OIQ
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| C7' | N3' | sing | 1.46Å | 1.45Å | |
| N3' | CD | doub | 1.30Å | 1.27Å | |
| C8' | N4' | sing | 1.47Å | 1.45Å | |
| N4' | CD | sing | 1.37Å | 1.33Å | |
| CD | N2' | sing | 1.37Å | 1.34Å | |
| C6' | N2' | sing | 1.48Å | 1.46Å | |
| C6' | C4' | sing | 1.56Å | 1.52Å | |
| N2' | C2' | sing | 1.49Å | 1.48Å | |
| C1' | O4' | sing | 1.44Å | 1.42Å | |
| C1' | C2' | sing | 1.56Å | 1.52Å | |
| C1' | N1 | sing | 1.47Å | 1.47Å | |
| O4' | C4' | sing | 1.46Å | 1.42Å | |
| C2' | C3' | sing | 1.57Å | 1.49Å | |
| O2 | C2 | doub | 1.22Å | 1.25Å | |
| C4' | C5' | sing | 1.53Å | 1.52Å | |
| C4' | C3' | sing | 1.57Å | 1.52Å | |
| C5' | O5' | sing | 1.43Å | 1.42Å | |
| C3' | O3' | sing | 1.43Å | 1.42Å | |
| C2 | N1 | sing | 1.35Å | 1.40Å | |
| C2 | N3 | sing | 1.35Å | 1.34Å | |
| N1 | C6 | sing | 1.37Å | 1.35Å | |
| N3 | C4 | sing | 1.35Å | 1.34Å | |
| O5' | P | sing | 1.61Å | 1.60Å | |
| C6 | C5 | doub | 1.35Å | 1.38Å | |
| OP1 | P | doub | 1.48Å | 1.50Å | |
| C4 | C5 | sing | 1.42Å | 1.48Å | |
| C4 | O4 | doub | 1.22Å | 1.25Å | |
| P | OP2 | sing | 1.61Å | 1.50Å | |
| C5 | C5M | sing | 1.51Å | 1.51Å | |
| P | OP3 | sing | 1.61Å | 1.60Å | |
| C6 | H1 | sing | 1.08Å | 1.08Å | |
| C1' | H2 | sing | 1.09Å | 1.10Å | |
| C2' | H3 | sing | 1.09Å | 1.10Å | |
| C3' | H4 | sing | 1.09Å | 1.10Å | |
| C5' | H5 | sing | 1.09Å | 1.10Å | |
| C5' | H6 | sing | 1.09Å | 1.10Å | |
| C5M | H7 | sing | 1.09Å | 1.10Å | |
| C5M | H8 | sing | 1.09Å | 1.10Å | |
| C5M | H9 | sing | 1.09Å | 1.10Å | |
| C6' | H10 | sing | 1.09Å | 1.10Å | |
| C6' | H11 | sing | 1.09Å | 1.10Å | |
| C7' | H12 | sing | 1.09Å | 1.10Å | |
| C7' | H13 | sing | 1.09Å | 1.10Å | |
| C7' | H14 | sing | 1.09Å | 1.10Å | |
| C8' | H15 | sing | 1.09Å | 1.10Å | |
| C8' | H16 | sing | 1.09Å | 1.10Å | |
| C8' | H17 | sing | 1.09Å | 1.10Å | |
| N3 | H18 | sing | 0.97Å | 1.00Å | |
| N4' | H19 | sing | 0.97Å | 1.00Å | |
| O3' | H20 | sing | 0.97Å | 0.95Å | |
| OP2 | H21 | sing | 0.97Å | 0.95Å | |
| OP3 | H22 | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| C7' | N3' | CD | 127.2° | 120.0° |
| N3' | C7' | H12 | 109.5° | 109.5° |
| N3' | C7' | H13 | 109.5° | 109.5° |
| N3' | C7' | H14 | 109.4° | 109.5° |
| N3' | CD | N4' | 118.0° | 120.0° |
| N3' | CD | N2' | 118.5° | 120.0° |
| C8' | N4' | CD | 126.2° | 120.0° |
| N4' | C8' | H15 | 109.5° | 109.4° |
| N4' | C8' | H16 | 109.4° | 109.5° |
| N4' | C8' | H17 | 109.4° | 109.5° |
| C8' | N4' | H19 | 116.9° | 120.0° |
| N4' | CD | N2' | 123.5° | 120.0° |
| CD | N4' | H19 | 116.9° | 120.0° |
| CD | N2' | C6' | 125.9° | 127.1° |
| CD | N2' | C2' | 124.7° | 127.1° |
| N2' | C6' | C4' | 98.4° | 105.0° |
| C6' | N2' | C2' | 108.9° | 105.8° |
| N2' | C6' | H10 | 112.2° | 110.3° |
| N2' | C6' | H11 | 112.2° | 110.4° |
| C6' | C4' | O4' | 105.5° | 104.1° |
| C6' | C4' | C5' | 117.3° | 116.2° |
| C6' | C4' | C3' | 104.5° | 99.7° |
| C4' | C6' | H10 | 112.2° | 110.3° |
| C4' | C6' | H11 | 112.1° | 110.3° |
| N2' | C2' | C1' | 108.4° | 103.8° |
| N2' | C2' | C3' | 97.9° | 100.9° |
| N2' | C2' | H3 | 116.5° | 117.0° |
| O4' | C1' | C2' | 103.8° | 105.4° |
| O4' | C1' | N1 | 107.3° | 110.2° |
| C1' | O4' | C4' | 105.6° | 107.3° |
| O4' | C1' | H2 | 111.0° | 110.3° |
| C2' | C1' | N1 | 114.7° | 110.3° |
| C1' | C2' | C3' | 99.7° | 99.0° |
| C2' | C1' | H2 | 109.6° | 110.3° |
| C1' | C2' | H3 | 115.6° | 116.6° |
| C1' | N1 | C2 | 118.5° | 119.7° |
| C1' | N1 | C6 | 121.1° | 119.7° |
| N1 | C1' | H2 | 110.2° | 110.3° |
| O4' | C4' | C5' | 110.8° | 116.7° |
| O4' | C4' | C3' | 102.8° | 101.3° |
| C2' | C3' | C4' | 92.3° | 93.7° |
| C2' | C3' | O3' | 109.9° | 112.5° |
| C3' | C2' | H3 | 116.2° | 116.8° |
| C2' | C3' | H4 | 112.7° | 112.4° |
| O2 | C2 | N1 | 119.3° | 119.6° |
| O2 | C2 | N3 | 121.3° | 119.5° |
| C5' | C4' | C3' | 114.6° | 116.4° |
| C4' | C5' | O5' | 104.3° | 109.5° |
| C4' | C5' | H5 | 110.7° | 109.5° |
| C4' | C5' | H6 | 110.7° | 109.5° |
| C4' | C3' | O3' | 114.0° | 112.5° |
| C4' | C3' | H4 | 112.2° | 112.6° |
| C5' | O5' | P | 122.3° | 123.0° |
| O5' | C5' | H5 | 110.8° | 109.5° |
| O5' | C5' | H6 | 110.7° | 109.5° |
| O3' | C3' | H4 | 113.8° | 112.0° |
| C3' | O3' | H20 | 109.5° | 114.0° |
| N1 | C2 | N3 | 119.4° | 121.0° |
| C2 | N1 | C6 | 120.3° | 120.6° |
| C2 | N3 | C4 | 123.3° | 120.2° |
| C2 | N3 | H18 | 118.4° | 119.9° |
| N1 | C6 | C5 | 121.7° | 119.7° |
| N1 | C6 | H1 | 119.2° | 120.1° |
| N3 | C4 | C5 | 118.5° | 119.4° |
| N3 | C4 | O4 | 120.5° | 120.3° |
| C4 | N3 | H18 | 118.3° | 119.9° |
| O5' | P | OP1 | 110.8° | 109.5° |
| O5' | P | OP2 | 108.6° | 109.5° |
| O5' | P | OP3 | 104.1° | 109.5° |
| C6 | C5 | C4 | 116.8° | 119.1° |
| C6 | C5 | C5M | 121.8° | 120.4° |
| C5 | C6 | H1 | 119.1° | 120.2° |
| OP1 | P | OP2 | 115.8° | 109.4° |
| OP1 | P | OP3 | 108.3° | 109.5° |
| C5 | C4 | O4 | 121.0° | 120.3° |
| C4 | C5 | C5M | 121.5° | 120.4° |
| OP2 | P | OP3 | 108.5° | 109.5° |
| P | OP2 | H21 | 109.5° | 114.0° |
| C5 | C5M | H7 | 109.5° | 109.5° |
| C5 | C5M | H8 | 109.5° | 109.5° |
| C5 | C5M | H9 | 109.4° | 109.5° |
| P | OP3 | H22 | 109.5° | 114.0° |
| H5 | C5' | H6 | 109.5° | 109.4° |
| H7 | C5M | H8 | 109.5° | 109.5° |
| H7 | C5M | H9 | 109.4° | 109.4° |
| H8 | C5M | H9 | 109.5° | 109.4° |
| H10 | C6' | H11 | 109.5° | 110.4° |
| H12 | C7' | H13 | 109.5° | 109.5° |
| H12 | C7' | H14 | 109.5° | 109.5° |
| H13 | C7' | H14 | 109.5° | 109.4° |
| H15 | C8' | H16 | 109.5° | 109.5° |
| H15 | C8' | H17 | 109.5° | 109.5° |
| H16 | C8' | H17 | 109.5° | 109.5° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| C7' | N3' | CD | N4' | 1.5° | 5.0° |
| C7' | N3' | CD | N2' | 179.4° | 175.0° |
| N3' | C7' | H12 | H13 | 120.0° | 120.0° |
| N3' | C7' | H12 | H14 | 120.0° | 120.0° |
| N3' | C7' | H13 | H14 | 120.0° | 120.0° |
| N3' | CD | N4' | C8' | 143.5° | 174.6° |
| N3' | CD | N4' | N2' | 177.9° | 180.0° |
| N3' | CD | N2' | C6' | 29.4° | 174.1° |
| N3' | CD | N2' | C2' | 142.0° | 6.1° |
| CD | N3' | C7' | H12 | 180.0° | 55.2° |
| CD | N3' | C7' | H13 | 60.0° | 64.9° |
| CD | N3' | C7' | H14 | 60.0° | 175.1° |
| N3' | CD | N4' | H19 | 36.5° | 5.3° |
| C8' | N4' | CD | H19 | 180.0° | 179.9° |
| C8' | N4' | CD | N2' | 38.6° | 5.4° |
| N4' | C8' | H15 | H16 | 120.0° | 120.0° |
| N4' | C8' | H15 | H17 | 120.0° | 120.0° |
| N4' | C8' | H16 | H17 | 120.0° | 120.0° |
| N4' | CD | N2' | C6' | 152.7° | 5.9° |
| N4' | CD | N2' | C2' | 35.9° | 174.0° |
| CD | N4' | C8' | H15 | 180.0° | 63.4° |
| CD | N4' | C8' | H16 | 60.0° | 176.6° |
| CD | N4' | C8' | H17 | 60.0° | 56.6° |
| CD | N2' | C6' | C2' | 172.5° | 179.9° |
| CD | N2' | C6' | C4' | 164.4° | 177.5° |
| CD | N2' | C2' | C1' | 127.6° | 114.9° |
| CD | N2' | C2' | C3' | 129.4° | 142.9° |
| CD | N2' | C2' | H3 | 4.8° | 15.0° |
| CD | N2' | C6' | H10 | 77.4° | 58.6° |
| CD | N2' | C6' | H11 | 46.3° | 63.6° |
| N2' | CD | N4' | H19 | 141.4° | 174.7° |
| N2' | C6' | C4' | H10 | 118.2° | 118.9° |
| N2' | C6' | C4' | H11 | 118.2° | 118.9° |
| C6' | N2' | C2' | C1' | 59.8° | 64.9° |
| N2' | C6' | C4' | O4' | 78.3° | 71.5° |
| C6' | N2' | C2' | C3' | 43.3° | 37.2° |
| N2' | C6' | C4' | C5' | 157.7° | 158.7° |
| N2' | C6' | C4' | C3' | 29.6° | 32.8° |
| C6' | N2' | C2' | H3 | 167.9° | 165.1° |
| N2' | C6' | H10 | H11 | 125.1° | 122.3° |
| C4' | C6' | N2' | C2' | 8.1° | 2.6° |
| C6' | C4' | O4' | C1' | 75.2° | 66.3° |
| C6' | C4' | O4' | C5' | 127.9° | 129.5° |
| C6' | C4' | O4' | C3' | 109.2° | 103.1° |
| C6' | C4' | C3' | C2' | 54.9° | 52.4° |
| C6' | C4' | C5' | C3' | 123.0° | 116.9° |
| C6' | C4' | C5' | O5' | 173.5° | 58.1° |
| C6' | C4' | C3' | O3' | 58.1° | 63.7° |
| C6' | C4' | C3' | H4 | 170.6° | 168.6° |
| C6' | C4' | C5' | H5 | 67.3° | 61.9° |
| C6' | C4' | C5' | H6 | 54.4° | 178.1° |
| C4' | C6' | H10 | H11 | 125.2° | 122.1° |
| N2' | C2' | C1' | O4' | 64.6° | 71.5° |
| N2' | C2' | C1' | C3' | 101.8° | 103.7° |
| N2' | C2' | C1' | H3 | 132.8° | 130.3° |
| N2' | C2' | C1' | N1 | 178.6° | 169.5° |
| N2' | C2' | C3' | H3 | 124.8° | 128.0° |
| N2' | C2' | C3' | C4' | 56.5° | 55.4° |
| N2' | C2' | C3' | O3' | 60.1° | 60.8° |
| N2' | C2' | C1' | H2 | 54.1° | 47.5° |
| N2' | C2' | C3' | H4 | 171.8° | 171.6° |
| C2' | N2' | C6' | H10 | 110.1° | 121.5° |
| C2' | N2' | C6' | H11 | 126.3° | 116.3° |
| O4' | C1' | C2' | N1 | 116.8° | 119.0° |
| O4' | C1' | C2' | H2 | 118.6° | 119.0° |
| O4' | C1' | N1 | H2 | 121.0° | 122.0° |
| O4' | C1' | C2' | C3' | 37.2° | 32.2° |
| C1' | O4' | C4' | C5' | 156.9° | 164.2° |
| C1' | O4' | C4' | C3' | 34.0° | 36.8° |
| O4' | C1' | N1 | C2 | 159.3° | 163.9° |
| O4' | C1' | N1 | C6 | 17.7° | 16.4° |
| O4' | C1' | C2' | H3 | 162.6° | 158.2° |
| C2' | C1' | N1 | H2 | 124.2° | 122.0° |
| C2' | C1' | O4' | C4' | 1.7° | 2.7° |
| C1' | C2' | C3' | H3 | 125.0° | 125.9° |
| C1' | C2' | C3' | C4' | 53.8° | 50.7° |
| C1' | C2' | C3' | O3' | 170.4° | 166.8° |
| C2' | C1' | N1 | C2 | 85.9° | 80.1° |
| C2' | C1' | N1 | C6 | 97.1° | 99.6° |
| C1' | C2' | C3' | H4 | 61.5° | 65.6° |
| N1 | C1' | O4' | C4' | 120.1° | 121.7° |
| N1 | C1' | C2' | C3' | 79.6° | 86.8° |
| C1' | N1 | C2 | O2 | 3.5° | 0.3° |
| C1' | N1 | C2 | C6 | 177.1° | 179.6° |
| C1' | N1 | C2 | N3 | 176.8° | 179.7° |
| C1' | N1 | C6 | C5 | 177.9° | 179.7° |
| C1' | N1 | C6 | H1 | 2.1° | 0.4° |
| N1 | C1' | C2' | H3 | 45.8° | 39.2° |
| O4' | C4' | C3' | C2' | 55.0° | 54.2° |
| O4' | C4' | C5' | C3' | 115.8° | 119.6° |
| O4' | C4' | C5' | O5' | 65.3° | 65.4° |
| O4' | C4' | C3' | O3' | 168.0° | 170.4° |
| C4' | O4' | C1' | H2 | 119.4° | 116.3° |
| O4' | C4' | C3' | H4 | 60.7° | 61.9° |
| O4' | C4' | C5' | H5 | 53.9° | 174.6° |
| O4' | C4' | C5' | H6 | 175.6° | 54.7° |
| O4' | C4' | C6' | H10 | 39.8° | 169.6° |
| O4' | C4' | C6' | H11 | 163.5° | 47.4° |
| C2' | C3' | C4' | C5' | 175.3° | 178.1° |
| C2' | C3' | C4' | O3' | 113.0° | 116.2° |
| C2' | C3' | C4' | H4 | 115.7° | 116.1° |
| C2' | C3' | O3' | H4 | 127.5° | 127.8° |
| C3' | C2' | C1' | H2 | 155.9° | 151.2° |
| C2' | C3' | O3' | H20 | 180.0° | 61.4° |
| O2 | C2 | N1 | N3 | 179.7° | 180.0° |
| O2 | C2 | N1 | C6 | 179.4° | 180.0° |
| O2 | C2 | N3 | C4 | 178.1° | 180.0° |
| O2 | C2 | N3 | H18 | 1.9° | 0.0° |
| C4' | C5' | O5' | H5 | 119.2° | 120.0° |
| C4' | C5' | O5' | H6 | 119.2° | 120.1° |
| C5' | C4' | C3' | O3' | 71.6° | 62.0° |
| C4' | C5' | O5' | P | 172.9° | 180.0° |
| C5' | C4' | C3' | H4 | 59.6° | 65.7° |
| C4' | C5' | H5 | H6 | 122.4° | 120.0° |
| C5' | C4' | C6' | H10 | 84.1° | 39.8° |
| C5' | C4' | C6' | H11 | 39.6° | 82.4° |
| C3' | C4' | C5' | O5' | 50.5° | 175.0° |
| C4' | C3' | O3' | H4 | 130.5° | 128.0° |
| C4' | C3' | C2' | H3 | 178.8° | 176.6° |
| C3' | C4' | C5' | H5 | 169.7° | 55.0° |
| C3' | C4' | C5' | H6 | 68.7° | 65.0° |
| C3' | C4' | C6' | H10 | 147.8° | 86.1° |
| C3' | C4' | C6' | H11 | 88.5° | 151.7° |
| C4' | C3' | O3' | H20 | 77.9° | 165.7° |
| C5' | O5' | P | OP1 | 35.9° | 55.0° |
| C5' | O5' | P | OP2 | 164.2° | 175.0° |
| C5' | O5' | P | OP3 | 80.4° | 65.0° |
| O5' | C5' | H5 | H6 | 122.4° | 120.0° |
| O3' | C3' | C2' | H3 | 64.6° | 67.2° |
| N1 | C2 | N3 | C4 | 1.6° | 0.0° |
| C2 | N1 | C6 | C5 | 0.9° | 0.1° |
| C2 | N1 | C6 | H1 | 179.1° | 180.0° |
| C2 | N1 | C1' | H2 | 38.3° | 41.9° |
| N1 | C2 | N3 | H18 | 178.4° | 180.0° |
| N3 | C2 | N1 | C6 | 0.2° | 0.1° |
| C2 | N3 | C4 | H18 | 180.0° | 180.0° |
| C2 | N3 | C4 | C5 | 1.7° | 0.0° |
| C2 | N3 | C4 | O4 | 179.5° | 180.0° |
| N1 | C6 | C5 | H1 | 180.0° | 179.9° |
| N1 | C6 | C5 | C4 | 0.7° | 0.1° |
| N1 | C6 | C5 | C5M | 179.4° | 180.0° |
| C6 | N1 | C1' | H2 | 138.7° | 138.4° |
| N3 | C4 | C5 | C6 | 0.5° | 0.1° |
| N3 | C4 | C5 | O4 | 178.8° | 179.9° |
| N3 | C4 | C5 | C5M | 179.4° | 180.0° |
| O5' | P | OP1 | OP2 | 124.3° | 120.0° |
| O5' | P | OP1 | OP3 | 113.6° | 120.0° |
| O5' | P | OP2 | OP3 | 112.5° | 120.0° |
| P | O5' | C5' | H5 | 68.0° | 60.0° |
| P | O5' | C5' | H6 | 53.7° | 59.9° |
| O5' | P | OP2 | H21 | 125.4° | 180.0° |
| O5' | P | OP3 | H22 | 118.0° | 60.0° |
| C6 | C5 | C4 | C5M | 179.9° | 179.9° |
| C6 | C5 | C4 | O4 | 179.3° | 180.0° |
| C6 | C5 | C5M | H7 | 180.0° | 179.9° |
| C6 | C5 | C5M | H8 | 60.0° | 60.0° |
| C6 | C5 | C5M | H9 | 60.0° | 59.9° |
| OP1 | P | OP2 | OP3 | 122.0° | 120.0° |
| OP1 | P | OP2 | H21 | 0.0° | 60.0° |
| OP1 | P | OP3 | H22 | 0.0° | 180.0° |
| C4 | C5 | C6 | H1 | 179.3° | 180.0° |
| C4 | C5 | C5M | H7 | 0.1° | 0.0° |
| C4 | C5 | C5M | H8 | 119.9° | 120.0° |
| C4 | C5 | C5M | H9 | 120.1° | 120.0° |
| C5 | C4 | N3 | H18 | 178.3° | 180.0° |
| O4 | C4 | C5 | C5M | 0.5° | 0.1° |
| O4 | C4 | N3 | H18 | 0.5° | 0.1° |
| OP2 | P | OP3 | H22 | 126.5° | 60.0° |
| C5M | C5 | C6 | H1 | 0.6° | 0.1° |
| C5 | C5M | H7 | H8 | 120.0° | 120.0° |
| C5 | C5M | H7 | H9 | 120.0° | 120.0° |
| C5 | C5M | H8 | H9 | 120.0° | 120.0° |
| OP3 | P | OP2 | H21 | 122.0° | 60.0° |
| H2 | C1' | C2' | H3 | 78.8° | 82.8° |
| H3 | C2' | C3' | H4 | 63.5° | 60.3° |
| H4 | C3' | O3' | H20 | 52.6° | 66.4° |
| H7 | C5M | H8 | H9 | 120.0° | 119.9° |
| H12 | C7' | H13 | H14 | 120.0° | 120.0° |
| H15 | C8' | H16 | H17 | 120.0° | 120.0° |
| H15 | C8' | N4' | H19 | 0.0° | 116.7° |
| H16 | C8' | N4' | H19 | 120.0° | 3.3° |
| H17 | C8' | N4' | H19 | 120.0° | 123.3° |
