OMG
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| P | OP1 | doub | 1.48Å | 1.49Å | |
| P | OP2 | sing | 1.61Å | 1.48Å | |
| P | OP3 | sing | 1.61Å | 1.61Å | |
| P | O5' | sing | 1.61Å | 1.60Å | |
| OP2 | HOP2 | sing | 0.97Å | 0.95Å | |
| OP3 | HOP3 | sing | 0.97Å | 0.95Å | |
| O5' | C5' | sing | 1.43Å | 1.42Å | |
| C5' | C4' | sing | 1.53Å | 1.51Å | |
| C5' | H5' | sing | 1.09Å | 1.12Å | |
| C5' | H5'' | sing | 1.09Å | 1.11Å | |
| C4' | O4' | sing | 1.44Å | 1.44Å | |
| C4' | C3' | sing | 1.54Å | 1.52Å | |
| C4' | H4' | sing | 1.09Å | 1.11Å | |
| O4' | C1' | sing | 1.44Å | 1.41Å | |
| C3' | O3' | sing | 1.43Å | 1.43Å | |
| C3' | C2' | sing | 1.55Å | 1.53Å | |
| C3' | H3' | sing | 1.09Å | 1.12Å | |
| O3' | HO3' | sing | 0.97Å | 0.95Å | |
| C2' | O2' | sing | 1.43Å | 1.45Å | |
| C2' | C1' | sing | 1.55Å | 1.53Å | |
| C2' | H2' | sing | 1.09Å | 1.12Å | |
| O2' | CM2 | sing | 1.43Å | 1.45Å | |
| CM2 | HM21 | sing | 1.09Å | 1.12Å | |
| CM2 | HM22 | sing | 1.09Å | 1.11Å | |
| CM2 | HM23 | sing | 1.09Å | 1.12Å | |
| C1' | N9 | sing | 1.47Å | 1.46Å | |
| C1' | H1' | sing | 1.09Å | 1.12Å | |
| N9 | C8 | sing | 1.36Å | 1.38Å | Aromatic |
| N9 | C4 | sing | 1.37Å | 1.38Å | Aromatic |
| C8 | N7 | doub | 1.30Å | 1.31Å | Aromatic |
| C8 | H8 | sing | 1.08Å | 1.10Å | |
| N7 | C5 | sing | 1.35Å | 1.39Å | Aromatic |
| C5 | C6 | sing | 1.41Å | 1.43Å | |
| C5 | C4 | doub | 1.40Å | 1.39Å | Aromatic |
| C6 | O6 | doub | 1.22Å | 1.25Å | |
| C6 | N1 | sing | 1.35Å | 1.40Å | |
| N1 | C2 | sing | 1.36Å | 1.39Å | |
| N1 | HN1 | sing | 0.97Å | 1.02Å | |
| C2 | N2 | sing | 1.37Å | 1.35Å | |
| C2 | N3 | doub | 1.31Å | 1.33Å | |
| N2 | HN21 | sing | 0.97Å | 1.02Å | |
| N2 | HN22 | sing | 0.97Å | 1.02Å | |
| N3 | C4 | sing | 1.34Å | 1.36Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| OP1 | P | OP2 | 119.4° | 109.5° |
| OP1 | P | OP3 | 106.3° | 109.5° |
| OP1 | P | O5' | 109.4° | 109.5° |
| OP2 | P | OP3 | 109.1° | 109.4° |
| OP2 | P | O5' | 108.3° | 109.5° |
| P | OP2 | HOP2 | 119.4° | 106.8° |
| OP3 | P | O5' | 103.3° | 109.5° |
| P | OP3 | HOP3 | 106.3° | 106.9° |
| P | O5' | C5' | 121.4° | 106.8° |
| O5' | C5' | C4' | 109.9° | 109.5° |
| O5' | C5' | H5' | 112.0° | 109.5° |
| O5' | C5' | H5'' | 112.1° | 109.4° |
| C4' | C5' | H5' | 112.0° | 109.5° |
| C4' | C5' | H5'' | 112.0° | 109.4° |
| C5' | C4' | O4' | 107.3° | 110.0° |
| C5' | C4' | C3' | 115.1° | 109.9° |
| C5' | C4' | H4' | 105.6° | 109.9° |
| H5' | C5' | H5'' | 98.4° | 109.5° |
| O4' | C4' | C3' | 103.9° | 107.3° |
| O4' | C4' | H4' | 116.5° | 109.9° |
| C4' | O4' | C1' | 109.5° | 107.0° |
| C3' | C4' | H4' | 108.9° | 109.8° |
| C4' | C3' | O3' | 112.0° | 110.7° |
| C4' | C3' | C2' | 103.0° | 104.2° |
| C4' | C3' | H3' | 113.1° | 110.5° |
| O4' | C1' | C2' | 108.4° | 103.5° |
| O4' | C1' | N9 | 108.1° | 110.6° |
| O4' | C1' | H1' | 113.1° | 110.6° |
| O3' | C3' | C2' | 112.1° | 110.5° |
| O3' | C3' | H3' | 104.1° | 110.4° |
| C3' | O3' | HO3' | 112.0° | 106.8° |
| C2' | C3' | H3' | 112.9° | 110.5° |
| C3' | C2' | O2' | 115.4° | 110.9° |
| C3' | C2' | C1' | 102.6° | 102.1° |
| C3' | C2' | H2' | 110.4° | 110.9° |
| O2' | C2' | C1' | 109.9° | 110.9° |
| O2' | C2' | H2' | 103.1° | 110.8° |
| C2' | O2' | CM2 | 119.4° | 106.8° |
| C1' | C2' | H2' | 115.8° | 110.9° |
| C2' | C1' | N9 | 114.8° | 110.8° |
| C2' | C1' | H1' | 106.1° | 110.6° |
| O2' | CM2 | HM21 | 119.4° | 109.5° |
| O2' | CM2 | HM22 | 108.7° | 109.5° |
| O2' | CM2 | HM23 | 108.6° | 109.5° |
| HM21 | CM2 | HM22 | 108.7° | 109.4° |
| HM21 | CM2 | HM23 | 108.5° | 109.5° |
| HM22 | CM2 | HM23 | 101.4° | 109.5° |
| N9 | C1' | H1' | 106.4° | 110.5° |
| C1' | N9 | C8 | 127.0° | 126.2° |
| C1' | N9 | C4 | 126.6° | 126.2° |
| C8 | N9 | C4 | 106.4° | 107.5° |
| N9 | C8 | N7 | 113.4° | 109.8° |
| N9 | C8 | H8 | 125.6° | 125.1° |
| N9 | C4 | C5 | 105.2° | 106.0° |
| N9 | C4 | N3 | 125.9° | 134.3° |
| N7 | C8 | H8 | 121.0° | 125.1° |
| C8 | N7 | C5 | 104.2° | 109.3° |
| N7 | C5 | C6 | 130.3° | 134.1° |
| N7 | C5 | C4 | 110.8° | 107.3° |
| C6 | C5 | C4 | 118.9° | 118.6° |
| C5 | C6 | O6 | 128.7° | 120.9° |
| C5 | C6 | N1 | 111.3° | 118.4° |
| C5 | C4 | N3 | 128.9° | 119.7° |
| O6 | C6 | N1 | 120.0° | 120.8° |
| C6 | N1 | C2 | 125.3° | 120.3° |
| C6 | N1 | HN1 | 117.9° | 119.9° |
| C2 | N1 | HN1 | 116.8° | 119.8° |
| N1 | C2 | N2 | 116.3° | 119.0° |
| N1 | C2 | N3 | 123.8° | 121.9° |
| N2 | C2 | N3 | 119.8° | 119.0° |
| C2 | N2 | HN21 | 116.4° | 120.0° |
| C2 | N2 | HN22 | 109.8° | 120.0° |
| C2 | N3 | C4 | 111.9° | 121.2° |
| HN21 | N2 | HN22 | 109.6° | 120.0° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| OP1 | P | OP2 | OP3 | 122.4° | 120.0° |
| OP1 | P | OP2 | O5' | 125.9° | 120.0° |
| OP1 | P | OP3 | O5' | 115.1° | 120.1° |
| OP1 | P | OP2 | HOP2 | 180.0° | 60.0° |
| OP1 | P | OP3 | HOP3 | 180.0° | 180.0° |
| OP1 | P | O5' | C5' | 80.3° | 60.0° |
| OP2 | P | OP3 | O5' | 115.0° | 119.9° |
| OP2 | P | OP3 | HOP3 | 50.1° | 60.1° |
| OP2 | P | O5' | C5' | 51.3° | 180.0° |
| OP3 | P | OP2 | HOP2 | 57.6° | 60.0° |
| OP3 | P | O5' | C5' | 166.8° | 60.1° |
| O5' | P | OP2 | HOP2 | 54.1° | 180.0° |
| O5' | P | OP3 | HOP3 | 64.9° | 59.9° |
| P | O5' | C5' | C4' | 108.2° | 179.9° |
| P | O5' | C5' | H5' | 126.5° | 60.0° |
| P | O5' | C5' | H5'' | 17.0° | 60.0° |
| O5' | C5' | C4' | H5' | 125.2° | 120.0° |
| O5' | C5' | C4' | H5'' | 125.3° | 119.9° |
| O5' | C5' | H5' | H5'' | 118.0° | 120.0° |
| O5' | C5' | C4' | O4' | 67.5° | 62.1° |
| O5' | C5' | C4' | C3' | 47.6° | 180.0° |
| O5' | C5' | C4' | H4' | 167.7° | 59.0° |
| C4' | C5' | H5' | H5'' | 118.0° | 120.0° |
| C5' | C4' | O4' | C3' | 122.3° | 119.5° |
| C5' | C4' | O4' | H4' | 118.0° | 121.1° |
| C5' | C4' | C3' | H4' | 118.2° | 121.0° |
| C5' | C4' | O4' | C1' | 150.8° | 146.0° |
| C5' | C4' | C3' | O3' | 86.7° | 119.6° |
| C5' | C4' | C3' | C2' | 152.7° | 121.6° |
| C5' | C4' | C3' | H3' | 30.5° | 3.0° |
| H5' | C5' | C4' | O4' | 167.3° | 177.9° |
| H5' | C5' | C4' | C3' | 77.6° | 60.0° |
| H5' | C5' | C4' | H4' | 42.4° | 61.0° |
| H5'' | C5' | C4' | O4' | 57.8° | 57.9° |
| H5'' | C5' | C4' | C3' | 172.9° | 60.1° |
| H5'' | C5' | C4' | H4' | 67.1° | 179.0° |
| O4' | C4' | C3' | H4' | 124.7° | 119.4° |
| O4' | C4' | C3' | O3' | 156.3° | 120.8° |
| O4' | C4' | C3' | C2' | 35.6° | 2.0° |
| O4' | C4' | C3' | H3' | 86.6° | 116.6° |
| C4' | O4' | C1' | C2' | 9.5° | 40.0° |
| C4' | O4' | C1' | N9 | 134.5° | 158.7° |
| C4' | O4' | C1' | H1' | 107.9° | 78.5° |
| C3' | C4' | O4' | C1' | 28.5° | 26.5° |
| C4' | C3' | O3' | C2' | 115.2° | 114.9° |
| C4' | C3' | O3' | H3' | 122.5° | 122.6° |
| C4' | C3' | C2' | H3' | 122.3° | 118.6° |
| C4' | C3' | O3' | HO3' | 180.0° | 65.1° |
| C4' | C3' | C2' | O2' | 90.1° | 139.1° |
| C4' | C3' | C2' | C1' | 29.4° | 20.9° |
| C4' | C3' | C2' | H2' | 153.4° | 97.3° |
| H4' | C4' | O4' | C1' | 91.2° | 92.9° |
| H4' | C4' | C3' | O3' | 31.5° | 1.4° |
| H4' | C4' | C3' | C2' | 89.1° | 117.4° |
| H4' | C4' | C3' | H3' | 148.7° | 124.0° |
| O4' | C1' | C2' | C3' | 13.3° | 37.0° |
| O4' | C1' | C2' | O2' | 110.0° | 155.2° |
| O4' | C1' | C2' | N9 | 121.0° | 118.6° |
| O4' | C1' | C2' | H1' | 121.8° | 118.5° |
| O4' | C1' | C2' | H2' | 133.6° | 81.2° |
| O4' | C1' | N9 | H1' | 121.8° | 122.9° |
| O4' | C1' | N9 | C8 | 6.8° | 28.4° |
| O4' | C1' | N9 | C4 | 174.9° | 151.7° |
| O3' | C3' | C2' | H3' | 117.2° | 122.5° |
| O3' | C3' | C2' | O2' | 30.4° | 20.2° |
| O3' | C3' | C2' | C1' | 149.9° | 98.0° |
| O3' | C3' | C2' | H2' | 86.0° | 143.8° |
| C2' | C3' | O3' | HO3' | 64.9° | 180.0° |
| C3' | C2' | O2' | C1' | 115.4° | 112.7° |
| C3' | C2' | O2' | H2' | 120.5° | 123.7° |
| C3' | C2' | C1' | H2' | 120.3° | 118.2° |
| C3' | C2' | O2' | CM2 | 167.5° | 94.3° |
| C3' | C2' | C1' | N9 | 107.7° | 155.6° |
| C3' | C2' | C1' | H1' | 135.0° | 81.5° |
| H3' | C3' | O3' | HO3' | 57.5° | 57.5° |
| H3' | C3' | C2' | O2' | 147.6° | 102.3° |
| H3' | C3' | C2' | C1' | 92.9° | 139.5° |
| H3' | C3' | C2' | H2' | 31.2° | 21.3° |
| O2' | C2' | C1' | H2' | 116.4° | 123.6° |
| C2' | O2' | CM2 | HM21 | 179.9° | 180.0° |
| C2' | O2' | CM2 | HM22 | 54.7° | 60.1° |
| C2' | O2' | CM2 | HM23 | 54.8° | 60.0° |
| O2' | C2' | C1' | N9 | 129.0° | 86.2° |
| O2' | C2' | C1' | H1' | 11.8° | 36.7° |
| C1' | C2' | O2' | CM2 | 77.1° | 152.9° |
| C2' | C1' | N9 | H1' | 117.1° | 122.9° |
| C2' | C1' | N9 | C8 | 128.0° | 85.7° |
| C2' | C1' | N9 | C4 | 53.7° | 94.1° |
| H2' | C2' | O2' | CM2 | 47.0° | 29.3° |
| H2' | C2' | C1' | N9 | 12.6° | 37.4° |
| H2' | C2' | C1' | H1' | 104.6° | 160.3° |
| O2' | CM2 | HM21 | HM22 | 125.4° | 120.0° |
| O2' | CM2 | HM21 | HM23 | 125.2° | 120.1° |
| O2' | CM2 | HM22 | HM23 | 114.3° | 120.0° |
| HM21 | CM2 | HM22 | HM23 | 114.2° | 120.0° |
| C1' | N9 | C8 | C4 | 178.6° | 179.9° |
| C1' | N9 | C8 | N7 | 177.4° | 180.0° |
| C1' | N9 | C8 | H8 | 2.6° | 0.2° |
| C1' | N9 | C4 | C5 | 177.3° | 179.8° |
| C1' | N9 | C4 | N3 | 1.4° | 0.6° |
| H1' | C1' | N9 | C8 | 114.9° | 151.3° |
| H1' | C1' | N9 | C4 | 63.3° | 28.8° |
| N9 | C8 | N7 | H8 | 180.0° | 179.8° |
| N9 | C8 | N7 | C5 | 0.5° | 0.1° |
| C8 | N9 | C4 | C5 | 1.2° | 0.3° |
| C8 | N9 | C4 | N3 | 179.9° | 179.5° |
| C4 | N9 | C8 | N7 | 1.1° | 0.1° |
| C4 | N9 | C8 | H8 | 178.8° | 179.7° |
| N9 | C4 | C5 | N7 | 1.0° | 0.4° |
| N9 | C4 | C5 | C6 | 178.3° | 179.9° |
| N9 | C4 | C5 | N3 | 178.6° | 179.3° |
| N9 | C4 | N3 | C2 | 178.3° | 179.6° |
| C8 | N7 | C5 | C6 | 178.9° | 180.0° |
| C8 | N7 | C5 | C4 | 0.3° | 0.3° |
| H8 | C8 | N7 | C5 | 179.5° | 179.9° |
| N7 | C5 | C6 | C4 | 179.2° | 179.7° |
| N7 | C5 | C6 | O6 | 0.6° | 0.1° |
| N7 | C5 | C6 | N1 | 179.4° | 179.9° |
| N7 | C5 | C4 | N3 | 179.6° | 179.7° |
| C5 | C6 | O6 | N1 | 180.0° | 180.0° |
| C5 | C6 | N1 | C2 | 0.1° | 0.0° |
| C5 | C6 | N1 | HN1 | 180.0° | 179.9° |
| C6 | C5 | C4 | N3 | 0.3° | 0.6° |
| C4 | C5 | C6 | O6 | 179.8° | 179.7° |
| C4 | C5 | C6 | N1 | 0.2° | 0.3° |
| C5 | C4 | N3 | C2 | 0.0° | 0.6° |
| O6 | C6 | N1 | C2 | 179.9° | 180.0° |
| O6 | C6 | N1 | HN1 | 0.0° | 0.1° |
| C6 | N1 | C2 | HN1 | 179.9° | 179.9° |
| C6 | N1 | C2 | N2 | 179.5° | 179.9° |
| C6 | N1 | C2 | N3 | 0.4° | 0.0° |
| N1 | C2 | N2 | N3 | 179.9° | 180.0° |
| N1 | C2 | N2 | HN21 | 179.9° | 180.0° |
| N1 | C2 | N2 | HN22 | 54.7° | 0.0° |
| N1 | C2 | N3 | C4 | 0.3° | 0.2° |
| HN1 | N1 | C2 | N2 | 0.4° | 0.0° |
| HN1 | N1 | C2 | N3 | 179.7° | 180.0° |
| C2 | N2 | HN21 | HN22 | 125.3° | 180.0° |
| N2 | C2 | N3 | C4 | 179.6° | 179.8° |
| N3 | C2 | N2 | HN21 | 0.0° | 0.0° |
| N3 | C2 | N2 | HN22 | 125.2° | 180.0° |
