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SummaryGeometryRelated PDB entries

OJ1

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
O04C03doub1.21Å1.19Å
C01C02sing1.53Å1.51Å
C03C02sing1.51Å1.53Å
C03N05sing1.35Å1.45Å
C06N05sing1.47Å1.41Å
C06C07sing1.53Å1.51Å
N05C10sing1.47Å1.42Å
C07N08sing1.47Å1.50Å
C10C09sing1.53Å1.53Å
CL25C24sing1.74Å1.78Å
F35C34sing1.35Å1.36Å
N08C09sing1.47Å1.49Å
N08C11sing1.39Å1.43Å
C26C24doub1.36Å1.39ÅAromatic
C26C27sing1.40Å1.43ÅAromatic
C24C23sing1.41Å1.40ÅAromatic
C34C33doub1.38Å1.39ÅAromatic
C34C28sing1.40Å1.40ÅAromatic
C11C27doub1.41Å1.43ÅAromatic
C11N12sing1.32Å1.32ÅAromatic
C33C32sing1.38Å1.39ÅAromatic
C27C21sing1.42Å1.37ÅAromatic
C23C28sing1.48Å1.39Å
C23C22doub1.39Å1.40ÅAromatic
N12N13doub1.28Å1.37ÅAromatic
C28C29doub1.40Å1.39ÅAromatic
C21C22sing1.40Å1.43ÅAromatic
C21C14doub1.42Å1.43ÅAromatic
C32C31doub1.38Å1.39ÅAromatic
N13C14sing1.32Å1.32ÅAromatic
C14C15sing1.48Å1.38Å
C29C31sing1.39Å1.39ÅAromatic
C29O30sing1.36Å1.40Å
C20C15doub1.39Å1.39ÅAromatic
C20C19sing1.38Å1.39ÅAromatic
C15C16sing1.39Å1.39ÅAromatic
C19C18doub1.38Å1.39ÅAromatic
C16C17doub1.38Å1.39ÅAromatic
C18C17sing1.38Å1.39ÅAromatic
C01H1sing1.09Å1.10Å
C01H2sing1.09Å1.10Å
C01H3sing1.09Å1.10Å
C02H4sing1.09Å1.10Å
C02H5sing1.09Å1.10Å
C06H6sing1.09Å1.10Å
C06H7sing1.09Å1.10Å
C07H8sing1.09Å1.10Å
C07H9sing1.09Å1.10Å
C09H10sing1.09Å1.10Å
C09H11sing1.09Å1.10Å
C10H12sing1.09Å1.10Å
C10H13sing1.09Å1.10Å
C16H14sing1.08Å1.08Å
C17H15sing1.08Å1.08Å
C18H16sing1.08Å1.08Å
C19H17sing1.08Å1.08Å
C20H18sing1.08Å1.08Å
C22H19sing1.08Å1.08Å
C26H20sing1.08Å1.08Å
O30H21sing0.97Å0.95Å
C31H22sing1.08Å1.08Å
C32H23sing1.08Å1.08Å
C33H24sing1.08Å1.08Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
O04C03C02120.9°120.0°
O04C03N05119.9°120.0°
C01C02C03113.1°109.4°
C02C01H1109.5°109.5°
C02C01H2109.4°109.5°
C02C01H3109.5°109.4°
C01C02H4108.6°109.5°
C01C02H5108.6°109.5°
C02C03N05119.2°120.0°
C03C02H4108.5°109.4°
C03C02H5108.6°109.4°
C03N05C06120.4°120.9°
C03N05C10124.4°120.9°
N05C06C07109.2°108.5°
C06N05C10115.2°118.2°
N05C06H6109.5°109.7°
N05C06H7109.5°109.7°
C06C07N08108.7°109.3°
C07C06H6109.6°109.6°
C07C06H7109.5°109.6°
C06C07H8109.6°109.5°
C06C07H9109.7°109.5°
N05C10C09114.4°108.8°
N05C10H12108.2°109.7°
N05C10H13108.2°109.6°
C07N08C09105.1°111.3°
C07N08C11111.7°111.0°
N08C07H8109.7°109.5°
N08C07H9109.7°109.5°
C10C09N08108.9°109.4°
C10C09H10109.6°109.5°
C10C09H11109.7°109.3°
C09C10H12108.2°109.6°
C09C10H13108.2°109.4°
CL25C24C26119.9°119.6°
CL25C24C23120.0°119.6°
F35C34C33119.5°120.1°
F35C34C28119.9°120.0°
C09N08C11122.5°111.0°
N08C09H10109.6°109.5°
N08C09H11109.6°109.5°
N08C11C27119.3°120.5°
N08C11N12119.8°120.5°
C24C26C27120.3°119.7°
C26C24C23120.1°120.8°
C24C26H20119.8°120.1°
C26C27C11121.3°122.4°
C26C27C21120.0°119.9°
C27C26H20119.9°120.2°
C24C23C28121.8°119.7°
C24C23C22119.2°120.6°
C33C34C28120.6°119.9°
C34C33C32119.9°120.2°
C34C33H24120.1°119.9°
C34C28C23119.6°120.2°
C34C28C29119.2°119.7°
C27C11N12120.7°119.0°
C11C27C21118.8°117.7°
C11N12N13121.0°123.4°
C33C32C31119.8°120.4°
C33C32H23120.1°119.8°
C32C33H24120.0°119.9°
C27C21C22119.3°119.7°
C27C21C14117.7°117.7°
C28C23C22119.0°119.8°
C23C28C29121.2°120.1°
C23C22C21121.1°119.3°
C23C22H19119.5°120.4°
N12N13C14120.4°123.3°
C28C29C31120.2°119.8°
C28C29O30119.9°120.2°
C22C21C14123.0°122.6°
C21C22H19119.4°120.3°
C21C14N13121.3°118.9°
C21C14C15121.4°120.5°
C32C31C29120.3°120.1°
C32C31H22119.9°120.0°
C31C32H23120.1°119.8°
N13C14C15117.2°120.5°
C14C15C20119.1°120.1°
C14C15C16120.3°120.1°
C31C29O30119.9°120.1°
C29C31H22119.8°119.9°
C29O30H21109.5°114.0°
C15C20C19119.8°119.9°
C20C15C16120.6°119.7°
C15C20H18120.1°120.1°
C20C19C18119.9°120.1°
C20C19H17120.0°120.0°
C19C20H18120.1°120.0°
C15C16C17119.4°119.9°
C15C16H14120.3°120.1°
C19C18C17120.3°120.3°
C19C18H16119.9°119.8°
C18C19H17120.1°119.9°
C16C17C18120.1°120.1°
C17C16H14120.3°120.0°
C16C17H15120.0°119.9°
C18C17H15120.0°120.0°
C17C18H16119.9°119.9°
H1C01H2109.5°109.5°
H1C01H3109.5°109.5°
H2C01H3109.5°109.5°
H4C02H5109.5°109.5°
H6C06H7109.5°109.8°
H8C07H9109.5°109.5°
H10C09H11109.5°109.5°
H12C10H13109.5°109.7°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
O04C03C02C0161.3°0.0°
O04C03C02N05179.8°180.0°
O04C03N05C060.7°179.7°
O04C03N05C10179.9°0.0°
O04C03C02H4178.2°120.0°
O04C03C02H559.3°120.0°
C01C02C03H4120.5°120.0°
C01C02C03H5120.6°120.0°
C01C02C03N05118.9°180.0°
C02C01H1H2120.0°120.1°
C02C01H1H3120.0°119.9°
C02C01H2H3120.0°119.9°
C01C02H4H5118.4°120.0°
C02C03N05C06179.2°0.3°
C02C03N05C100.0°180.0°
C03C02C01H1180.0°60.0°
C03C02C01H260.0°180.0°
C03C02C01H360.0°60.0°
C03C02H4H5118.3°120.0°
C03N05C06C10179.3°179.7°
C03N05C06C07128.8°128.8°
C03N05C10C09133.7°128.9°
N05C03C02H41.7°60.0°
N05C03C02H5120.6°60.0°
C03N05C06H6111.2°111.5°
C03N05C06H78.8°9.1°
C03N05C10H1213.0°9.0°
C03N05C10H13105.5°111.5°
N05C06C07H6120.0°119.7°
N05C06C07H7119.9°119.7°
N05C06C07N0863.4°53.8°
C06N05C10C0947.0°50.8°
N05C06H6H7120.1°120.5°
N05C06C07H8176.7°173.8°
N05C06C07H956.5°66.2°
C06N05C10H12167.8°170.6°
C06N05C10H1373.7°68.8°
C07C06N05C1052.0°50.9°
C06C07N08H8119.9°119.9°
C06C07N08H9119.9°120.0°
C06C07N08C0968.0°63.1°
C06C07N08C11156.9°172.7°
C07C06H6H7120.1°120.4°
C06C07H8H9120.3°120.1°
N05C10C09H12120.7°119.9°
N05C10C09H13120.7°119.7°
N05C10C09N0850.9°53.5°
C10N05C06H668.0°68.8°
C10N05C06H7171.9°170.6°
N05C10C09H1069.0°173.6°
N05C10C09H11170.8°66.4°
N05C10H12H13117.7°120.5°
C07N08C09C1060.1°63.0°
C07N08C09C11128.9°124.1°
C07N08C11C2778.6°124.9°
C07N08C11N1297.5°55.4°
N08C07C06H656.6°65.9°
N08C07C06H7176.6°173.6°
N08C07H8H9120.4°120.1°
C07N08C09H1059.8°176.9°
C07N08C09H11179.9°56.8°
C10C09N08H10119.9°120.1°
C10C09N08H11119.9°119.8°
C10C09N08C11171.0°172.9°
C10C09H10H11120.3°119.9°
C09C10H12H13117.8°120.2°
CL25C24C26C23179.7°179.9°
CL25C24C26C27180.0°179.7°
CL25C24C23C280.8°0.1°
CL25C24C23C22179.9°180.0°
CL25C24C26H200.0°0.1°
F35C34C33C28179.5°179.5°
F35C34C33C32180.0°180.0°
F35C34C28C231.3°0.2°
F35C34C28C29179.9°180.0°
F35C34C33H240.1°0.3°
C09N08C11C27155.5°110.8°
C09N08C11N1228.5°68.9°
C09N08C07H8172.1°176.9°
C09N08C07H951.9°56.8°
N08C09H10H11120.3°120.1°
N08C09C10H12171.6°173.4°
N08C09C10H1369.8°66.2°
N08C11C27C263.3°0.6°
N08C11C27N12176.1°179.7°
N08C11C27C21177.6°179.7°
N08C11N12N13177.6°180.0°
C11N08C07H837.1°52.8°
C11N08C07H983.2°67.3°
C11N08C09H1069.1°52.8°
C11N08C09H1151.1°67.3°
C24C26C27H20180.0°179.8°
C24C26C27C11179.2°179.7°
C24C26C27C210.1°0.6°
C26C24C23C28179.5°180.0°
C26C24C23C220.5°0.1°
C27C26C24C230.3°0.3°
C26C27C11C21179.1°179.1°
C26C27C11N12179.3°179.7°
C26C27C21C220.1°0.6°
C26C27C21C14179.9°179.7°
C24C23C28C3472.6°89.7°
C24C23C28C22179.0°179.9°
C24C23C28C29108.9°90.1°
C24C23C22C210.5°0.1°
C24C23C22H19179.5°180.0°
C23C24C26H20179.7°180.0°
C34C33C32H24180.0°179.7°
C33C34C28C23179.2°179.7°
C33C34C28C290.6°0.5°
C34C33C32C310.4°0.3°
C34C33C32H23179.6°179.8°
C28C34C33C320.5°0.6°
C34C28C23C29178.6°179.8°
C34C28C23C22106.5°90.2°
C34C28C29C310.6°0.2°
C34C28C29O30179.7°179.7°
C28C34C33H24179.5°179.8°
C27C11N12N131.6°0.3°
C11C27C21C22179.2°179.7°
C11C27C21C140.8°0.5°
C11C27C26H200.8°0.5°
N12C11C27C211.6°0.6°
C11N12N13C140.8°0.0°
C33C32C31H23180.0°179.9°
C33C32C31C290.4°0.0°
C33C32C31H22179.6°180.0°
C27C21C22C230.3°0.2°
C27C21C22C14180.0°179.8°
C27C21C14N130.0°0.2°
C27C21C14C15179.6°179.7°
C27C21C22H19179.7°179.7°
C21C27C26H20179.9°179.7°
C28C23C22C21179.5°180.0°
C23C28C29C31179.2°180.0°
C23C28C29O301.1°0.0°
C28C23C22H190.5°0.1°
C22C23C28C2972.1°90.0°
C23C22C21H19180.0°179.9°
C23C22C21C14179.7°180.0°
N12N13C14C210.0°0.0°
N12N13C14C15179.6°179.9°
C28C29C31C320.5°0.1°
C28C29C31O30179.7°179.9°
C28C29O30H21180.0°89.9°
C28C29C31H22179.5°180.0°
C22C21C14N13180.0°180.0°
C22C21C14C150.4°0.1°
C21C14N13C15179.6°179.9°
C21C14C15C2075.3°135.9°
C21C14C15C16105.8°44.3°
C14C21C22H190.3°0.0°
C32C31C29H22180.0°180.0°
C32C31C29O30179.8°180.0°
C31C32C33H24179.6°180.0°
N13C14C15C20104.4°44.0°
N13C14C15C1674.6°135.8°
C14C15C20C16179.0°179.8°
C14C15C20C19179.8°179.7°
C14C15C16C17179.7°180.0°
C14C15C16H140.3°0.0°
C14C15C20H180.2°0.0°
C31C29O30H210.3°90.0°
C29C31C32H23179.6°179.9°
O30C29C31H220.2°0.0°
C15C20C19H18180.0°179.8°
C15C20C19C180.7°0.5°
C20C15C16C170.7°0.2°
C20C15C16H14179.3°179.8°
C15C20C19H17179.2°179.7°
C19C20C15C160.8°0.5°
C20C19C18H17180.0°179.7°
C20C19C18C170.6°0.3°
C20C19C18H16179.4°179.7°
C15C16C17H14180.0°180.0°
C15C16C17C180.5°0.1°
C15C16C17H15179.5°180.0°
C16C15C20H18179.2°179.8°
C19C18C17C160.4°0.0°
C19C18C17H16180.0°180.0°
C19C18C17H15179.5°179.9°
C18C19C20H18179.2°179.7°
C16C17C18H15180.0°179.9°
C16C17C18H16179.5°180.0°
C18C17C16H14179.5°179.9°
C17C18C19H17179.4°180.0°
H1C01H2H3120.0°120.0°
H1C01C02H459.5°179.9°
H1C01C02H559.4°60.0°
H2C01C02H460.5°60.0°
H2C01C02H5179.4°60.1°
H3C01C02H4179.5°60.0°
H3C01C02H560.6°179.9°
H6C06C07H863.3°54.0°
H6C06C07H9176.5°174.1°
H7C06C07H856.8°66.5°
H7C06C07H963.5°53.6°
H10C09C10H1251.7°66.5°
H10C09C10H13170.2°53.9°
H11C09C10H1268.5°53.5°
H11C09C10H1350.1°173.9°
H14C16C17H150.5°0.0°
H15C17C18H160.5°0.0°
H16C18C19H170.6°0.0°
H17C19C20H180.8°0.0°
H22C31C32H230.4°0.0°
H23C32C33H240.4°0.1°

222624

PDB entries from 2024-07-17

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