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OI3

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C4'C5'sing1.53Å1.56Å
C4'C3'sing1.54Å1.55Å
C4'O4'sing1.44Å1.28Å
C1'C2'sing1.55Å1.30Å
C1'N9sing1.47Å1.45Å
C1'O4'sing1.44Å1.61Å
C5C6doub1.41Å1.41ÅAromatic
C5C4sing1.41Å1.38ÅAromatic
C5N7sing1.35Å1.34ÅAromatic
C6N6sing1.38Å1.45Å
C6N1sing1.33Å1.32ÅAromatic
C2'C3'sing1.55Å1.51Å
C2'F1sing1.40Å1.46Å
C3DC4Dsing1.54Å1.30Å
C3DC2Dsing1.55Å1.56Å
C3DO3Dsing1.43Å1.49Å
C4DC5Dsing1.53Å1.49Å
C5DO5Dsing1.43Å1.40Å
C5'O5'sing1.43Å1.39Å
C8N9sing1.36Å1.32ÅAromatic
C8N7doub1.30Å1.33ÅAromatic
C2N1doub1.32Å1.33ÅAromatic
C2N3sing1.32Å1.32ÅAromatic
C4N9sing1.37Å1.35ÅAromatic
C4N3doub1.33Å1.34ÅAromatic
C3'O3'sing1.43Å1.37Å
C1DC2Dsing1.55Å1.57Å
C1DO4Dsing1.44Å1.29Å
C1DO1Dsing1.43Å1.41Å
C2DO2Dsing1.43Å1.33Å
O5DPBsing1.61Å1.65Å
O1BPBdoub1.48Å1.50Å
O2BPBsing1.61Å1.50Å
O3APBsing1.61Å1.64Å
O3APAsing1.61Å1.64Å
O1APAdoub1.48Å1.52Å
O2APAsing1.61Å1.51Å
O5'PAsing1.61Å1.62Å
C4'H'4sing1.09Å1.10Å
C1'H'1sing1.09Å1.10Å
C2'H'2sing1.09Å1.10Å
C3DHR'3sing1.09Å1.10Å
C4DHR'4sing1.09Å1.10Å
C5DH5R1sing1.09Å1.10Å
C5DH5R2sing1.09Å1.10Å
C5'H5'1sing1.09Å1.10Å
C5'H5'2sing1.09Å1.10Å
C8H8sing1.08Å1.08Å
C2H2sing1.08Å1.08Å
C3'H'3sing1.09Å1.10Å
C2DHR'2sing1.09Å1.10Å
N6H61sing0.97Å1.00Å
N6H62sing0.97Å1.00Å
O3DHOR3sing0.97Å0.95Å
O2BHOB2sing0.97Å0.95Å
O2AHOA2sing0.97Å0.95Å
O3'HO'3sing0.97Å0.95Å
O1DHOR1sing0.97Å0.95Å
O2DHOR2sing0.97Å0.95Å
C4DO4Dsing1.44Å1.67Å
C1DHR'1sing1.09Å1.10Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C5'C4'C3'110.6°110.4°
C5'C4'O4'110.0°110.4°
C4'C5'O5'107.1°109.5°
C5'C4'H'4108.4°110.4°
C4'C5'H5'1110.1°109.5°
C4'C5'H5'2110.1°109.4°
C3'C4'O4'106.7°104.8°
C4'C3'C2'103.4°104.1°
C4'C3'O3'108.9°110.5°
C3'C4'H'4108.5°110.4°
C4'C3'H'3110.4°110.5°
C4'O4'C1'107.2°105.3°
O4'C4'H'4112.6°110.4°
C2'C1'N9114.8°110.3°
C2'C1'O4'105.6°104.8°
C1'C2'C3'103.1°104.0°
C1'C2'F1112.0°110.5°
C2'C1'H'1112.1°110.3°
C1'C2'H'2113.8°110.5°
N9C1'O4'106.2°110.4°
C1'N9C8127.6°126.3°
C1'N9C4124.2°126.3°
N9C1'H'1109.8°110.4°
O4'C1'H'1107.7°110.5°
C6C5C4117.8°118.2°
C6C5N7136.1°134.7°
C5C6N6121.5°120.8°
C5C6N1120.5°118.4°
C4C5N7106.1°107.1°
C5C4N9107.7°106.0°
C5C4N3119.2°119.1°
C5N7C8109.2°109.4°
N6C6N1118.1°120.8°
C6N6H61109.5°120.0°
C6N6H62109.5°120.0°
C6N1C2119.4°121.2°
C3'C2'F1106.0°110.6°
C2'C3'O3'109.7°110.5°
C3'C2'H'2110.3°110.5°
C2'C3'H'3110.9°110.5°
F1C2'H'2111.0°110.6°
C4DC3DC2D103.9°104.2°
C4DC3DO3D106.8°110.5°
C3DC4DC5D111.8°109.9°
C4DC3DHR'3114.1°110.5°
C3DC4DHR'4112.1°109.9°
C3DC4DO4D107.6°107.3°
C2DC3DO3D110.8°110.5°
C3DC2DC1D100.3°102.1°
C3DC2DO2D113.5°110.9°
C2DC3DHR'3110.0°110.5°
C3DC2DHR'2109.5°110.9°
O3DC3DHR'3111.0°110.5°
C3DO3DHOR3109.5°114.0°
C4DC5DO5D106.6°109.5°
C5DC4DHR'4109.1°109.9°
C4DC5DH5R1110.2°109.5°
C4DC5DH5R2110.2°109.5°
C5DC4DO4D109.1°109.9°
C5DO5DPB118.6°123.1°
O5DC5DH5R1110.2°109.4°
O5DC5DH5R2110.2°109.5°
C5'O5'PA116.0°123.0°
O5'C5'H5'1110.1°109.5°
O5'C5'H5'2110.1°109.5°
N9C8N7108.8°110.0°
C8N9C4108.2°107.4°
N9C8H8125.6°125.0°
N7C8H8125.6°125.0°
N1C2N3122.6°122.4°
N1C2H2118.7°118.8°
C2N3C4120.6°120.7°
N3C2H2118.7°118.8°
N9C4N3133.1°134.9°
O3'C3'H'3113.2°110.6°
C3'O3'HO'3109.5°114.0°
C2DC1DO4D102.5°103.5°
C2DC1DO1D109.7°110.6°
C1DC2DO2D110.4°110.9°
C1DC2DHR'2109.4°110.9°
C2DC1DHR'1109.4°110.7°
O4DC1DO1D109.5°110.6°
C1DO4DC4D104.7°106.9°
O4DC1DHR'1113.8°110.6°
C1DO1DHOR1109.5°114.1°
O1DC1DHR'1111.6°110.6°
O2DC2DHR'2113.0°110.9°
C2DO2DHOR2109.5°114.0°
O5DPBO1B109.1°109.5°
O5DPBO2B107.4°109.5°
O5DPBO3A107.7°109.5°
O1BPBO2B112.6°109.4°
O1BPBO3A107.7°109.5°
O2BPBO3A112.3°109.4°
PBO2BHOB2109.5°114.0°
PBO3APA125.2°134.0°
O3APAO1A107.7°109.5°
O3APAO2A111.3°109.5°
O3APAO5'105.9°109.5°
O1APAO2A112.7°109.5°
O1APAO5'109.1°109.5°
O2APAO5'109.8°109.5°
PAO2AHOA2109.5°114.0°
HR'4C4DO4D107.1°110.0°
H5R1C5DH5R2109.5°109.5°
H5'1C5'H5'2109.5°109.5°
H61N6H62109.5°120.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C5'C4'C3'O4'119.6°118.9°
C5'C4'C3'H'4118.8°122.3°
C5'C4'O4'H'4121.0°122.3°
C5'C4'O4'C1'121.4°159.4°
C5'C4'C3'C2'100.3°142.8°
C4'C5'O5'H5'1119.7°120.0°
C4'C5'O5'H5'2119.6°120.0°
C5'C4'C3'O3'143.1°98.5°
C4'C5'O5'PA142.9°180.0°
C4'C5'H5'1H5'2121.1°120.0°
C5'C4'C3'H'318.3°24.2°
C3'C4'O4'H'4119.0°118.8°
C4'C3'C2'C1'35.7°0.0°
C3'C4'O4'C1'1.4°40.5°
C4'C3'C2'O3'116.0°118.7°
C4'C3'C2'H'3118.3°118.7°
C4'C3'C2'F1153.5°118.6°
C3'C4'C5'O5'20.1°175.0°
C4'C3'O3'H'3123.1°122.7°
C4'C3'C2'H'286.2°118.6°
C3'C4'C5'H5'1139.8°55.0°
C3'C4'C5'H5'299.5°65.0°
C4'C3'O3'HO'3180.0°180.0°
C4'O4'C1'C2'25.6°40.5°
C4'O4'C1'N9147.9°159.3°
O4'C4'C3'C2'19.3°24.0°
O4'C4'C5'O5'97.5°69.6°
O4'C4'C3'O3'97.3°142.6°
C4'O4'C1'H'194.4°78.3°
O4'C4'C5'H5'122.1°170.4°
O4'C4'C5'H5'2142.9°50.4°
O4'C4'C3'H'3138.0°94.7°
C2'C1'N9O4'116.3°115.3°
C2'C1'N9H'1127.5°122.2°
C2'C1'O4'H'1120.0°118.8°
C1'C2'C3'F1117.9°118.6°
C1'C2'C3'H'2121.8°118.6°
C1'C2'F1H'2128.4°122.7°
C2'C1'N9C814.3°95.0°
C2'C1'N9C4167.4°85.0°
C1'C2'C3'O3'80.3°118.7°
C1'C2'C3'H'3154.0°118.7°
N9C1'O4'H'1117.6°122.4°
C1'N9C4C5179.5°180.0°
N9C1'C2'C3'152.8°142.8°
N9C1'C2'F193.6°98.5°
C1'N9C8C4178.5°180.0°
C1'N9C8N7179.0°179.8°
C1'N9C4N30.5°0.0°
N9C1'C2'H'233.4°24.2°
C1'N9C8H81.0°0.0°
O4'C1'C2'C3'36.2°24.0°
O4'C1'C2'F1149.7°142.7°
O4'C1'N9C8102.0°20.3°
O4'C1'N9C476.3°159.7°
C1'O4'C4'H'4117.6°78.3°
O4'C1'C2'H'283.3°94.6°
C6C5C4N7179.8°179.8°
C5C6N6N1178.9°180.0°
C6C5N7C8179.6°179.9°
C5C6N1C21.0°0.0°
C6C5C4N9179.2°180.0°
C6C5C4N30.7°0.0°
C5C6N6H61178.9°0.0°
C5C6N6H6258.9°180.0°
C4C5C6N6179.7°179.9°
C4C5C6N10.8°0.0°
C5C4N9C80.9°0.0°
C4C5N7C80.7°0.4°
C5C4N3C21.0°0.1°
C5C4N9N3180.0°180.0°
N7C5C6N60.0°0.3°
N7C5C6N1178.9°179.7°
C5N7C8N90.1°0.4°
N7C5C4N91.0°0.2°
N7C5C4N3179.0°179.8°
C5N7C8H8179.9°179.8°
N6C6N1C2180.0°179.9°
C6N6H61H62120.0°180.0°
C6N1C2N31.3°0.1°
C6N1C2H2178.7°180.0°
N1C6N6H610.0°180.0°
N1C6N6H62120.0°0.0°
C3'C2'F1H'2119.8°122.7°
C2'C3'O3'H'3124.4°122.6°
C2'C3'C4'H'4140.9°94.9°
C3'C2'C1'H'180.9°95.0°
C2'C3'O3'HO'367.5°65.4°
F1C2'C3'O3'37.5°0.0°
F1C2'C1'H'132.7°23.7°
F1C2'C3'H'388.2°122.7°
C4DC3DC2DO3D114.4°118.7°
C4DC3DC2DHR'3122.6°118.7°
C4DC3DO3DHR'3125.0°122.6°
C3DC4DC5DHR'4124.5°121.0°
C3DC4DC5DO4D118.9°117.9°
C3DC4DC5DO5D169.0°175.0°
C4DC3DC2DC1D37.5°20.9°
C3DC4DO4DC1D12.2°26.5°
C4DC3DC2DO2D155.3°139.1°
C3DC4DHR'4O4D117.7°118.0°
C3DC4DC5DH5R149.5°55.0°
C3DC4DC5DH5R271.4°65.0°
C4DC3DC2DHR'277.5°97.3°
C4DC3DO3DHOR3180.0°180.0°
C2DC3DO3DHR'3122.5°122.6°
C2DC3DC4DC5D102.1°121.5°
C3DC2DC1DO2D120.0°118.2°
C3DC2DC1DHR'2115.1°118.1°
C3DC2DC1DO4D46.1°37.0°
C3DC2DC1DO1D162.4°155.5°
C3DC2DO2DHR'2125.4°123.6°
C2DC3DC4DHR'4135.1°117.5°
C2DC3DO3DHOR367.4°65.2°
C3DC2DO2DHOR2180.0°179.9°
C2DC3DC4DO4D17.7°2.1°
C3DC2DC1DHR'174.9°81.5°
O3DC3DC4DC5D140.7°119.8°
O3DC3DC2DC1D76.9°97.8°
O3DC3DC2DO2D40.9°20.4°
O3DC3DC4DHR'417.9°1.1°
O3DC3DC2DHR'2168.1°144.0°
O3DC3DC4DO4D99.5°120.7°
C4DC5DO5DH5R1119.5°120.0°
C4DC5DO5DH5R2119.5°120.0°
C5DC4DO4DC1D133.6°146.0°
C4DC5DO5DPB147.8°180.0°
C5DC4DC3DHR'317.7°2.8°
C5DC4DHR'4O4D118.0°121.1°
C4DC5DH5R1H5R2121.3°120.0°
C5DO5DPBO1B55.4°55.0°
C5DO5DPBO2B177.7°65.0°
C5DO5DPBO3A61.1°175.0°
O5DC5DC4DHR'444.5°54.0°
O5DC5DH5R1H5R2121.3°120.0°
O5DC5DC4DO4D72.1°67.2°
C5'O5'PAO3A54.8°175.0°
C5'O5'PAO1A61.0°55.0°
C5'O5'PAO2A175.1°65.0°
O5'C5'C4'H'4139.0°52.7°
O5'C5'H5'1H5'2121.1°120.0°
N9C8N7H8180.0°179.8°
C8N9C4N3179.1°180.0°
C8N9C1'H'1141.8°142.8°
N7C8N9C40.5°0.2°
N1C2N3H2180.0°179.9°
N1C2N3C41.3°0.1°
C2N3C4N9179.0°180.0°
C4N9C1'H'139.9°37.2°
C4N9C8H8179.5°179.9°
C4N3C2H2178.7°180.0°
O3'C3'C4'H'424.4°23.7°
O3'C3'C2'H'2157.8°122.7°
C2DC1DO4DO1D116.4°118.5°
C2DC1DO4DHR'1118.0°118.6°
C2DC1DO1DHR'1121.4°123.0°
C1DC2DO2DHR'2122.9°123.7°
C1DC2DC3DHR'3160.1°139.5°
C2DC1DO1DHOR1180.0°180.0°
C1DC2DO2DHOR268.3°67.4°
C2DC1DO4DC4D35.0°40.1°
O4DC1DO1DHR'1126.9°122.9°
O4DC1DC2DO2D166.1°155.2°
C1DO4DC4DHR'4108.4°93.0°
O4DC1DC2DHR'268.9°81.1°
O4DC1DO1DHOR168.2°65.9°
O1DC1DC2DO2D77.6°86.3°
O1DC1DC2DHR'247.4°37.4°
O1DC1DO4DC4D151.5°158.6°
O2DC2DC3DHR'382.2°102.3°
O2DC2DC1DHR'145.1°36.7°
O5DPBO1BO2B119.1°120.0°
O5DPBO1BO3A116.6°120.1°
O5DPBO2BO3A118.2°120.1°
O5DPBO3APA96.1°160.0°
PBO5DC5DH5R192.7°60.0°
PBO5DC5DH5R228.2°60.0°
O5DPBO2BHOB2120.1°60.0°
O1BPBO2BO3A121.7°119.9°
O1BPBO3APA146.5°39.9°
O1BPBO2BHOB20.0°180.0°
O2BPBO3APA21.9°80.0°
PBO3APAO1A167.5°40.0°
PBO3APAO2A43.5°80.0°
PBO3APAO5'75.8°160.0°
O3APBO2BHOB2121.7°60.1°
O3APAO1AO2A123.2°120.0°
O3APAO1AO5'114.6°120.0°
O3APAO2AO5'117.0°120.0°
O3APAO2AHOA2121.2°60.0°
O1APAO2AO5'121.8°120.0°
O1APAO2AHOA20.0°180.0°
PAO5'C5'H5'123.2°60.0°
PAO5'C5'H5'297.5°60.0°
O5'PAO2AHOA2121.8°60.0°
H'4C4'C5'H5'1101.4°67.3°
H'4C4'C5'H5'219.4°172.7°
H'4C4'C3'H'3100.4°146.5°
H'1C1'C2'H'2159.7°146.4°
H'2C2'C3'H'332.1°0.1°
HR'3C3DC4DHR'4105.1°123.8°
HR'3C3DC2DHR'245.1°21.4°
HR'3C3DO3DHOR355.0°57.4°
HR'3C3DC4DO4D137.5°116.6°
HR'4C4DC5DH5R175.0°66.0°
HR'4C4DC5DH5R2164.1°174.0°
H5R1C5DC4DO4D168.3°172.9°
H5R2C5DC4DO4D47.4°52.8°
H'3C3'O3'HO'356.9°57.3°
HR'2C2DO2DHOR254.6°56.3°
HR'2C2DC1DHR'1170.0°160.4°
HOR1O1DC1DHR'158.7°57.0°
C4DO4DC1DHR'182.9°78.5°

221716

PDB entries from 2024-06-26

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