OJQ

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
O	C	sing	1.36Å	1.46Å
C	ND	doub	1.31Å	1.33Å	Aromatic
C	CA	sing	1.42Å	1.48Å	Aromatic
ND	OG	sing	1.21Å	1.32Å	Aromatic
CA	N	sing	1.40Å	1.43Å
CA	CB	doub	1.35Å	1.37Å	Aromatic
N	C4A	sing	1.47Å	1.50Å
C2A	C2	sing	1.51Å	1.52Å
OG	CB	sing	1.34Å	1.38Å	Aromatic
O1	C3	sing	1.36Å	1.34Å
O3P	P	doub	1.48Å	1.51Å
C2	C3	doub	1.39Å	1.39Å	Aromatic
C2	N1	sing	1.32Å	1.35Å	Aromatic
C3	C4	sing	1.39Å	1.39Å	Aromatic
N1	C6	doub	1.32Å	1.33Å	Aromatic
O4P	P	sing	1.61Å	1.63Å
O4P	C5A	sing	1.43Å	1.42Å
C4	C4A	sing	1.51Å	1.52Å
C4	C5	doub	1.39Å	1.40Å	Aromatic
C6	C5	sing	1.38Å	1.40Å	Aromatic
C5	C5A	sing	1.51Å	1.51Å
P	O1P	sing	1.61Å	1.52Å
P	O2P	sing	1.61Å	1.50Å
C6	H6	sing	1.08Å	1.08Å
N	H1	sing	1.01Å	1.00Å
O	H4	sing	0.97Å	0.95Å
CB	HB1	sing	1.08Å	1.08Å
C2A	H2A3	sing	1.09Å	1.10Å
C2A	H2A1	sing	1.09Å	1.10Å
C2A	H2A2	sing	1.09Å	1.10Å
C4A	H4A	sing	1.09Å	1.10Å
C4A	H2	sing	1.09Å	1.10Å
C5A	H5A2	sing	1.09Å	1.10Å
C5A	H5A1	sing	1.09Å	1.10Å
O1	H3	sing	0.97Å	0.95Å
O1P	H5	sing	0.97Å	0.95Å
O2P	H7	sing	0.97Å	0.95Å
N	H12	sing	1.01Å	1.00Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
O	C	ND	125.2°	126.9°
O	C	CA	121.8°	126.8°
C	O	H4	109.5°	114.0°
ND	C	CA	112.8°	106.3°
C	ND	OG	103.6°	111.5°
C	CA	N	126.2°	128.0°
C	CA	CB	101.5°	103.9°
ND	OG	CB	114.4°	111.8°
N	CA	CB	131.5°	128.0°
CA	N	C4A	116.1°	109.5°
CA	N	H1	107.8°	109.5°
CA	N	H12	107.8°	109.5°
CA	CB	OG	107.3°	106.6°
CA	CB	HB1	126.3°	126.7°
N	C4A	C4	107.4°	109.5°
C4A	N	H1	107.8°	109.5°
N	C4A	H4A	110.0°	109.5°
N	C4A	H2	110.0°	109.4°
C4A	N	H12	107.8°	109.5°
C2A	C2	C3	121.6°	119.6°
C2A	C2	N1	118.1°	119.6°
C2	C2A	H2A3	109.5°	109.5°
C2	C2A	H2A1	109.5°	109.5°
C2	C2A	H2A2	109.5°	109.4°
OG	CB	HB1	126.3°	126.7°
O1	C3	C2	120.0°	120.5°
O1	C3	C4	120.4°	120.5°
C3	O1	H3	109.5°	114.0°
O3P	P	O4P	102.6°	109.5°
O3P	P	O1P	112.2°	109.5°
O3P	P	O2P	114.6°	109.5°
C3	C2	N1	120.2°	120.7°
C2	C3	C4	119.7°	119.0°
C2	N1	C6	121.9°	121.7°
C3	C4	C4A	119.4°	120.8°
C3	C4	C5	118.6°	118.4°
N1	C6	C5	119.8°	120.9°
N1	C6	H6	120.1°	119.5°
P	O4P	C5A	115.9°	123.0°
O4P	P	O1P	108.5°	109.4°
O4P	P	O2P	107.5°	109.5°
O4P	C5A	C5	108.0°	109.4°
O4P	C5A	H5A2	109.8°	109.5°
O4P	C5A	H5A1	109.8°	109.4°
C4A	C4	C5	122.1°	120.8°
C4	C4A	H4A	110.0°	109.5°
C4	C4A	H2	110.0°	109.5°
C4	C5	C6	119.7°	119.3°
C4	C5	C5A	122.6°	120.3°
C6	C5	C5A	117.7°	120.4°
C5	C6	H6	120.0°	119.6°
C5	C5A	H5A2	109.8°	109.5°
C5	C5A	H5A1	109.8°	109.5°
O1P	P	O2P	110.8°	109.5°
P	O1P	H5	109.5°	114.0°
P	O2P	H7	109.5°	114.0°
H1	N	H12	109.5°	109.4°
H2A3	C2A	H2A1	109.5°	109.5°
H2A3	C2A	H2A2	109.5°	109.5°
H2A1	C2A	H2A2	109.5°	109.4°
H4A	C4A	H2	109.5°	109.5°
H5A2	C5A	H5A1	109.5°	109.5°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O	C	ND	CA	175.5°	180.0°
O	C	ND	OG	178.9°	179.8°
O	C	CA	N	8.3°	0.0°
O	C	CA	CB	178.8°	179.7°
ND	C	CA	N	176.1°	180.0°
ND	C	CA	CB	5.6°	0.3°
C	ND	OG	CB	0.1°	0.0°
ND	C	O	H4	0.0°	90.0°
CA	C	ND	OG	3.5°	0.2°
C	CA	N	CB	167.5°	179.7°
C	CA	N	C4A	120.6°	85.3°
C	CA	CB	OG	5.2°	0.3°
C	CA	N	H1	118.4°	154.7°
CA	C	O	H4	175.1°	90.0°
C	CA	CB	HB1	174.8°	179.8°
C	CA	N	H12	0.3°	34.8°
ND	OG	CB	CA	3.8°	0.2°
ND	OG	CB	HB1	176.2°	179.8°
CA	N	C4A	H1	120.9°	120.0°
CA	N	C4A	H12	121.0°	120.1°
N	CA	CB	OG	174.9°	180.0°
CA	N	C4A	C4	175.9°	180.0°
CA	N	H1	H12	117.0°	120.0°
N	CA	CB	HB1	5.1°	0.0°
CA	N	C4A	H4A	56.2°	60.0°
CA	N	C4A	H2	64.4°	60.0°
CB	CA	N	C4A	46.9°	95.0°
CA	CB	OG	HB1	180.0°	179.9°
CB	CA	N	H1	74.0°	25.0°
CB	CA	N	H12	167.8°	144.9°
N	C4A	C4	C3	63.4°	90.0°
N	C4A	C4	H4A	119.7°	120.0°
N	C4A	C4	H2	119.7°	120.0°
N	C4A	C4	C5	116.3°	90.1°
C4A	N	H1	H12	117.0°	119.9°
N	C4A	H4A	H2	121.0°	120.0°
C2A	C2	C3	O1	1.1°	0.4°
C2A	C2	C3	N1	178.2°	180.0°
C2A	C2	C3	C4	179.4°	180.0°
C2A	C2	N1	C6	179.0°	179.9°
C2	C2A	H2A3	H2A1	120.0°	120.1°
C2	C2A	H2A3	H2A2	120.0°	120.0°
C2	C2A	H2A1	H2A2	120.0°	119.9°
O1	C3	C2	C4	179.5°	179.7°
O1	C3	C2	N1	179.3°	179.7°
O1	C3	C4	C4A	0.5°	0.4°
O1	C3	C4	C5	179.8°	179.7°
O3P	P	O4P	O1P	118.9°	120.0°
O3P	P	O4P	O2P	121.2°	120.0°
O3P	P	O4P	C5A	176.9°	55.0°
O3P	P	O1P	O2P	129.6°	120.0°
O3P	P	O1P	H5	0.0°	60.0°
O3P	P	O2P	H7	0.0°	180.0°
C3	C2	N1	C6	0.7°	0.0°
C2	C3	C4	C4A	179.1°	180.0°
C2	C3	C4	C5	0.6°	0.1°
C3	C2	C2A	H2A3	178.3°	89.9°
C3	C2	C2A	H2A1	61.7°	150.0°
C3	C2	C2A	H2A2	58.3°	30.1°
C2	C3	O1	H3	180.0°	90.3°
N1	C2	C3	C4	1.1°	0.0°
C2	N1	C6	C5	0.3°	0.0°
C2	N1	C6	H6	179.7°	180.0°
N1	C2	C2A	H2A3	0.0°	90.0°
N1	C2	C2A	H2A1	120.0°	30.1°
N1	C2	C2A	H2A2	120.0°	150.0°
C3	C4	C4A	C5	179.7°	179.9°
C3	C4	C5	C6	0.3°	0.1°
C3	C4	C5	C5A	180.0°	180.0°
C3	C4	C4A	H4A	56.3°	149.9°
C3	C4	C4A	H2	176.9°	29.9°
C4	C3	O1	H3	0.4°	90.1°
N1	C6	C5	C4	0.8°	0.0°
N1	C6	C5	H6	180.0°	180.0°
N1	C6	C5	C5A	179.5°	180.0°
P	O4P	C5A	C5	171.5°	180.0°
O4P	P	O1P	O2P	117.8°	120.0°
P	O4P	C5A	H5A2	51.8°	59.9°
P	O4P	C5A	H5A1	68.7°	60.1°
O4P	P	O1P	H5	112.6°	180.0°
O4P	P	O2P	H7	113.4°	60.0°
O4P	C5A	C5	C4	68.8°	179.9°
O4P	C5A	C5	C6	111.5°	0.0°
O4P	C5A	C5	H5A2	119.8°	120.0°
O4P	C5A	C5	H5A1	119.7°	119.9°
C5A	O4P	P	O1P	64.2°	175.0°
C5A	O4P	P	O2P	55.7°	65.1°
O4P	C5A	H5A2	H5A1	120.7°	120.0°
C4A	C4	C5	C6	180.0°	180.0°
C4A	C4	C5	C5A	0.3°	0.0°
C4	C4A	N	H1	63.2°	60.0°
C4	C4A	H4A	H2	120.9°	120.0°
C4	C4A	N	H12	54.9°	59.9°
C4	C5	C6	C5A	179.7°	180.0°
C4	C5	C6	H6	179.2°	180.0°
C5	C4	C4A	H4A	124.0°	30.0°
C5	C4	C4A	H2	3.4°	150.0°
C4	C5	C5A	H5A2	51.0°	60.0°
C4	C5	C5A	H5A1	171.5°	60.0°
C6	C5	C5A	H5A2	128.7°	120.0°
C6	C5	C5A	H5A1	8.2°	120.0°
C5A	C5	C6	H6	0.5°	0.0°
C5	C5A	H5A2	H5A1	120.7°	120.0°
O1P	P	O2P	H7	128.2°	60.0°
O2P	P	O1P	H5	129.6°	60.0°
H1	N	C4A	H4A	177.2°	60.0°
H1	N	C4A	H2	56.5°	180.0°
H2A3	C2A	H2A1	H2A2	120.0°	120.0°
H4A	C4A	N	H12	64.7°	180.0°
H2	C4A	N	H12	174.6°	60.0°

Release date:	2020-04-01
Definition date:	2020-03-16
Last modified:	2020-03-27
Release status:	REL
Processing site:	PDBE
Derived from:	6SCZ