OMC
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| N1 | C2 | sing | 1.34Å | 1.38Å | |
| N1 | C6 | sing | 1.36Å | 1.37Å | |
| N1 | C1' | sing | 1.47Å | 1.46Å | |
| C2 | N3 | sing | 1.33Å | 1.35Å | |
| C2 | O2 | doub | 1.22Å | 1.24Å | |
| N3 | C4 | doub | 1.33Å | 1.34Å | |
| C4 | C5 | sing | 1.41Å | 1.42Å | |
| C4 | N4 | sing | 1.38Å | 1.34Å | |
| C5 | C6 | doub | 1.35Å | 1.34Å | |
| C5 | H5 | sing | 1.08Å | 1.10Å | |
| C6 | H6 | sing | 1.08Å | 1.10Å | |
| N4 | HN41 | sing | 0.97Å | 1.02Å | |
| N4 | HN42 | sing | 0.97Å | 1.02Å | |
| C1' | C2' | sing | 1.55Å | 1.52Å | |
| C1' | O4' | sing | 1.44Å | 1.41Å | |
| C1' | H1' | sing | 1.09Å | 1.11Å | |
| C2' | O2' | sing | 1.43Å | 1.44Å | |
| C2' | C3' | sing | 1.55Å | 1.52Å | |
| C2' | H2' | sing | 1.09Å | 1.12Å | |
| O2' | CM2 | sing | 1.43Å | 1.45Å | |
| CM2 | HM21 | sing | 1.09Å | 1.11Å | |
| CM2 | HM22 | sing | 1.09Å | 1.12Å | |
| CM2 | HM23 | sing | 1.09Å | 1.11Å | |
| C3' | C4' | sing | 1.54Å | 1.52Å | |
| C3' | O3' | sing | 1.43Å | 1.42Å | |
| C3' | H3' | sing | 1.09Å | 1.12Å | |
| C4' | O4' | sing | 1.44Å | 1.45Å | |
| C4' | C5' | sing | 1.53Å | 1.50Å | |
| C4' | H4' | sing | 1.09Å | 1.11Å | |
| O3' | HO3' | sing | 0.97Å | 0.95Å | |
| C5' | O5' | sing | 1.43Å | 1.42Å | |
| C5' | H5' | sing | 1.09Å | 1.12Å | |
| C5' | H5'' | sing | 1.09Å | 1.11Å | |
| O5' | P | sing | 1.61Å | 1.59Å | |
| P | OP1 | doub | 1.48Å | 1.49Å | |
| P | OP2 | sing | 1.61Å | 1.49Å | |
| P | OP3 | sing | 1.61Å | 1.61Å | |
| OP2 | HOP2 | sing | 0.97Å | 0.95Å | |
| OP3 | HOP3 | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| C2 | N1 | C6 | 120.7° | 120.4° |
| C2 | N1 | C1' | 118.3° | 119.8° |
| N1 | C2 | N3 | 119.4° | 121.1° |
| N1 | C2 | O2 | 118.4° | 119.5° |
| C6 | N1 | C1' | 121.0° | 119.8° |
| N1 | C6 | C5 | 121.0° | 119.3° |
| N1 | C6 | H6 | 120.6° | 120.4° |
| N1 | C1' | C2' | 111.1° | 110.8° |
| N1 | C1' | O4' | 108.5° | 110.6° |
| N1 | C1' | H1' | 108.2° | 110.5° |
| N3 | C2 | O2 | 122.2° | 119.4° |
| C2 | N3 | C4 | 119.8° | 120.7° |
| N3 | C4 | C5 | 121.8° | 119.6° |
| N3 | C4 | N4 | 118.4° | 120.2° |
| C5 | C4 | N4 | 119.9° | 120.2° |
| C4 | C5 | C6 | 117.3° | 119.0° |
| C4 | C5 | H5 | 124.3° | 120.5° |
| C4 | N4 | HN41 | 118.4° | 120.0° |
| C4 | N4 | HN42 | 109.0° | 120.1° |
| C6 | C5 | H5 | 118.4° | 120.5° |
| C5 | C6 | H6 | 118.4° | 120.3° |
| HN41 | N4 | HN42 | 108.9° | 120.0° |
| C2' | C1' | O4' | 107.0° | 103.5° |
| C2' | C1' | H1' | 109.7° | 110.6° |
| C1' | C2' | O2' | 108.5° | 110.9° |
| C1' | C2' | C3' | 101.0° | 102.1° |
| C1' | C2' | H2' | 116.7° | 110.9° |
| O4' | C1' | H1' | 112.3° | 110.6° |
| C1' | O4' | C4' | 109.7° | 107.0° |
| O2' | C2' | C3' | 113.4° | 110.9° |
| O2' | C2' | H2' | 105.2° | 110.8° |
| C2' | O2' | CM2 | 119.4° | 106.8° |
| C3' | C2' | H2' | 112.2° | 111.0° |
| C2' | C3' | C4' | 101.8° | 104.2° |
| C2' | C3' | O3' | 111.9° | 110.5° |
| C2' | C3' | H3' | 113.4° | 110.5° |
| O2' | CM2 | HM21 | 119.4° | 109.5° |
| O2' | CM2 | HM22 | 108.6° | 109.5° |
| O2' | CM2 | HM23 | 108.7° | 109.5° |
| HM21 | CM2 | HM22 | 108.6° | 109.5° |
| HM21 | CM2 | HM23 | 108.7° | 109.4° |
| HM22 | CM2 | HM23 | 101.3° | 109.4° |
| C4' | C3' | O3' | 110.9° | 110.7° |
| C4' | C3' | H3' | 114.4° | 110.5° |
| C3' | C4' | O4' | 104.1° | 107.3° |
| C3' | C4' | C5' | 114.5° | 109.9° |
| C3' | C4' | H4' | 109.6° | 109.8° |
| O3' | C3' | H3' | 104.7° | 110.4° |
| C3' | O3' | HO3' | 111.9° | 106.8° |
| O4' | C4' | C5' | 108.8° | 110.0° |
| O4' | C4' | H4' | 115.2° | 109.9° |
| C5' | C4' | H4' | 105.0° | 109.9° |
| C4' | C5' | O5' | 110.0° | 109.5° |
| C4' | C5' | H5' | 112.0° | 109.4° |
| C4' | C5' | H5'' | 112.0° | 109.4° |
| O5' | C5' | H5' | 112.0° | 109.5° |
| O5' | C5' | H5'' | 112.0° | 109.5° |
| C5' | O5' | P | 120.3° | 106.9° |
| H5' | C5' | H5'' | 98.4° | 109.4° |
| O5' | P | OP1 | 109.0° | 109.4° |
| O5' | P | OP2 | 108.1° | 109.5° |
| O5' | P | OP3 | 104.1° | 109.5° |
| OP1 | P | OP2 | 120.0° | 109.4° |
| OP1 | P | OP3 | 107.7° | 109.5° |
| OP2 | P | OP3 | 106.7° | 109.5° |
| P | OP2 | HOP2 | 108.1° | 106.8° |
| P | OP3 | HOP3 | 104.2° | 106.8° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| C2 | N1 | C6 | C1' | 178.9° | 179.7° |
| N1 | C2 | N3 | O2 | 180.0° | 179.4° |
| N1 | C2 | N3 | C4 | 0.6° | 0.6° |
| C2 | N1 | C6 | C5 | 1.3° | 0.3° |
| C2 | N1 | C6 | H6 | 178.7° | 179.7° |
| C2 | N1 | C1' | C2' | 97.8° | 55.9° |
| C2 | N1 | C1' | O4' | 144.8° | 58.2° |
| C2 | N1 | C1' | H1' | 22.7° | 178.9° |
| C6 | N1 | C2 | N3 | 1.5° | 0.6° |
| C6 | N1 | C2 | O2 | 178.5° | 180.0° |
| N1 | C6 | C5 | C4 | 0.2° | 0.1° |
| N1 | C6 | C5 | H6 | 180.0° | 180.0° |
| N1 | C6 | C5 | H5 | 179.9° | 180.0° |
| C6 | N1 | C1' | C2' | 81.2° | 124.4° |
| C6 | N1 | C1' | O4' | 36.2° | 121.4° |
| C6 | N1 | C1' | H1' | 158.3° | 1.5° |
| C1' | N1 | C2 | N3 | 177.4° | 179.7° |
| C1' | N1 | C2 | O2 | 2.5° | 0.3° |
| C1' | N1 | C6 | C5 | 177.6° | 180.0° |
| C1' | N1 | C6 | H6 | 2.4° | 0.0° |
| N1 | C1' | C2' | O4' | 118.2° | 118.6° |
| N1 | C1' | C2' | H1' | 119.7° | 122.9° |
| N1 | C1' | O4' | H1' | 119.6° | 122.8° |
| N1 | C1' | C2' | O2' | 150.9° | 86.2° |
| N1 | C1' | C2' | C3' | 89.6° | 155.6° |
| N1 | C1' | C2' | H2' | 32.3° | 37.3° |
| N1 | C1' | O4' | C4' | 113.9° | 158.7° |
| C2 | N3 | C4 | C5 | 0.5° | 0.4° |
| C2 | N3 | C4 | N4 | 179.3° | 179.7° |
| O2 | C2 | N3 | C4 | 179.5° | 180.0° |
| N3 | C4 | C5 | N4 | 179.8° | 179.9° |
| N3 | C4 | C5 | C6 | 0.8° | 0.1° |
| N3 | C4 | C5 | H5 | 179.2° | 180.0° |
| N3 | C4 | N4 | HN41 | 180.0° | 0.0° |
| N3 | C4 | N4 | HN42 | 54.8° | 179.9° |
| C4 | C5 | C6 | H5 | 180.0° | 180.0° |
| C4 | C5 | C6 | H6 | 179.8° | 180.0° |
| C5 | C4 | N4 | HN41 | 0.2° | 179.9° |
| C5 | C4 | N4 | HN42 | 125.4° | 0.1° |
| N4 | C4 | C5 | C6 | 179.1° | 180.0° |
| N4 | C4 | C5 | H5 | 1.0° | 0.0° |
| C4 | N4 | HN41 | HN42 | 125.2° | 179.9° |
| H5 | C5 | C6 | H6 | 0.1° | 0.0° |
| C2' | C1' | O4' | H1' | 120.5° | 118.5° |
| C1' | C2' | O2' | C3' | 111.4° | 112.7° |
| C1' | C2' | O2' | H2' | 125.6° | 123.6° |
| C1' | C2' | C3' | H2' | 125.1° | 118.2° |
| C1' | C2' | O2' | CM2 | 78.1° | 152.9° |
| C1' | C2' | C3' | C4' | 39.0° | 20.9° |
| C1' | C2' | C3' | O3' | 157.4° | 98.0° |
| C1' | C2' | C3' | H3' | 84.4° | 139.6° |
| C2' | C1' | O4' | C4' | 6.1° | 40.0° |
| O4' | C1' | C2' | O2' | 90.8° | 155.2° |
| O4' | C1' | C2' | C3' | 28.6° | 37.0° |
| O4' | C1' | C2' | H2' | 150.6° | 81.2° |
| C1' | O4' | C4' | C3' | 19.3° | 26.5° |
| C1' | O4' | C4' | C5' | 141.8° | 146.0° |
| C1' | O4' | C4' | H4' | 100.7° | 92.9° |
| H1' | C1' | C2' | O2' | 31.3° | 36.7° |
| H1' | C1' | C2' | C3' | 150.7° | 81.5° |
| H1' | C1' | C2' | H2' | 87.3° | 160.3° |
| H1' | C1' | O4' | C4' | 126.5° | 78.5° |
| O2' | C2' | C3' | H2' | 119.0° | 123.6° |
| C2' | O2' | CM2 | HM21 | 180.0° | 180.0° |
| C2' | O2' | CM2 | HM22 | 54.7° | 60.0° |
| C2' | O2' | CM2 | HM23 | 54.7° | 60.1° |
| O2' | C2' | C3' | C4' | 76.9° | 139.1° |
| O2' | C2' | C3' | O3' | 41.6° | 20.2° |
| O2' | C2' | C3' | H3' | 159.8° | 102.2° |
| C3' | C2' | O2' | CM2 | 170.6° | 94.4° |
| C2' | C3' | C4' | O3' | 119.2° | 118.8° |
| C2' | C3' | C4' | H3' | 122.6° | 118.7° |
| C2' | C3' | O3' | H3' | 123.2° | 122.5° |
| C2' | C3' | C4' | O4' | 36.5° | 2.0° |
| C2' | C3' | C4' | C5' | 155.1° | 121.6° |
| C2' | C3' | C4' | H4' | 87.3° | 117.4° |
| C2' | C3' | O3' | HO3' | 180.0° | 180.0° |
| H2' | C2' | O2' | CM2 | 47.6° | 29.3° |
| H2' | C2' | C3' | C4' | 164.1° | 97.3° |
| H2' | C2' | C3' | O3' | 77.5° | 143.8° |
| H2' | C2' | C3' | H3' | 40.7° | 21.4° |
| O2' | CM2 | HM21 | HM22 | 125.2° | 120.1° |
| O2' | CM2 | HM21 | HM23 | 125.3° | 120.0° |
| O2' | CM2 | HM22 | HM23 | 114.3° | 120.0° |
| HM21 | CM2 | HM22 | HM23 | 114.3° | 119.9° |
| C4' | C3' | O3' | H3' | 123.9° | 122.6° |
| C3' | C4' | O4' | C5' | 122.5° | 119.6° |
| C3' | C4' | O4' | H4' | 120.0° | 119.4° |
| C3' | C4' | C5' | H4' | 120.2° | 121.0° |
| C4' | C3' | O3' | HO3' | 67.1° | 65.2° |
| C3' | C4' | C5' | O5' | 48.3° | 180.0° |
| C3' | C4' | C5' | H5' | 173.5° | 60.0° |
| C3' | C4' | C5' | H5'' | 77.0° | 60.0° |
| O3' | C3' | C4' | O4' | 155.7° | 120.8° |
| O3' | C3' | C4' | C5' | 85.7° | 119.6° |
| O3' | C3' | C4' | H4' | 31.9° | 1.4° |
| H3' | C3' | C4' | O4' | 86.1° | 116.7° |
| H3' | C3' | C4' | C5' | 32.5° | 2.9° |
| H3' | C3' | C4' | H4' | 150.1° | 123.9° |
| H3' | C3' | O3' | HO3' | 56.8° | 57.5° |
| O4' | C4' | C5' | H4' | 123.8° | 121.1° |
| O4' | C4' | C5' | O5' | 67.7° | 62.1° |
| O4' | C4' | C5' | H5' | 57.6° | 177.9° |
| O4' | C4' | C5' | H5'' | 167.1° | 58.0° |
| C4' | C5' | O5' | H5' | 125.3° | 120.0° |
| C4' | C5' | O5' | H5'' | 125.3° | 120.0° |
| C4' | C5' | H5' | H5'' | 118.0° | 119.9° |
| C4' | C5' | O5' | P | 179.5° | 180.0° |
| H4' | C4' | C5' | O5' | 168.5° | 59.0° |
| H4' | C4' | C5' | H5' | 66.3° | 61.0° |
| H4' | C4' | C5' | H5'' | 43.2° | 179.1° |
| O5' | C5' | H5' | H5'' | 117.9° | 120.0° |
| C5' | O5' | P | OP1 | 174.0° | 60.0° |
| C5' | O5' | P | OP2 | 41.9° | 180.0° |
| C5' | O5' | P | OP3 | 71.3° | 60.0° |
| H5' | C5' | O5' | P | 55.3° | 60.0° |
| H5'' | C5' | O5' | P | 54.2° | 60.0° |
| O5' | P | OP1 | OP2 | 125.4° | 120.0° |
| O5' | P | OP1 | OP3 | 112.4° | 120.0° |
| O5' | P | OP2 | OP3 | 111.5° | 120.1° |
| O5' | P | OP2 | HOP2 | 180.0° | 179.9° |
| O5' | P | OP3 | HOP3 | 180.0° | 60.1° |
| OP1 | P | OP2 | OP3 | 122.7° | 120.0° |
| OP1 | P | OP2 | HOP2 | 54.2° | 60.0° |
| OP1 | P | OP3 | HOP3 | 64.3° | 180.0° |
| OP2 | P | OP3 | HOP3 | 65.8° | 60.0° |
| OP3 | P | OP2 | HOP2 | 68.5° | 60.0° |
