OKT
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| S01 | P | sing | 2.12Å | 2.03Å | |
| P | OP1 | doub | 1.48Å | 1.66Å | |
| P | O5' | sing | 1.61Å | 1.72Å | |
| O4 | C4 | doub | 1.22Å | 1.39Å | |
| C5 | C4 | sing | 1.42Å | 1.38Å | |
| C5 | C6 | doub | 1.35Å | 1.38Å | |
| C4 | N3 | sing | 1.35Å | 1.33Å | |
| O5' | C5' | sing | 1.43Å | 1.42Å | |
| C6 | N1 | sing | 1.37Å | 1.32Å | |
| N3 | C2 | sing | 1.35Å | 1.33Å | |
| C5' | C4' | sing | 1.53Å | 1.40Å | |
| N1 | C2 | sing | 1.35Å | 1.34Å | |
| N1 | C1' | sing | 1.47Å | 1.45Å | |
| O4' | C4' | sing | 1.44Å | 1.57Å | |
| O4' | C1' | sing | 1.44Å | 1.31Å | |
| C2 | O2 | doub | 1.22Å | 1.19Å | |
| C4' | C3' | sing | 1.54Å | 1.53Å | |
| C1' | C2' | sing | 1.55Å | 1.63Å | |
| C3' | C2' | sing | 1.55Å | 1.33Å | |
| C3' | O3' | sing | 1.43Å | 1.49Å | |
| C2' | O01 | sing | 1.43Å | 1.44Å | |
| O01 | C02 | sing | 1.43Å | 1.37Å | |
| C02 | H1 | sing | 1.09Å | 1.10Å | |
| C02 | H2 | sing | 1.09Å | 1.10Å | |
| C02 | H3 | sing | 1.09Å | 1.10Å | |
| C1' | H4 | sing | 1.09Å | 1.10Å | |
| C2' | H5 | sing | 1.09Å | 1.10Å | |
| C3' | H6 | sing | 1.09Å | 1.10Å | |
| C4' | H7 | sing | 1.09Å | 1.10Å | |
| C5 | H8 | sing | 1.08Å | 1.08Å | |
| C5' | H9 | sing | 1.09Å | 1.10Å | |
| C5' | H10 | sing | 1.09Å | 1.10Å | |
| C6 | H11 | sing | 1.08Å | 1.08Å | |
| N3 | H12 | sing | 0.97Å | 1.00Å | |
| O3' | H13 | sing | 0.97Å | 0.95Å | |
| S01 | H15 | sing | 1.35Å | 1.30Å | |
| OP3 | P | sing | 1.61Å | 44.94Å | |
| HOP3 | OP3 | sing | 0.97Å | 0.00Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| S01 | P | OP1 | 110.9° | 109.5° |
| S01 | P | O5' | 110.6° | 109.4° |
| P | S01 | H15 | 102.0° | 103.0° |
| S01 | P | OP3 | 43.0° | 109.5° |
| OP1 | P | O5' | 109.4° | 109.5° |
| OP1 | P | OP3 | 69.8° | 109.5° |
| P | O5' | C5' | 117.0° | 123.0° |
| O5' | P | OP3 | 138.0° | 109.5° |
| O4 | C4 | C5 | 119.8° | 120.3° |
| O4 | C4 | N3 | 120.2° | 120.3° |
| C4 | C5 | C6 | 118.8° | 119.1° |
| C5 | C4 | N3 | 120.0° | 119.4° |
| C4 | C5 | H8 | 120.6° | 120.5° |
| C5 | C6 | N1 | 118.7° | 119.7° |
| C6 | C5 | H8 | 120.6° | 120.4° |
| C5 | C6 | H11 | 120.6° | 120.2° |
| C4 | N3 | C2 | 120.5° | 120.3° |
| C4 | N3 | H12 | 119.8° | 119.8° |
| O5' | C5' | C4' | 109.0° | 109.5° |
| O5' | C5' | H9 | 109.6° | 109.4° |
| O5' | C5' | H10 | 109.6° | 109.5° |
| C6 | N1 | C2 | 121.7° | 120.6° |
| C6 | N1 | C1' | 118.5° | 119.7° |
| N1 | C6 | H11 | 120.7° | 120.1° |
| N3 | C2 | N1 | 120.3° | 120.9° |
| N3 | C2 | O2 | 119.2° | 119.6° |
| C2 | N3 | H12 | 119.8° | 119.9° |
| C5' | C4' | O4' | 111.1° | 110.0° |
| C5' | C4' | C3' | 110.2° | 109.9° |
| C5' | C4' | H7 | 112.2° | 109.9° |
| C4' | C5' | H9 | 109.6° | 109.4° |
| C4' | C5' | H10 | 109.6° | 109.5° |
| C2 | N1 | C1' | 119.7° | 119.7° |
| N1 | C2 | O2 | 120.5° | 119.5° |
| N1 | C1' | O4' | 110.9° | 110.7° |
| N1 | C1' | C2' | 110.2° | 110.6° |
| N1 | C1' | H4 | 109.5° | 110.6° |
| C4' | O4' | C1' | 106.4° | 107.0° |
| O4' | C4' | C3' | 103.1° | 107.3° |
| O4' | C4' | H7 | 109.7° | 109.9° |
| O4' | C1' | C2' | 106.9° | 103.5° |
| O4' | C1' | H4 | 111.8° | 110.7° |
| C4' | C3' | C2' | 102.5° | 104.2° |
| C4' | C3' | O3' | 110.7° | 110.5° |
| C4' | C3' | H6 | 109.6° | 110.6° |
| C3' | C4' | H7 | 110.2° | 109.9° |
| C1' | C2' | C3' | 105.8° | 102.1° |
| C1' | C2' | O01 | 109.0° | 110.9° |
| C2' | C1' | H4 | 107.3° | 110.6° |
| C1' | C2' | H5 | 108.3° | 110.9° |
| C2' | C3' | O3' | 111.1° | 110.5° |
| C3' | C2' | O01 | 110.2° | 110.9° |
| C3' | C2' | H5 | 112.6° | 111.0° |
| C2' | C3' | H6 | 112.7° | 110.5° |
| O3' | C3' | H6 | 110.1° | 110.4° |
| C3' | O3' | H13 | 109.5° | 114.0° |
| C2' | O01 | C02 | 114.1° | 114.0° |
| O01 | C2' | H5 | 110.7° | 110.8° |
| O01 | C02 | H1 | 109.5° | 109.5° |
| O01 | C02 | H2 | 109.5° | 109.5° |
| O01 | C02 | H3 | 109.4° | 109.5° |
| H1 | C02 | H2 | 109.4° | 109.5° |
| H1 | C02 | H3 | 109.5° | 109.5° |
| H2 | C02 | H3 | 109.5° | 109.4° |
| H9 | C5' | H10 | 109.5° | 109.5° |
| P | OP3 | HOP3 | 90.0° | 114.0° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| S01 | P | OP1 | O5' | 122.3° | 120.0° |
| S01 | P | OP1 | OP3 | 13.0° | 120.0° |
| S01 | P | O5' | OP3 | 41.4° | 120.0° |
| S01 | P | O5' | C5' | 133.5° | 65.1° |
| S01 | P | OP3 | HOP3 | 90.0° | 60.0° |
| OP1 | P | O5' | OP3 | 81.1° | 120.0° |
| OP1 | P | O5' | C5' | 11.0° | 54.9° |
| OP1 | P | S01 | H15 | 180.0° | 180.0° |
| OP1 | P | OP3 | HOP3 | 90.0° | 60.0° |
| P | O5' | C5' | C4' | 172.0° | 180.0° |
| P | O5' | C5' | H9 | 52.1° | 60.1° |
| P | O5' | C5' | H10 | 68.1° | 59.9° |
| O5' | P | S01 | H15 | 58.4° | 60.0° |
| O5' | P | OP3 | HOP3 | 90.0° | 179.9° |
| O4 | C4 | C5 | N3 | 180.0° | 180.0° |
| O4 | C4 | C5 | C6 | 180.0° | 179.8° |
| O4 | C4 | N3 | C2 | 180.0° | 180.0° |
| O4 | C4 | C5 | H8 | 0.0° | 0.1° |
| O4 | C4 | N3 | H12 | 0.0° | 0.1° |
| C4 | C5 | C6 | H8 | 180.0° | 179.7° |
| C4 | C5 | C6 | N1 | 0.0° | 0.3° |
| C5 | C4 | N3 | C2 | 0.0° | 0.0° |
| C4 | C5 | C6 | H11 | 180.0° | 180.0° |
| C5 | C4 | N3 | H12 | 180.0° | 180.0° |
| C6 | C5 | C4 | N3 | 0.0° | 0.3° |
| C5 | C6 | N1 | H11 | 180.0° | 179.8° |
| C5 | C6 | N1 | C2 | 0.1° | 0.1° |
| C5 | C6 | N1 | C1' | 180.0° | 180.0° |
| C4 | N3 | C2 | H12 | 180.0° | 180.0° |
| C4 | N3 | C2 | N1 | 0.0° | 0.3° |
| C4 | N3 | C2 | O2 | 180.0° | 180.0° |
| N3 | C4 | C5 | H8 | 180.0° | 180.0° |
| O5' | C5' | C4' | H9 | 119.9° | 119.9° |
| O5' | C5' | C4' | H10 | 119.9° | 120.1° |
| O5' | C5' | C4' | O4' | 1.3° | 67.2° |
| O5' | C5' | C4' | C3' | 112.3° | 175.0° |
| O5' | C5' | C4' | H7 | 124.5° | 53.9° |
| O5' | C5' | H9 | H10 | 120.2° | 120.0° |
| C5' | O5' | P | OP3 | 92.1° | 174.9° |
| C6 | N1 | C2 | N3 | 0.1° | 0.4° |
| C6 | N1 | C2 | C1' | 179.9° | 179.9° |
| C6 | N1 | C1' | O4' | 17.1° | 130.9° |
| C6 | N1 | C2 | O2 | 180.0° | 179.9° |
| C6 | N1 | C1' | C2' | 101.2° | 115.0° |
| C6 | N1 | C1' | H4 | 140.9° | 7.9° |
| N1 | C6 | C5 | H8 | 180.0° | 179.9° |
| N3 | C2 | N1 | O2 | 180.0° | 179.7° |
| N3 | C2 | N1 | C1' | 180.0° | 179.7° |
| C5' | C4' | O4' | C3' | 118.0° | 119.5° |
| C5' | C4' | O4' | H7 | 124.6° | 121.1° |
| C5' | C4' | O4' | C1' | 141.4° | 146.0° |
| C5' | C4' | C3' | H7 | 124.4° | 121.1° |
| C5' | C4' | C3' | C2' | 156.8° | 121.5° |
| C5' | C4' | C3' | O3' | 84.8° | 119.7° |
| C5' | C4' | C3' | H6 | 36.8° | 2.8° |
| C4' | C5' | H9 | H10 | 120.2° | 120.0° |
| C2 | N1 | C1' | O4' | 162.9° | 49.2° |
| C2 | N1 | C1' | C2' | 78.9° | 64.9° |
| C2 | N1 | C1' | H4 | 39.0° | 172.2° |
| C2 | N1 | C6 | H11 | 179.9° | 179.7° |
| N1 | C2 | N3 | H12 | 180.0° | 179.6° |
| N1 | C1' | O4' | C4' | 122.4° | 158.6° |
| N1 | C1' | O4' | C2' | 120.3° | 118.5° |
| N1 | C1' | O4' | H4 | 122.6° | 122.9° |
| C1' | N1 | C2 | O2 | 0.0° | 0.0° |
| N1 | C1' | C2' | H4 | 119.2° | 122.9° |
| N1 | C1' | C2' | C3' | 97.4° | 155.7° |
| N1 | C1' | C2' | O01 | 144.2° | 86.1° |
| N1 | C1' | C2' | H5 | 23.7° | 37.4° |
| C1' | N1 | C6 | H11 | 0.0° | 0.2° |
| O4' | C4' | C3' | H7 | 117.0° | 119.4° |
| C4' | O4' | C1' | C2' | 2.2° | 40.1° |
| O4' | C4' | C3' | C2' | 38.1° | 2.0° |
| O4' | C4' | C3' | O3' | 156.6° | 120.7° |
| C4' | O4' | C1' | H4 | 115.0° | 78.4° |
| O4' | C4' | C3' | H6 | 81.8° | 116.7° |
| O4' | C4' | C5' | H9 | 121.2° | 172.9° |
| O4' | C4' | C5' | H10 | 118.6° | 52.9° |
| C1' | O4' | C4' | C3' | 23.4° | 26.5° |
| O4' | C1' | C2' | H4 | 120.1° | 118.5° |
| O4' | C1' | C2' | C3' | 23.3° | 37.1° |
| O4' | C1' | C2' | O01 | 95.1° | 155.3° |
| O4' | C1' | C2' | H5 | 144.4° | 81.2° |
| C1' | O4' | C4' | H7 | 94.0° | 92.9° |
| O2 | C2 | N3 | H12 | 0.0° | 0.1° |
| C4' | C3' | C2' | C1' | 36.7° | 20.9° |
| C4' | C3' | C2' | O3' | 118.2° | 118.7° |
| C4' | C3' | C2' | H6 | 117.7° | 118.7° |
| C4' | C3' | O3' | H6 | 121.3° | 122.6° |
| C4' | C3' | C2' | O01 | 81.0° | 139.1° |
| C4' | C3' | C2' | H5 | 154.8° | 97.3° |
| C3' | C4' | C5' | H9 | 7.6° | 55.1° |
| C3' | C4' | C5' | H10 | 127.8° | 65.0° |
| C4' | C3' | O3' | H13 | 180.0° | 65.1° |
| C1' | C2' | C3' | O01 | 117.7° | 118.1° |
| C1' | C2' | C3' | H5 | 118.1° | 118.2° |
| C1' | C2' | C3' | O3' | 154.9° | 97.8° |
| C1' | C2' | O01 | H5 | 119.1° | 123.6° |
| C1' | C2' | O01 | C02 | 72.9° | 150.0° |
| C1' | C2' | C3' | H6 | 81.1° | 139.7° |
| C2' | C3' | O3' | H6 | 125.5° | 122.5° |
| C3' | C2' | O01 | H5 | 125.3° | 123.7° |
| C3' | C2' | O01 | C02 | 171.4° | 97.3° |
| C3' | C2' | C1' | H4 | 143.4° | 81.4° |
| C2' | C3' | C4' | H7 | 78.9° | 117.4° |
| C2' | C3' | O3' | H13 | 66.9° | 180.0° |
| O3' | C3' | C2' | O01 | 37.2° | 20.3° |
| O3' | C3' | C2' | H5 | 87.0° | 144.0° |
| O3' | C3' | C4' | H7 | 39.6° | 1.3° |
| C2' | O01 | C02 | H1 | 180.0° | 180.0° |
| C2' | O01 | C02 | H2 | 60.0° | 60.0° |
| C2' | O01 | C02 | H3 | 60.0° | 60.0° |
| O01 | C2' | C1' | H4 | 25.0° | 36.7° |
| O01 | C2' | C3' | H6 | 161.2° | 102.2° |
| O01 | C02 | H1 | H2 | 120.0° | 120.1° |
| O01 | C02 | H1 | H3 | 120.0° | 120.0° |
| O01 | C02 | H2 | H3 | 120.0° | 120.0° |
| C02 | O01 | C2' | H5 | 46.2° | 26.4° |
| H1 | C02 | H2 | H3 | 120.0° | 120.0° |
| H4 | C1' | C2' | H5 | 95.6° | 160.3° |
| H5 | C2' | C3' | H6 | 37.1° | 21.5° |
| H6 | C3' | C4' | H7 | 161.2° | 123.9° |
| H6 | C3' | O3' | H13 | 58.7° | 57.5° |
| H7 | C4' | C5' | H9 | 115.6° | 66.0° |
| H7 | C4' | C5' | H10 | 4.6° | 174.0° |
| H8 | C5 | C6 | H11 | 0.0° | 0.3° |
| H15 | S01 | P | OP3 | 162.0° | 60.0° |
