OMD
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| C1 | C2 | sing | 1.51Å | 1.54Å | |
| C1 | O1 | doub | 1.21Å | 1.23Å | |
| C1 | O2 | sing | 1.34Å | 1.23Å | |
| C2 | C1' | sing | 1.51Å | 1.51Å | |
| C2 | H21 | sing | 1.09Å | 1.12Å | |
| C2 | H22 | sing | 1.09Å | 1.12Å | |
| C1' | C2' | doub | 1.38Å | 1.39Å | Aromatic |
| C1' | C6' | sing | 1.39Å | 1.39Å | Aromatic |
| C2' | C3' | sing | 1.39Å | 1.37Å | Aromatic |
| C2' | H2' | sing | 1.08Å | 1.10Å | |
| C3' | O3' | sing | 1.36Å | 1.38Å | |
| C3' | C4' | doub | 1.39Å | 1.39Å | Aromatic |
| O3' | HO3 | sing | 0.97Å | 0.95Å | |
| C4' | C5' | sing | 1.38Å | 1.37Å | Aromatic |
| C4' | H4' | sing | 1.08Å | 1.10Å | |
| C5' | C6' | doub | 1.39Å | 1.38Å | Aromatic |
| C5' | H5' | sing | 1.08Å | 1.10Å | |
| C6' | O6' | sing | 1.36Å | 1.09Å | |
| O6' | HO6 | sing | 0.97Å | 0.95Å | |
| O2 | HO2 | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| C2 | C1 | O1 | 120.1° | 120.0° |
| C2 | C1 | O2 | 121.9° | 120.1° |
| C1 | C2 | C1' | 114.6° | 109.5° |
| C1 | C2 | H21 | 110.4° | 109.5° |
| C1 | C2 | H22 | 110.4° | 109.4° |
| O1 | C1 | O2 | 118.0° | 120.0° |
| C1 | O2 | HO2 | 122.0° | 120.1° |
| C1' | C2 | H21 | 110.3° | 109.4° |
| C1' | C2 | H22 | 110.3° | 109.5° |
| C2 | C1' | C2' | 120.0° | 120.0° |
| C2 | C1' | C6' | 122.5° | 119.9° |
| H21 | C2 | H22 | 99.9° | 109.5° |
| C2' | C1' | C6' | 117.5° | 120.0° |
| C1' | C2' | C3' | 118.9° | 120.0° |
| C1' | C2' | H2' | 121.2° | 120.0° |
| C1' | C6' | C5' | 122.9° | 119.9° |
| C1' | C6' | O6' | 123.2° | 120.1° |
| C3' | C2' | H2' | 120.0° | 120.0° |
| C2' | C3' | O3' | 125.6° | 120.0° |
| C2' | C3' | C4' | 123.5° | 120.0° |
| O3' | C3' | C4' | 110.9° | 120.0° |
| C3' | O3' | HO3 | 125.5° | 106.8° |
| C3' | C4' | C5' | 117.3° | 120.0° |
| C3' | C4' | H4' | 122.1° | 120.0° |
| C5' | C4' | H4' | 120.6° | 120.0° |
| C4' | C5' | C6' | 119.9° | 120.0° |
| C4' | C5' | H5' | 119.7° | 120.0° |
| C6' | C5' | H5' | 120.4° | 120.0° |
| C5' | C6' | O6' | 113.9° | 120.0° |
| C6' | O6' | HO6 | 123.1° | 106.8° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| C2 | C1 | O1 | O2 | 177.6° | 180.0° |
| C1 | C2 | C1' | H21 | 125.3° | 120.0° |
| C1 | C2 | C1' | H22 | 125.3° | 120.0° |
| C1 | C2 | H21 | H22 | 116.2° | 119.9° |
| C1 | C2 | C1' | C2' | 33.9° | 90.0° |
| C1 | C2 | C1' | C6' | 146.3° | 90.3° |
| C2 | C1 | O2 | HO2 | 180.0° | 180.0° |
| O1 | C1 | C2 | C1' | 178.8° | 0.0° |
| O1 | C1 | C2 | H21 | 53.6° | 120.0° |
| O1 | C1 | C2 | H22 | 55.9° | 120.1° |
| O1 | C1 | O2 | HO2 | 2.5° | 0.0° |
| O2 | C1 | C2 | C1' | 3.7° | 180.0° |
| O2 | C1 | C2 | H21 | 129.0° | 60.0° |
| O2 | C1 | C2 | H22 | 121.5° | 60.0° |
| C1' | C2 | H21 | H22 | 116.1° | 120.0° |
| C2 | C1' | C2' | C6' | 179.8° | 179.7° |
| C2 | C1' | C2' | C3' | 179.5° | 180.0° |
| C2 | C1' | C2' | H2' | 0.5° | 0.0° |
| C2 | C1' | C6' | C5' | 178.4° | 179.8° |
| C2 | C1' | C6' | O6' | 0.5° | 0.3° |
| H21 | C2 | C1' | C2' | 91.4° | 30.0° |
| H21 | C2 | C1' | C6' | 88.4° | 149.7° |
| H22 | C2 | C1' | C2' | 159.2° | 150.0° |
| H22 | C2 | C1' | C6' | 21.0° | 29.7° |
| C1' | C2' | C3' | H2' | 179.9° | 180.0° |
| C1' | C2' | C3' | O3' | 179.9° | 179.9° |
| C1' | C2' | C3' | C4' | 0.1° | 0.0° |
| C2' | C1' | C6' | C5' | 1.8° | 0.5° |
| C2' | C1' | C6' | O6' | 179.3° | 180.0° |
| C6' | C1' | C2' | C3' | 0.6° | 0.2° |
| C6' | C1' | C2' | H2' | 179.3° | 179.8° |
| C1' | C6' | C5' | C4' | 2.1° | 0.6° |
| C1' | C6' | C5' | O6' | 179.0° | 179.5° |
| C1' | C6' | C5' | H5' | 177.9° | 179.7° |
| C1' | C6' | O6' | HO6 | 180.0° | 90.5° |
| C2' | C3' | O3' | C4' | 180.0° | 179.9° |
| C2' | C3' | O3' | HO3 | 180.0° | 90.0° |
| C2' | C3' | C4' | C5' | 0.2° | 0.1° |
| C2' | C3' | C4' | H4' | 179.8° | 180.0° |
| H2' | C2' | C3' | O3' | 0.0° | 0.1° |
| H2' | C2' | C3' | C4' | 180.0° | 180.0° |
| O3' | C3' | C4' | C5' | 179.8° | 180.0° |
| O3' | C3' | C4' | H4' | 0.3° | 0.1° |
| C4' | C3' | O3' | HO3 | 0.1° | 89.9° |
| C3' | C4' | C5' | H4' | 180.0° | 179.9° |
| C3' | C4' | C5' | C6' | 1.3° | 0.3° |
| C3' | C4' | C5' | H5' | 178.7° | 179.9° |
| C4' | C5' | C6' | H5' | 180.0° | 179.7° |
| C4' | C5' | C6' | O6' | 178.9° | 180.0° |
| H4' | C4' | C5' | C6' | 178.7° | 179.7° |
| H4' | C4' | C5' | H5' | 1.3° | 0.0° |
| C5' | C6' | O6' | HO6 | 1.0° | 90.0° |
| H5' | C5' | C6' | O6' | 1.1° | 0.2° |
