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SummaryGeometryRelated PDB entries

Obsolete: OIP

OIP was replaced with DI on
Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
POP1doub1.48Å1.47Å
POP2sing1.61Å1.47Å
POP3sing1.61Å1.48Å
PO5'sing1.61Å1.61Å
OP2HOP2sing0.97Å0.95Å
OP3HOP3sing0.97Å0.95Å
O5'C5'sing1.43Å1.44Å
C5'C4'sing1.53Å1.52Å
C5'H5'sing1.09Å1.11Å
C5'H5''sing1.09Å1.11Å
C4'O4'sing1.45Å1.43Å
C4'C3'sing1.54Å1.52Å
C4'H4'sing1.09Å1.11Å
O4'C1'sing1.44Å1.42Å
C3'O3'sing1.43Å1.43Å
C3'C2'sing1.54Å1.51Å
C3'H3'sing1.09Å1.12Å
O3'HO3'sing0.97Å0.95Å
C2'C1'sing1.54Å1.50Å
C2'H2'sing1.09Å1.12Å
C2'H2''sing1.09Å1.12Å
C1'N9sing1.46Å1.46Å
C1'H1'sing1.09Å1.12Å
N9C8sing1.36Å1.33ÅAromatic
N9C4sing1.37Å1.33ÅAromatic
C8N7doub1.30Å1.33ÅAromatic
C8H8sing1.08Å1.10Å
N7C5sing1.35Å1.33ÅAromatic
C5C6sing1.42Å1.52Å
C5C4doub1.40Å1.39ÅAromatic
C6O6doub1.22Å1.23Å
C6N1sing1.35Å1.39Å
N1C2sing1.36Å1.38Å
N1HN1sing0.97Å1.02Å
C2N3doub1.30Å1.33Å
C2H2sing1.08Å1.10Å
N3C4sing1.34Å1.35Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
OP1POP2112.8°109.4°
OP1POP3114.7°109.5°
OP1PO5'105.1°109.5°
OP2POP3116.8°109.5°
OP2PO5'101.4°109.5°
POP2HOP2112.7°106.8°
OP3PO5'104.0°109.5°
POP3HOP3114.7°106.8°
PO5'C5'122.3°106.8°
O5'C5'C4'106.7°109.5°
O5'C5'H5'113.2°109.4°
O5'C5'H5''113.2°109.4°
C4'C5'H5'113.2°109.5°
C4'C5'H5''113.2°109.5°
C5'C4'O4'119.3°110.4°
C5'C4'C3'122.0°110.7°
C5'C4'H4'88.2°110.3°
H5'C5'H5''97.3°109.5°
O4'C4'C3'105.9°104.7°
O4'C4'H4'111.6°110.4°
C4'O4'C1'104.5°105.4°
C3'C4'H4'107.7°110.3°
C4'C3'O3'115.3°110.5°
C4'C3'C2'107.1°104.2°
C4'C3'H3'111.5°110.5°
O4'C1'C2'112.5°104.8°
O4'C1'N9116.7°110.5°
O4'C1'H1'108.8°110.4°
O3'C3'C2'119.4°110.5°
O3'C3'H3'96.2°110.5°
C3'O3'HO3'115.3°106.8°
C2'C3'H3'106.4°110.5°
C3'C2'C1'100.7°104.1°
C3'C2'H2'115.6°110.6°
C3'C2'H2''115.6°110.5°
C1'C2'H2'115.6°110.5°
C1'C2'H2''115.6°110.5°
C2'C1'N9122.2°110.4°
C2'C1'H1'99.3°110.4°
H2'C2'H2''94.8°110.5°
N9C1'H1'92.0°110.3°
C1'N9C8125.1°126.2°
C1'N9C4124.3°126.3°
C8N9C4108.5°107.4°
N9C8N7109.8°109.8°
N9C8H8125.1°125.1°
N9C4C5106.2°106.2°
N9C4N3131.6°134.2°
N7C8H8125.1°125.1°
C8N7C5107.0°109.2°
N7C5C6129.7°134.2°
N7C5C4108.5°107.3°
C6C5C4119.7°118.5°
C5C6O6128.5°120.9°
C5C6N1110.2°118.2°
C5C4N3122.0°119.6°
O6C6N1121.0°121.0°
C6N1C2126.7°120.4°
C6N1HN1117.0°119.8°
C2N1HN1116.3°119.8°
N1C2N3120.0°122.2°
N1C2H2121.9°118.9°
N3C2H2118.2°118.9°
C2N3C4120.4°121.3°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
OP1POP2OP3136.0°120.0°
OP1POP2O5'111.8°120.0°
OP1POP3O5'114.2°120.0°
OP1POP2HOP2180.0°60.1°
OP1POP3HOP3180.0°180.0°
OP1PO5'C5'38.9°60.0°
OP2POP3O5'110.7°120.0°
OP2POP3HOP344.9°60.1°
OP2PO5'C5'78.7°180.0°
OP3POP2HOP244.0°60.0°
OP3PO5'C5'159.8°60.0°
O5'POP2HOP268.2°180.0°
O5'POP3HOP365.8°59.9°
PO5'C5'C4'126.2°180.0°
PO5'C5'H5'108.6°60.0°
PO5'C5'H5''1.0°60.0°
O5'C5'C4'H5'125.2°119.9°
O5'C5'C4'H5''125.2°120.0°
O5'C5'H5'H5''119.2°120.0°
O5'C5'C4'O4'86.1°61.5°
O5'C5'C4'C3'50.0°176.9°
O5'C5'C4'H4'159.9°60.8°
C4'C5'H5'H5''119.2°120.0°
C5'C4'O4'C3'142.4°119.1°
C5'C4'O4'H4'100.7°122.2°
C5'C4'C3'H4'99.3°122.4°
C5'C4'O4'C1'111.8°159.5°
C5'C4'C3'O3'108.0°98.5°
C5'C4'C3'C2'116.4°142.7°
C5'C4'C3'H3'0.4°24.1°
H5'C5'C4'O4'148.6°178.6°
H5'C5'C4'C3'75.2°63.2°
H5'C5'C4'H4'34.7°59.2°
H5''C5'C4'O4'39.1°58.5°
H5''C5'C4'C3'175.3°56.9°
H5''C5'C4'H4'74.9°179.2°
O4'C4'C3'H4'119.6°118.7°
O4'C4'C3'O3'110.9°142.5°
O4'C4'C3'C2'24.7°23.8°
O4'C4'C3'H3'140.7°94.9°
C4'O4'C1'C2'26.6°40.4°
C4'O4'C1'N9122.0°159.3°
C4'O4'C1'H1'135.7°78.4°
C3'C4'O4'C1'30.5°40.3°
C4'C3'O3'C2'129.8°114.8°
C4'C3'O3'H3'117.4°122.6°
C4'C3'C2'H3'119.4°118.7°
C4'C3'O3'HO3'180.0°178.1°
C4'C3'C2'C1'8.4°0.1°
C4'C3'C2'H2'116.9°118.5°
C4'C3'C2'H2''133.7°118.8°
H4'C4'O4'C1'147.5°78.3°
H4'C4'C3'O3'8.7°23.8°
H4'C4'C3'C2'144.2°94.9°
H4'C4'C3'H3'99.7°146.4°
O4'C1'C2'C3'10.8°24.0°
O4'C1'C2'N9146.7°119.0°
O4'C1'C2'H1'115.0°118.8°
O4'C1'C2'H2'136.1°94.7°
O4'C1'C2'H2''114.5°142.6°
O4'C1'N9H1'112.3°122.3°
O4'C1'N9C8106.1°25.5°
O4'C1'N9C492.2°154.9°
O3'C3'C2'H3'107.2°122.6°
O3'C3'C2'C1'125.0°118.6°
O3'C3'C2'H2'109.7°122.7°
O3'C3'C2'H2''0.3°0.0°
C2'C3'O3'HO3'50.1°63.3°
C3'C2'C1'H2'125.3°118.7°
C3'C2'C1'H2''125.3°118.6°
C3'C2'H2'H2''121.4°122.7°
C3'C2'C1'N9135.9°143.0°
C3'C2'C1'H1'125.8°94.8°
H3'C3'O3'HO3'62.7°59.3°
H3'C3'C2'C1'127.8°118.8°
H3'C3'C2'H2'2.5°0.1°
H3'C3'C2'H2''106.8°122.6°
C1'C2'H2'H2''121.4°122.6°
C2'C1'N9H1'102.3°122.3°
C2'C1'N9C839.3°89.9°
C2'C1'N9C4122.4°89.7°
H2'C2'C1'N910.6°24.3°
H2'C2'C1'H1'108.9°146.5°
H2''C2'C1'N998.8°98.4°
H2''C2'C1'H1'0.5°23.8°
C1'N9C8C4164.1°179.7°
C1'N9C8N7163.7°180.0°
C1'N9C8H816.2°0.1°
C1'N9C4C5164.2°179.8°
C1'N9C4N320.8°0.8°
H1'C1'N9C8141.6°147.8°
H1'C1'N9C420.1°32.6°
N9C8N7H8180.0°179.9°
N9C8N7C50.5°0.1°
C8N9C4C50.1°0.5°
C8N9C4N3174.9°179.5°
C4N9C8N70.4°0.3°
C4N9C8H8179.7°179.8°
N9C4C5N70.2°0.5°
N9C4C5C6164.9°179.8°
N9C4C5N3175.6°179.2°
N9C4N3C2171.1°179.5°
C8N7C5C6162.7°179.9°
C8N7C5C40.5°0.2°
H8C8N7C5179.5°179.9°
N7C5C6C4161.6°179.7°
N7C5C6O63.9°0.0°
N7C5C6N1170.9°180.0°
N7C5C4N3175.8°179.6°
C5C6O6N1174.4°180.0°
C5C6N1C21.6°0.1°
C5C6N1HN1178.3°180.0°
C6C5C4N310.7°0.6°
C4C5C6O6165.5°179.7°
C4C5C6N19.3°0.3°
C5C4N3C23.2°0.6°
O6C6N1C2173.7°180.0°
O6C6N1HN16.4°0.0°
C6N1C2HN1179.9°179.9°
C6N1C2N35.5°0.1°
C6N1C2H2174.4°180.0°
N1C2N3H2179.9°179.9°
N1C2N3C44.9°0.2°
HN1N1C2N3174.5°179.9°
HN1N1C2H25.5°0.0°
H2C2N3C4175.0°179.7°

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