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OI6

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C4'C5'sing1.53Å1.48Å
C4'C3'sing1.54Å1.37Å
C1'C2'sing1.54Å1.64Å
C1'N9sing1.46Å1.46Å
C1'O4'sing1.44Å1.29Å
C2N3doub1.32Å1.33ÅAromatic
C2N1sing1.32Å1.31ÅAromatic
C3DC4Dsing1.54Å1.28Å
C3DC2Dsing1.55Å1.58Å
C3DO3Dsing1.43Å1.48Å
C4DC5Dsing1.53Å1.53Å
C5DO5Dsing1.43Å1.39Å
C5'O5'sing1.43Å1.42Å
C4C5doub1.41Å1.37ÅAromatic
C4N9sing1.37Å1.36ÅAromatic
C4N3sing1.33Å1.35ÅAromatic
C6C5sing1.41Å1.40ÅAromatic
C6N1doub1.33Å1.34ÅAromatic
C6N6sing1.38Å1.44Å
C5N7sing1.35Å1.33ÅAromatic
C8N9sing1.36Å1.33ÅAromatic
C8N7doub1.30Å1.34ÅAromatic
C8BR28sing1.89Å1.92Å
C2'C3'sing1.54Å1.52Å
C2'O2'sing1.43Å1.32Å
C3'O3'sing1.43Å1.46Å
C1DC2Dsing1.55Å1.55Å
C1DO4Dsing1.44Å1.29Å
C1DO1Dsing1.43Å1.42Å
C2DO2Dsing1.43Å1.33Å
O5DPBsing1.61Å1.73Å
O1BPBdoub1.48Å1.52Å
O2BPBsing1.61Å1.55Å
O3APBsing1.61Å1.63Å
O3APAsing1.61Å1.66Å
O1APAdoub1.48Å1.49Å
O2APAsing1.61Å1.51Å
O5'PAsing1.61Å1.68Å
C4'H'4sing1.09Å1.10Å
C1'H'1sing1.09Å1.10Å
C2H2sing1.08Å1.08Å
C3DHR'3sing1.09Å1.10Å
C4DHR'4sing1.09Å1.10Å
C5DH5R1sing1.09Å1.10Å
C5DH5R2sing1.09Å1.10Å
C5'H5'1sing1.09Å1.10Å
C5'H5'2sing1.09Å1.10Å
C2'H'2sing1.09Å1.10Å
C3'H'3sing1.09Å1.10Å
C2DHR'2sing1.09Å1.10Å
N6H61sing0.97Å1.00Å
N6H62sing0.97Å1.00Å
O3DHOR3sing0.97Å0.95Å
O2BHOB2sing0.97Å0.95Å
O2AHOA2sing0.97Å0.95Å
O2'HO'2sing0.97Å0.95Å
O3'HO'3sing0.97Å0.95Å
O1DHOR1sing0.97Å0.95Å
O2DHOR2sing0.97Å0.95Å
C4'O4'sing1.44Å1.68Å
C4DO4Dsing1.44Å1.67Å
C1DHR'1sing1.09Å1.10Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C5'C4'C3'113.1°110.4°
C4'C5'O5'109.0°109.5°
C5'C4'H'4109.1°110.3°
C4'C5'H5'1109.6°109.5°
C4'C5'H5'2109.6°109.5°
C5'C4'O4'109.9°110.4°
C4'C3'C2'105.6°104.1°
C4'C3'O3'110.3°110.5°
C3'C4'H'4110.6°110.4°
C4'C3'H'3112.5°110.5°
C3'C4'O4'107.3°104.8°
C2'C1'N9116.8°110.4°
C2'C1'O4'105.3°104.8°
C1'C2'C3'102.8°104.1°
C1'C2'O2'111.5°110.5°
C2'C1'H'1106.7°110.4°
C1'C2'H'2108.4°110.5°
N9C1'O4'107.8°110.4°
C1'N9C4120.9°126.3°
C1'N9C8132.4°126.3°
N9C1'H'1108.9°110.3°
O4'C1'H'1111.4°110.5°
C1'O4'C4'107.2°105.3°
N3C2N1122.2°122.5°
C2N3C4119.7°120.6°
N3C2H2118.9°118.8°
C2N1C6121.0°121.1°
N1C2H2118.9°118.7°
C4DC3DC2D105.3°104.1°
C4DC3DO3D108.7°110.5°
C3DC4DC5D113.8°109.8°
C4DC3DHR'3113.7°110.5°
C3DC4DHR'4112.2°109.8°
C3DC4DO4D107.7°107.3°
C2DC3DO3D109.4°110.5°
C3DC2DC1D102.0°102.1°
C3DC2DO2D112.7°110.9°
C2DC3DHR'3109.1°110.5°
C3DC2DHR'2109.1°110.9°
O3DC3DHR'3110.4°110.5°
C3DO3DHOR3109.5°114.0°
C4DC5DO5D106.5°109.4°
C5DC4DHR'4108.5°109.9°
C4DC5DH5R1110.2°109.5°
C4DC5DH5R2110.2°109.5°
C5DC4DO4D107.4°109.9°
C5DO5DPB118.5°123.0°
O5DC5DH5R1110.2°109.4°
O5DC5DH5R2110.2°109.4°
C5'O5'PA119.4°123.0°
O5'C5'H5'1109.6°109.4°
O5'C5'H5'2109.6°109.5°
C5C4N9108.1°106.0°
C5C4N3119.7°119.1°
C4C5C6118.7°118.2°
C4C5N7107.1°107.2°
N9C4N3132.2°134.9°
C4N9C8106.7°107.5°
C5C6N1118.7°118.5°
C5C6N6119.7°120.8°
C6C5N7134.2°134.7°
N1C6N6121.5°120.8°
C6N6H61109.5°120.0°
C6N6H62109.5°120.0°
C5N7C8108.4°109.5°
N9C8N7109.7°109.9°
N9C8BR28129.6°125.0°
N7C8BR28120.6°125.0°
C3'C2'O2'110.8°110.5°
C2'C3'O3'106.6°110.5°
C3'C2'H'2109.9°110.5°
C2'C3'H'3110.3°110.6°
O2'C2'H'2113.0°110.6°
C2'O2'HO'2109.5°114.0°
O3'C3'H'3111.2°110.5°
C3'O3'HO'3109.5°114.0°
C2DC1DO4D106.2°103.5°
C2DC1DO1D109.5°110.6°
C1DC2DO2D110.0°110.9°
C1DC2DHR'2109.5°111.0°
C2DC1DHR'1108.9°110.7°
O4DC1DO1D108.7°110.6°
C1DO4DC4D106.9°107.0°
O4DC1DHR'1112.9°110.7°
C1DO1DHOR1109.5°114.0°
O1DC1DHR'1110.6°110.7°
O2DC2DHR'2112.9°110.8°
C2DO2DHOR2109.5°114.0°
O5DPBO1B110.2°109.5°
O5DPBO2B108.5°109.5°
O5DPBO3A107.8°109.5°
O1BPBO2B112.7°109.5°
O1BPBO3A110.6°109.5°
O2BPBO3A106.8°109.5°
PBO2BHOB2109.5°114.0°
PBO3APA125.2°134.0°
O3APAO1A110.7°109.5°
O3APAO2A108.7°109.5°
O3APAO5'105.9°109.4°
O1APAO2A111.9°109.5°
O1APAO5'109.7°109.5°
O2APAO5'109.6°109.5°
PAO2AHOA2109.5°114.0°
H'4C4'O4'106.7°110.5°
HR'4C4DO4D106.9°110.1°
H5R1C5DH5R2109.4°109.5°
H5'1C5'H5'2109.5°109.5°
H61N6H62109.5°120.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C5'C4'C3'H'4122.6°122.2°
C5'C4'C3'O4'121.3°118.8°
C5'C4'O4'C1'127.0°159.3°
C4'C5'O5'H5'1119.9°120.0°
C4'C5'O5'H5'2119.9°120.1°
C5'C4'C3'C2'102.4°142.8°
C5'C4'C3'O3'142.7°98.6°
C4'C5'O5'PA154.2°180.0°
C5'C4'H'4O4'118.7°122.3°
C4'C5'H5'1H5'2120.3°120.0°
C5'C4'C3'H'317.9°24.1°
C4'C3'C2'C1'31.3°0.0°
C3'C4'O4'C1'3.7°40.5°
C3'C4'C5'O5'34.2°175.0°
C4'C3'C2'O3'117.3°118.6°
C4'C3'C2'H'3121.8°118.7°
C4'C3'C2'O2'150.5°118.6°
C4'C3'O3'H'3125.5°122.7°
C3'C4'H'4O4'116.4°115.5°
C3'C4'C5'H5'1154.1°55.0°
C3'C4'C5'H5'285.7°65.0°
C4'C3'C2'H'283.9°118.6°
C4'C3'O3'HO'3180.0°180.0°
C2'C1'N9O4'118.2°115.4°
C2'C1'N9H'1120.8°122.3°
C2'C1'O4'H'1115.2°118.9°
C2'C1'N9C4165.0°105.0°
C2'C1'N9C816.6°75.0°
C1'C2'C3'O2'119.2°118.7°
C1'C2'C3'H'2115.2°118.6°
C1'C2'O2'H'2122.3°122.6°
C1'C2'C3'O3'86.1°118.7°
C1'C2'C3'H'3153.1°118.6°
C1'C2'O2'HO'2180.0°179.9°
C2'C1'O4'C4'22.6°40.5°
N9C1'O4'H'1119.4°122.3°
C1'N9C4C5179.2°180.0°
C1'N9C4C8178.7°180.0°
C1'N9C4N31.0°0.0°
C1'N9C8N7178.5°180.0°
C1'N9C8BR281.6°0.1°
N9C1'C2'C3'154.0°142.8°
N9C1'C2'O2'87.3°98.5°
N9C1'C2'H'237.7°24.2°
N9C1'O4'C4'148.0°159.3°
O4'C1'N9C476.8°139.6°
O4'C1'N9C8101.6°40.4°
O4'C1'C2'C3'34.4°23.9°
O4'C1'C2'O2'153.1°142.6°
C1'O4'C4'H'4114.9°78.4°
O4'C1'C2'H'281.9°94.7°
N3C2N1H2180.0°179.7°
C2N3C4C50.7°0.0°
C2N3C4N9179.0°180.0°
N3C2N1C60.7°0.0°
N1C2N3C40.9°0.0°
C2N1C6C50.3°0.0°
C2N1C6N6179.9°180.0°
C4DC3DC2DO3D116.7°118.7°
C4DC3DC2DHR'3122.5°118.6°
C4DC3DO3DHR'3125.4°122.6°
C3DC4DC5DHR'4125.7°120.9°
C3DC4DC5DO4D119.1°117.8°
C3DC4DC5DO5D175.2°175.0°
C4DC3DC2DC1D32.8°20.9°
C3DC4DO4DC1D0.1°26.5°
C4DC3DC2DO2D150.7°139.1°
C3DC4DHR'4O4D117.9°117.9°
C3DC4DC5DH5R155.7°55.0°
C3DC4DC5DH5R265.2°65.1°
C4DC3DC2DHR'283.0°97.3°
C4DC3DO3DHOR3180.0°179.9°
C2DC3DO3DHR'3120.1°122.6°
C2DC3DC4DC5D98.2°121.5°
C3DC2DC1DO2D119.9°118.2°
C3DC2DC1DHR'2115.5°118.3°
C3DC2DC1DO4D33.1°37.1°
C3DC2DC1DO1D150.3°155.6°
C3DC2DO2DHR'2124.3°123.6°
C2DC3DC4DHR'4138.1°117.6°
C2DC3DO3DHOR365.5°65.2°
C3DC2DO2DHOR2180.0°180.0°
C2DC3DC4DO4D20.7°2.0°
C3DC2DC1DHR'188.7°81.5°
O3DC3DC4DC5D144.6°119.8°
O3DC3DC2DC1D83.8°97.8°
O3DC3DC2DO2D34.1°20.4°
O3DC3DC4DHR'421.0°1.1°
O3DC3DC2DHR'2160.4°144.0°
O3DC3DC4DO4D96.5°120.7°
C4DC5DO5DH5R1119.5°120.0°
C4DC5DO5DH5R2119.5°120.0°
C5DC4DO4DC1D123.1°145.9°
C4DC5DO5DPB159.8°180.0°
C5DC4DC3DHR'321.2°2.8°
C5DC4DHR'4O4D115.5°121.2°
C4DC5DH5R1H5R2121.3°120.1°
C5DO5DPBO1B170.7°55.0°
C5DO5DPBO2B46.7°65.0°
C5DO5DPBO3A68.6°175.0°
O5DC5DC4DHR'449.5°54.1°
O5DC5DH5R1H5R2121.4°119.9°
O5DC5DC4DO4D65.7°67.2°
C5'O5'PAO3A40.2°175.1°
C5'O5'PAO1A159.7°55.1°
C5'O5'PAO2A77.0°64.9°
O5'C5'C4'H'4157.7°52.7°
O5'C5'H5'1H5'2120.2°120.0°
O5'C5'C4'O4'85.7°69.7°
C5C4N9N3179.8°180.0°
C4C5C6N7179.7°179.9°
C4C5C6N10.2°0.1°
C4C5C6N6180.0°180.0°
C5C4N9C80.5°0.0°
C4C5N7C80.9°0.0°
N9C4C5C6179.4°179.9°
N9C4C5N70.8°0.0°
C4N9C8N70.1°0.0°
C4N9C8BR28179.9°179.9°
C4N9C1'H'144.2°17.3°
N3C4C5C60.4°0.1°
N3C4C5N7179.4°180.0°
N3C4N9C8179.7°180.0°
C4N3C2H2179.1°179.7°
C5C6N1N6179.8°179.9°
C6C5N7C8179.4°179.9°
C5C6N6H61179.8°0.1°
C5C6N6H6259.8°180.0°
N1C6C5N7179.5°180.0°
C6N1C2H2179.3°179.7°
N1C6N6H610.0°180.0°
N1C6N6H62120.0°0.0°
N6C6C5N70.3°0.1°
C6N6H61H62120.0°179.9°
C5N7C8N90.6°0.0°
C5N7C8BR28179.4°179.9°
N9C8N7BR28180.0°179.9°
C8N9C1'H'1137.4°162.7°
C3'C2'O2'H'2123.8°122.7°
C2'C3'O3'H'3120.3°122.7°
C2'C3'C4'H'4134.9°95.0°
C3'C2'C1'H'184.0°95.0°
C3'C2'O2'HO'266.2°65.4°
C2'C3'O3'HO'365.8°65.4°
C2'C3'C4'O4'18.9°24.0°
O2'C2'C3'O3'33.2°0.0°
O2'C2'C1'H'134.7°23.7°
O2'C2'C3'H'387.7°122.7°
O3'C3'C4'H'420.1°23.7°
O3'C3'C2'H'2158.8°122.8°
O3'C3'C4'O4'95.9°142.6°
C2DC1DO4DO1D117.7°118.4°
C2DC1DO4DHR'1119.2°118.6°
C2DC1DO1DHR'1120.0°123.0°
C1DC2DO2DHR'2122.6°123.7°
C1DC2DC3DHR'3155.3°139.6°
C2DC1DO1DHOR1180.0°180.0°
C1DC2DO2DHOR266.9°67.3°
C2DC1DO4DC4D21.3°40.1°
O4DC1DO1DHR'1124.4°123.0°
O4DC1DC2DO2D153.0°155.2°
C1DO4DC4DHR'4120.7°92.9°
O4DC1DC2DHR'282.4°81.2°
O4DC1DO1DHOR164.4°66.0°
O1DC1DC2DO2D89.9°86.3°
O1DC1DC2DHR'234.7°37.3°
O1DC1DO4DC4D139.0°158.5°
O2DC2DC3DHR'386.8°102.2°
O2DC2DC1DHR'131.2°36.7°
O5DPBO1BO2B121.5°120.0°
O5DPBO1BO3A119.0°120.0°
O5DPBO2BO3A115.9°120.0°
O5DPBO3APA77.2°165.0°
PBO5DC5DH5R180.7°60.0°
PBO5DC5DH5R240.3°60.0°
O5DPBO2BHOB2122.4°60.0°
O1BPBO2BO3A121.6°120.0°
O1BPBO3APA43.4°45.0°
O1BPBO2BHOB20.0°180.0°
O2BPBO3APA166.4°75.0°
PBO3APAO1A28.6°45.0°
PBO3APAO2A151.9°75.0°
PBO3APAO5'90.3°165.0°
O3APBO2BHOB2121.7°60.0°
O3APAO1AO2A121.5°120.0°
O3APAO1AO5'116.6°120.0°
O3APAO2AO5'115.4°120.0°
O3APAO2AHOA2122.6°60.0°
O1APAO2AO5'122.0°120.0°
O1APAO2AHOA20.0°180.0°
PAO5'C5'H5'134.2°60.1°
PAO5'C5'H5'285.9°59.9°
O5'PAO2AHOA2122.0°60.0°
H'4C4'C5'H5'182.4°67.2°
H'4C4'C5'H5'237.8°172.8°
H'4C4'C3'H'3104.7°146.3°
H'1C1'C2'H'2159.7°146.4°
H'1C1'O4'C4'92.6°78.4°
HR'3C3DC4DHR'4102.4°123.8°
HR'3C3DC2DHR'239.5°21.3°
HR'3C3DO3DHOR354.6°57.4°
HR'3C3DC4DO4D140.1°116.6°
HR'4C4DC5DH5R170.0°65.9°
HR'4C4DC5DH5R2169.1°174.0°
H5R1C5DC4DO4D174.7°172.8°
H5R2C5DC4DO4D53.9°52.7°
H5'1C5'C4'O4'34.3°170.4°
H5'2C5'C4'O4'154.5°50.4°
H'2C2'C3'H'337.9°0.1°
H'2C2'O2'HO'257.6°57.3°
H'3C3'O3'HO'354.5°57.3°
H'3C3'C4'O4'139.2°94.7°
HR'2C2DO2DHOR255.7°56.3°
HR'2C2DC1DHR'1155.8°160.3°
HOR1O1DC1DHR'160.0°57.0°
C4DO4DC1DHR'197.8°78.4°

222036

PDB entries from 2024-07-03

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