OKQ
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| O5' | C5' | sing | 1.43Å | 1.43Å | |
| C5' | C4' | sing | 1.53Å | 1.51Å | |
| C4' | O4' | sing | 1.44Å | 1.45Å | |
| C4' | C3' | sing | 1.54Å | 1.53Å | |
| O4' | C1' | sing | 1.44Å | 1.42Å | |
| C6 | C5 | doub | 1.35Å | 1.37Å | |
| C6 | N1 | sing | 1.36Å | 1.32Å | |
| C3' | C2' | sing | 1.55Å | 1.52Å | |
| C3' | O3' | sing | 1.43Å | 1.43Å | |
| C5 | C4 | sing | 1.41Å | 1.38Å | |
| C2' | C1' | sing | 1.55Å | 1.53Å | |
| C2' | O2' | sing | 1.43Å | 1.41Å | |
| C1' | N1 | sing | 1.46Å | 1.47Å | |
| N1 | C2 | sing | 1.35Å | 1.33Å | |
| C4 | N4 | sing | 1.38Å | 1.45Å | |
| C4 | N3 | doub | 1.33Å | 1.32Å | |
| C2 | N3 | sing | 1.33Å | 1.33Å | |
| C2 | O2 | doub | 1.22Å | 1.18Å | |
| CM2 | O2' | sing | 1.43Å | 1.40Å | |
| C5 | H1 | sing | 1.08Å | 1.08Å | |
| C6 | H2 | sing | 1.08Å | 1.08Å | |
| C1' | H3 | sing | 1.09Å | 1.10Å | |
| C2' | H4 | sing | 1.09Å | 1.10Å | |
| C3' | H5 | sing | 1.09Å | 1.10Å | |
| C4' | H6 | sing | 1.09Å | 1.10Å | |
| C5' | H7 | sing | 1.09Å | 1.10Å | |
| C5' | H8 | sing | 1.09Å | 1.10Å | |
| CM2 | H9 | sing | 1.09Å | 1.10Å | |
| CM2 | H10 | sing | 1.09Å | 1.10Å | |
| CM2 | H11 | sing | 1.09Å | 1.10Å | |
| N4 | H12 | sing | 0.97Å | 1.00Å | |
| N4 | H13 | sing | 0.97Å | 1.00Å | |
| O3' | H14 | sing | 0.97Å | 0.95Å | |
| O5' | P1 | sing | 1.61Å | 0.97Å | |
| O1 | P1 | doub | 1.48Å | 44.42Å | |
| H17 | S1 | sing | 1.34Å | 0.00Å | |
| S1 | P1 | sing | 2.12Å | 44.42Å | |
| OP3 | P1 | sing | 1.61Å | 44.42Å | |
| HOP3 | OP3 | sing | 0.97Å | 0.00Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O5' | C5' | C4' | 112.0° | 109.5° |
| O5' | C5' | H7 | 108.9° | 109.5° |
| O5' | C5' | H8 | 108.8° | 109.4° |
| C5' | O5' | P1 | 109.5° | 123.0° |
| C5' | C4' | O4' | 108.8° | 109.9° |
| C5' | C4' | C3' | 115.3° | 110.0° |
| C5' | C4' | H6 | 108.9° | 109.9° |
| C4' | C5' | H7 | 108.8° | 109.5° |
| C4' | C5' | H8 | 108.8° | 109.4° |
| O4' | C4' | C3' | 105.4° | 107.4° |
| C4' | O4' | C1' | 109.3° | 106.9° |
| O4' | C4' | H6 | 109.6° | 109.9° |
| C4' | C3' | C2' | 101.6° | 104.2° |
| C4' | C3' | O3' | 108.8° | 110.5° |
| C4' | C3' | H5 | 111.8° | 110.6° |
| C3' | C4' | H6 | 108.7° | 109.6° |
| O4' | C1' | C2' | 105.6° | 103.6° |
| O4' | C1' | N1 | 108.5° | 110.6° |
| O4' | C1' | H3 | 110.1° | 110.6° |
| C5 | C6 | N1 | 118.7° | 119.3° |
| C6 | C5 | C4 | 118.7° | 119.0° |
| C6 | C5 | H1 | 120.6° | 120.5° |
| C5 | C6 | H2 | 120.6° | 120.3° |
| C6 | N1 | C1' | 120.9° | 119.9° |
| C6 | N1 | C2 | 121.9° | 120.3° |
| N1 | C6 | H2 | 120.7° | 120.3° |
| C2' | C3' | O3' | 108.5° | 110.5° |
| C3' | C2' | C1' | 100.5° | 102.1° |
| C3' | C2' | O2' | 114.7° | 110.9° |
| C3' | C2' | H4 | 109.3° | 111.0° |
| C2' | C3' | H5 | 111.9° | 110.5° |
| O3' | C3' | H5 | 113.5° | 110.4° |
| C3' | O3' | H14 | 109.5° | 114.0° |
| C5 | C4 | N4 | 120.0° | 120.2° |
| C5 | C4 | N3 | 120.0° | 119.6° |
| C4 | C5 | H1 | 120.7° | 120.5° |
| C1' | C2' | O2' | 112.1° | 110.9° |
| C2' | C1' | N1 | 114.7° | 110.6° |
| C2' | C1' | H3 | 108.6° | 110.6° |
| C1' | C2' | H4 | 109.1° | 110.9° |
| C2' | O2' | CM2 | 114.0° | 114.0° |
| O2' | C2' | H4 | 110.7° | 110.7° |
| C1' | N1 | C2 | 117.2° | 119.8° |
| N1 | C1' | H3 | 109.3° | 110.6° |
| N1 | C2 | N3 | 120.3° | 121.1° |
| N1 | C2 | O2 | 119.2° | 119.4° |
| N4 | C4 | N3 | 120.0° | 120.2° |
| C4 | N4 | H12 | 120.0° | 120.0° |
| C4 | N4 | H13 | 120.0° | 120.0° |
| C4 | N3 | C2 | 120.5° | 120.7° |
| N3 | C2 | O2 | 120.5° | 119.5° |
| O2' | CM2 | H9 | 109.5° | 109.5° |
| O2' | CM2 | H10 | 109.5° | 109.4° |
| O2' | CM2 | H11 | 109.5° | 109.5° |
| H7 | C5' | H8 | 109.5° | 109.5° |
| H9 | CM2 | H10 | 109.5° | 109.5° |
| H9 | CM2 | H11 | 109.5° | 109.5° |
| H10 | CM2 | H11 | 109.5° | 109.5° |
| H12 | N4 | H13 | 120.0° | 120.0° |
| O5' | P1 | O1 | 118.3° | 109.5° |
| O5' | P1 | S1 | 118.3° | 109.5° |
| O5' | P1 | OP3 | 118.3° | 109.4° |
| O1 | P1 | S1 | NaN° | 109.5° |
| O1 | P1 | OP3 | NaN° | 109.5° |
| H17 | S1 | P1 | 90.0° | 103.0° |
| S1 | P1 | OP3 | NaN° | 109.5° |
| P1 | OP3 | HOP3 | 90.0° | 114.0° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O5' | C5' | C4' | H7 | 120.4° | 120.0° |
| O5' | C5' | C4' | H8 | 120.4° | 119.9° |
| O5' | C5' | C4' | O4' | 39.3° | 66.4° |
| O5' | C5' | C4' | C3' | 157.4° | 175.5° |
| O5' | C5' | C4' | H6 | 80.2° | 54.7° |
| O5' | C5' | H7 | H8 | 118.9° | 120.0° |
| C5' | O5' | P1 | O1 | 73.4° | 55.0° |
| C5' | O5' | P1 | S1 | 73.4° | 65.0° |
| C5' | O5' | P1 | OP3 | 73.4° | 175.0° |
| C5' | C4' | O4' | C3' | 124.2° | 119.7° |
| C5' | C4' | O4' | H6 | 118.9° | 121.1° |
| C5' | C4' | C3' | H6 | 122.5° | 121.0° |
| C5' | C4' | O4' | C1' | 116.7° | 146.0° |
| C5' | C4' | C3' | C2' | 89.5° | 121.5° |
| C5' | C4' | C3' | O3' | 156.2° | 119.8° |
| C5' | C4' | C3' | H5 | 30.1° | 2.8° |
| C4' | C5' | H7 | H8 | 118.9° | 120.0° |
| C4' | C5' | O5' | P1 | 61.9° | 180.0° |
| O4' | C4' | C3' | H6 | 117.5° | 119.3° |
| O4' | C4' | C3' | C2' | 30.5° | 1.8° |
| O4' | C4' | C3' | O3' | 83.8° | 120.5° |
| C4' | O4' | C1' | C2' | 18.9° | 39.8° |
| C4' | O4' | C1' | N1 | 142.3° | 158.4° |
| C4' | O4' | C1' | H3 | 98.1° | 78.8° |
| O4' | C4' | C3' | H5 | 150.0° | 116.9° |
| O4' | C4' | C5' | H7 | 81.1° | 173.6° |
| O4' | C4' | C5' | H8 | 159.6° | 53.5° |
| C3' | C4' | O4' | C1' | 7.4° | 26.2° |
| C4' | C3' | C2' | O3' | 114.6° | 118.7° |
| C4' | C3' | C2' | H5 | 119.4° | 118.8° |
| C4' | C3' | O3' | H5 | 125.2° | 122.7° |
| C4' | C3' | C2' | C1' | 40.3° | 20.9° |
| C4' | C3' | C2' | O2' | 160.7° | 139.1° |
| C4' | C3' | C2' | H4 | 74.4° | 97.3° |
| C3' | C4' | C5' | H7 | 37.0° | 55.5° |
| C3' | C4' | C5' | H8 | 82.2° | 64.6° |
| C4' | C3' | O3' | H14 | 180.0° | 65.2° |
| O4' | C1' | N1 | C6 | 72.5° | 128.5° |
| O4' | C1' | C2' | C3' | 37.3° | 36.9° |
| O4' | C1' | C2' | N1 | 119.4° | 118.6° |
| O4' | C1' | C2' | H3 | 118.0° | 118.6° |
| O4' | C1' | C2' | O2' | 159.5° | 155.2° |
| O4' | C1' | N1 | H3 | 120.0° | 122.9° |
| O4' | C1' | N1 | C2 | 107.3° | 51.4° |
| O4' | C1' | C2' | H4 | 77.5° | 81.3° |
| C1' | O4' | C4' | H6 | 124.3° | 92.9° |
| C5 | C6 | N1 | H2 | 180.0° | 179.1° |
| C6 | C5 | C4 | H1 | 180.0° | 179.5° |
| C5 | C6 | N1 | C1' | 179.9° | 179.4° |
| C5 | C6 | N1 | C2 | 0.1° | 0.6° |
| C6 | C5 | C4 | N4 | 179.8° | 179.4° |
| C6 | C5 | C4 | N3 | 0.1° | 0.5° |
| N1 | C6 | C5 | C4 | 0.1° | 0.8° |
| C6 | N1 | C1' | C2' | 45.3° | 117.2° |
| C6 | N1 | C1' | C2 | 179.8° | 180.0° |
| C6 | N1 | C2 | N3 | 0.3° | 0.0° |
| C6 | N1 | C2 | O2 | 180.0° | 179.7° |
| N1 | C6 | C5 | H1 | 179.9° | 179.7° |
| C6 | N1 | C1' | H3 | 167.5° | 5.6° |
| C2' | C3' | O3' | H5 | 125.1° | 122.5° |
| C3' | C2' | C1' | O2' | 122.2° | 118.2° |
| C3' | C2' | C1' | H4 | 114.8° | 118.3° |
| C3' | C2' | O2' | H4 | 124.2° | 123.7° |
| C3' | C2' | C1' | N1 | 156.7° | 155.5° |
| C3' | C2' | O2' | CM2 | 68.8° | 97.3° |
| C3' | C2' | C1' | H3 | 80.8° | 81.6° |
| C2' | C3' | C4' | H6 | 148.0° | 117.5° |
| C2' | C3' | O3' | H14 | 70.2° | 180.0° |
| O3' | C3' | C2' | C1' | 74.3° | 97.8° |
| O3' | C3' | C2' | O2' | 46.1° | 20.4° |
| O3' | C3' | C2' | H4 | 171.0° | 143.9° |
| O3' | C3' | C4' | H6 | 33.7° | 1.2° |
| C5 | C4 | N4 | N3 | 179.9° | 179.9° |
| C5 | C4 | N3 | C2 | 0.1° | 0.1° |
| C4 | C5 | C6 | H2 | 179.9° | 180.0° |
| C5 | C4 | N4 | H12 | 179.8° | 180.0° |
| C5 | C4 | N4 | H13 | 0.1° | 0.1° |
| C1' | C2' | O2' | H4 | 122.1° | 123.6° |
| C2' | C1' | N1 | H3 | 122.2° | 122.9° |
| C2' | C1' | N1 | C2 | 134.9° | 62.8° |
| C1' | C2' | O2' | CM2 | 177.5° | 150.0° |
| C1' | C2' | C3' | H5 | 159.8° | 139.7° |
| O2' | C2' | C1' | N1 | 81.1° | 86.3° |
| O2' | C2' | C1' | H3 | 41.4° | 36.6° |
| O2' | C2' | C3' | H5 | 79.9° | 102.1° |
| C2' | O2' | CM2 | H9 | 180.0° | 179.9° |
| C2' | O2' | CM2 | H10 | 60.0° | 60.0° |
| C2' | O2' | CM2 | H11 | 60.0° | 60.0° |
| C1' | N1 | C2 | N3 | 179.9° | 180.0° |
| C1' | N1 | C2 | O2 | 0.2° | 0.3° |
| C1' | N1 | C6 | H2 | 0.1° | 0.3° |
| N1 | C1' | C2' | H4 | 41.9° | 37.2° |
| N1 | C2 | N3 | C4 | 0.3° | 0.3° |
| N1 | C2 | N3 | O2 | 179.7° | 179.7° |
| C2 | N1 | C6 | H2 | 179.9° | 179.7° |
| C2 | N1 | C1' | H3 | 12.7° | 174.3° |
| N4 | C4 | N3 | C2 | 179.9° | 180.0° |
| N4 | C4 | C5 | H1 | 0.2° | 0.0° |
| C4 | N4 | H12 | H13 | 180.0° | 179.9° |
| C4 | N3 | C2 | O2 | 180.0° | 180.0° |
| N3 | C4 | C5 | H1 | 179.9° | 180.0° |
| N3 | C4 | N4 | H12 | 0.0° | 0.1° |
| N3 | C4 | N4 | H13 | 180.0° | 180.0° |
| CM2 | O2' | C2' | H4 | 55.3° | 26.4° |
| O2' | CM2 | H9 | H10 | 120.0° | 120.0° |
| O2' | CM2 | H9 | H11 | 120.0° | 120.0° |
| O2' | CM2 | H10 | H11 | 120.0° | 120.0° |
| H1 | C5 | C6 | H2 | 0.1° | 0.6° |
| H3 | C1' | C2' | H4 | 164.5° | 160.1° |
| H4 | C2' | C3' | H5 | 45.1° | 21.5° |
| H5 | C3' | C4' | H6 | 92.4° | 123.8° |
| H5 | C3' | O3' | H14 | 54.9° | 57.5° |
| H6 | C4' | C5' | H7 | 159.5° | 65.4° |
| H6 | C4' | C5' | H8 | 40.2° | 174.6° |
| H7 | C5' | O5' | P1 | 177.7° | 60.0° |
| H8 | C5' | O5' | P1 | 58.4° | 60.0° |
| H9 | CM2 | H10 | H11 | 120.0° | 120.0° |
| O5' | P1 | O1 | S1 | 90.0° | 120.0° |
| O5' | P1 | O1 | OP3 | 90.0° | 120.0° |
| O5' | P1 | S1 | H17 | 90.0° | 180.0° |
| O5' | P1 | S1 | OP3 | 90.0° | 120.0° |
| O5' | P1 | OP3 | HOP3 | 90.0° | 60.0° |
| O1 | P1 | S1 | H17 | 90.0° | 60.0° |
| O1 | P1 | S1 | OP3 | 90.0° | 120.0° |
| O1 | P1 | OP3 | HOP3 | 90.0° | 180.0° |
| H17 | S1 | P1 | OP3 | 90.0° | 60.0° |
| S1 | P1 | OP3 | HOP3 | 90.0° | 60.0° |
