 | H5 | 119.5° | 120.8° |
| C5 | C6 | C7 | 113.6° | 120.3° |
| C6 | C7 | O71 | 119.2° | 120.0° |
| C6 | C7 | O72 | 121.2° | 120.0° |
| O71 | C7 | O72 | 119.5° | 119.9° |
| C7 | O72 | HO7 | 109.5° | 117.1° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O1P | P | O2P | O3P | 124.4° | 120.0° |
| O1P | P | O2P | O5' | 121.1° | 120.0° |
| O1P | P | O3P | O5' | 123.9° | 120.0° |
| O1P | P | O2P | HOP2 | 176.8° | 59.9° |
| O1P | P | O3P | HOP3 | 69.3° | 180.0° |
| O1P | P | O5' | C5' | 51.9° | 55.0° |
| O2P | P | O3P | O5' | 112.7° | 120.0° |
| O2P | P | O3P | HOP3 | 54.1° | 60.0° |
| O2P | P | O5' | C5' | 172.3° | 175.0° |
| O3P | P | O2P | HOP2 | 58.8° | 60.0° |
| O3P | P | O5' | C5' | 72.6° | 65.0° |
| O5' | P | O2P | HOP2 | 55.7° | 180.0° |
| O5' | P | O3P | HOP3 | 166.8° | 59.9° |
| P | O5' | C5' | C4' | 175.9° | 180.0° |
| P | O5' | C5' | H5'1 | 64.1° | 60.0° |
| P | O5' | C5' | H5'2 | 54.8° | 60.0° |
| O5' | C5' | C4' | H5'1 | 120.0° | 120.0° |
| O5' | C5' | C4' | H5'2 | 121.1° | 120.0° |
| O5' | C5' | H5'1 | H5'2 | 121.2° | 119.9° |
| O5' | C5' | C4' | O4' | 176.2° | 66.5° |
| O5' | C5' | C4' | C3' | 55.2° | 175.7° |
| O5' | C5' | C4' | H4' | 60.3° | 54.5° |
| C4' | C5' | H5'1 | H5'2 | 121.2° | 120.0° |
| C5' | C4' | O4' | C3' | 129.3° | 119.4° |
| C5' | C4' | O4' | H4' | 114.0° | 121.1° |
| C5' | C4' | C3' | H4' | 113.1° | 121.1° |
| C5' | C4' | O4' | C1' | 114.3° | 146.0° |
| C5' | C4' | C3' | C2' | 92.0° | 121.4° |
| C5' | C4' | C3' | O3' | 150.4° | 119.9° |
| C5' | C4' | C3' | H3' | 31.7° | 2.8° |
| H5'1 | C5' | C4' | O4' | 63.8° | 53.5° |
| H5'1 | C5' | C4' | C3' | 175.2° | 64.3° |
| H5'1 | C5' | C4' | H4' | 59.7° | 174.5° |
| H5'2 | C5' | C4' | O4' | 55.1° | 173.5° |
| H5'2 | C5' | C4' | C3' | 65.9° | 55.7° |
| H5'2 | C5' | C4' | H4' | 178.6° | 65.4° |
| O4' | C4' | C3' | H4' | 123.8° | 119.5° |
| O4' | C4' | C3' | C2' | 31.1° | 2.0° |
| O4' | C4' | C3' | O3' | 86.6° | 120.7° |
| O4' | C4' | C3' | H3' | 154.8° | 116.6° |
| C4' | O4' | C1' | C2' | 7.8° | 40.1° |
| C4' | O4' | C1' | N1 | 141.6° | 158.6° |
| C4' | O4' | C1' | H1' | 107.8° | 78.4° |
| C3' | C4' | O4' | C1' | 15.0° | 26.6° |
| C4' | C3' | C2' | O3' | 119.0° | 118.7° |
| C4' | C3' | C2' | H3' | 122.4° | 118.6° |
| C4' | C3' | O3' | H3' | 123.0° | 122.6° |
| C4' | C3' | O3' | HO3' | 35.8° | 180.0° |
| C4' | C3' | C2' | C1' | 34.7° | 20.9° |
| C4' | C3' | C2' | O2' | 157.5° | 139.1° |
| C4' | C3' | C2' | H2' | 87.6° | 97.3° |
| H4' | C4' | O4' | C1' | 131.7° | 93.0° |
| H4' | C4' | C3' | C2' | 154.9° | 117.5° |
| H4' | C4' | C3' | O3' | 37.3° | 1.2° |
| H4' | C4' | C3' | H3' | 81.4° | 123.9° |
| O4' | C1' | C2' | C3' | 27.0° | 37.1° |
| O4' | C1' | C2' | N1 | 129.7° | 118.4° |
| O4' | C1' | C2' | H1' | 121.3° | 118.6° |
| O4' | C1' | C2' | O2' | 150.6° | 155.3° |
| O4' | C1' | C2' | H2' | 94.6° | 81.1° |
| O4' | C1' | N1 | H1' | 120.2° | 123.0° |
| O4' | C1' | N1 | C2 | 67.7° | 50.5° |
| O4' | C1' | N1 | C6 | 112.5° | 129.7° |
| C2' | C3' | O3' | H3' | 124.2° | 122.6° |
| C2' | C3' | O3' | HO3' | 77.1° | 65.3° |
| C3' | C2' | C1' | O2' | 123.6° | 118.1° |
| C3' | C2' | C1' | H2' | 121.5° | 118.2° |
| C3' | C2' | O2' | H2' | 121.3° | 123.7° |
| C3' | C2' | O2' | HO2' | 96.7° | 61.5° |
| C3' | C2' | C1' | N1 | 156.7° | 155.5° |
| C3' | C2' | C1' | H1' | 94.3° | 81.5° |
| O3' | C3' | C2' | C1' | 84.3° | 97.8° |
| O3' | C3' | C2' | O2' | 38.5° | 20.4° |
| O3' | C3' | C2' | H2' | 153.3° | 144.0° |
| H3' | C3' | O3' | HO3' | 158.7° | 57.3° |
| H3' | C3' | C2' | C1' | 157.1° | 139.5° |
| H3' | C3' | C2' | O2' | 80.1° | 102.3° |
| H3' | C3' | C2' | H2' | 34.8° | 21.3° |
| C1' | C2' | O2' | H2' | 122.1° | 123.7° |
| C1' | C2' | O2' | HO2' | 19.9° | 174.2° |
| C2' | C1' | N1 | H1' | 112.7° | 123.0° |
| C2' | C1' | N1 | C2 | 59.3° | 63.5° |
| C2' | C1' | N1 | C6 | 120.4° | 116.3° |
| O2' | C2' | C1' | N1 | 79.7° | 86.3° |
| O2' | C2' | C1' | H1' | 29.3° | 36.7° |
| H2' | C2' | O2' | HO2' | 142.0° | 62.2° |
| H2' | C2' | C1' | N1 | 35.1° | 37.3° |
| H2' | C2' | C1' | H1' | 144.1° | 160.3° |
| C1' | N1 | C2 | C6 | 179.8° | 179.7° |
| C1' | N1 | C2 | N3 | 179.5° | 180.0° |
| C1' | N1 | C2 | O2 | 0.3° | 0.0° |
| C1' | N1 | C6 | C5 | 179.6° | 179.7° |
| C1' | N1 | C6 | C7 | 16.1° | 0.0° |
| H1' | C1' | N1 | C2 | 172.1° | 173.6° |
| H1' | C1' | N1 | C6 | 7.7° | 6.7° |
| N1 | C2 | N3 | O2 | 179.8° | 180.0° |
| N1 | C2 | N3 | C4 | 0.2° | 0.0° |
| N1 | C2 | N3 | HN3 | 179.8° | 180.0° |
| C2 | N1 | C6 | C5 | 0.2° | 0.6° |
| C2 | N1 | C6 | C7 | 164.1° | 179.7° |
| C6 | N1 | C2 | N3 | 0.3° | 0.2° |
| C6 | N1 | C2 | O2 | 179.9° | 179.7° |
| N1 | C6 | C5 | C4 | 0.0° | 0.6° |
| N1 | C6 | C5 | C7 | 165.8° | 179.7° |
| N1 | C6 | C5 | H5 | 180.0° | 179.7° |
| N1 | C6 | C7 | O71 | 155.2° | 85.7° |
| N1 | C6 | C7 | O72 | 25.5° | 94.3° |
| C2 | N3 | C4 | HN3 | 180.0° | 180.0° |
| C2 | N3 | C4 | C5 | 0.1° | 0.0° |
| C2 | N3 | C4 | O4 | 180.0° | 180.0° |
| O2 | C2 | N3 | C4 | 180.0° | 180.0° |
| O2 | C2 | N3 | HN3 | 0.0° | 0.0° |
| N3 | C4 | C5 | O4 | 179.9° | 179.9° |
| N3 | C4 | C5 | C6 | 0.2° | 0.4° |
| N3 | C4 | C5 | H5 | 179.8° | 180.0° |
| HN3 | N3 | C4 | C5 | 179.9° | 180.0° |
| HN3 | N3 | C4 | O4 | 0.0° | 0.1° |
| C4 | C5 | C6 | H5 | 180.0° | 179.6° |
| C4 | C5 | C6 | C7 | 165.9° | 179.7° |
| O4 | C4 | C5 | C6 | 179.9° | 179.7° |
| O4 | C4 | C5 | H5 | 0.0° | 0.1° |
| C5 | C6 | C7 | O71 | 39.4° | 94.7° |
| C5 | C6 | C7 | O72 | 139.9° | 85.3° |
| H5 | C5 | C6 | C7 | 14.2° | 0.0° |
| C6 | C7 | O71 | O72 | 179.3° | 180.0° |
| C6 | C7 | O72 | HO7 | 179.3° | 180.0° |
| O71 | C7 | O72 | HO7 | 0.0° | 0.0° |
