OH9
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| O3' | C3' | sing | 1.43Å | 1.48Å | |
| C3' | C4' | sing | 1.54Å | 1.36Å | |
| C3' | C2' | sing | 1.55Å | 1.57Å | |
| O2' | C2' | sing | 1.43Å | 1.37Å | |
| C4' | O4' | sing | 1.44Å | 1.67Å | |
| C4' | C5' | sing | 1.53Å | 1.47Å | |
| C1' | C2' | sing | 1.55Å | 1.58Å | |
| C1' | O4' | sing | 1.44Å | 1.33Å | |
| C1' | N9 | sing | 1.46Å | 1.45Å | |
| N3 | C2 | doub | 1.32Å | 1.34Å | Aromatic |
| N3 | C4 | sing | 1.33Å | 1.36Å | Aromatic |
| C2 | N1 | sing | 1.32Å | 1.35Å | Aromatic |
| C5' | O5' | sing | 1.43Å | 1.47Å | |
| C4 | N9 | sing | 1.37Å | 1.34Å | Aromatic |
| C4 | C5 | doub | 1.40Å | 1.37Å | Aromatic |
| N9 | C8 | sing | 1.36Å | 1.35Å | Aromatic |
| N1 | C6 | doub | 1.33Å | 1.31Å | Aromatic |
| O5' | PA | sing | 1.61Å | 1.63Å | |
| C5 | C6 | sing | 1.41Å | 1.44Å | Aromatic |
| C5 | N7 | sing | 1.35Å | 1.37Å | Aromatic |
| C8 | N7 | doub | 1.30Å | 1.32Å | Aromatic |
| C6 | N6 | sing | 1.38Å | 1.43Å | |
| O3B | PB | doub | 1.48Å | 1.54Å | |
| O2B | PB | sing | 1.61Å | 1.53Å | |
| PA | O3A | sing | 1.61Å | 1.62Å | |
| PA | O1A | doub | 1.48Å | 1.48Å | |
| PA | O2A | sing | 1.61Å | 1.53Å | |
| PB | O3A | sing | 1.61Å | 1.64Å | |
| PB | O1B | sing | 1.61Å | 1.66Å | |
| O1B | C01 | sing | 1.43Å | 1.42Å | |
| C2 | H2 | sing | 1.08Å | 1.08Å | |
| C01 | H1 | sing | 1.09Å | 1.10Å | |
| C01 | H3 | sing | 1.09Å | 1.10Å | |
| C01 | H4 | sing | 1.09Å | 1.10Å | |
| C5' | H5'1 | sing | 1.09Å | 1.10Å | |
| C5' | H5'2 | sing | 1.09Å | 1.10Å | |
| C4' | H4' | sing | 1.09Å | 1.10Å | |
| C1' | H1' | sing | 1.09Å | 1.10Å | |
| C8 | H8 | sing | 1.08Å | 1.08Å | |
| C2' | H2' | sing | 1.09Å | 1.10Å | |
| C3' | H3' | sing | 1.09Å | 1.10Å | |
| N6 | HN61 | sing | 0.97Å | 1.00Å | |
| N6 | HN62 | sing | 0.97Å | 1.00Å | |
| O2B | HOB2 | sing | 0.97Å | 0.95Å | |
| O2A | HOA2 | sing | 0.97Å | 0.95Å | |
| O2' | HO2' | sing | 0.97Å | 0.95Å | |
| O3' | HO3' | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O3' | C3' | C4' | 109.4° | 110.5° |
| O3' | C3' | C2' | 110.0° | 110.5° |
| O3' | C3' | H3' | 110.3° | 110.5° |
| C3' | O3' | HO3' | 109.5° | 114.1° |
| C4' | C3' | C2' | 105.9° | 104.2° |
| C3' | C4' | O4' | 105.5° | 107.3° |
| C3' | C4' | C5' | 116.3° | 109.9° |
| C3' | C4' | H4' | 111.1° | 110.0° |
| C4' | C3' | H3' | 112.1° | 110.5° |
| C3' | C2' | O2' | 114.8° | 111.0° |
| C3' | C2' | C1' | 99.9° | 102.1° |
| C3' | C2' | H2' | 109.0° | 110.9° |
| C2' | C3' | H3' | 109.1° | 110.5° |
| O2' | C2' | C1' | 111.7° | 110.9° |
| O2' | C2' | H2' | 111.9° | 110.8° |
| C2' | O2' | HO2' | 109.5° | 114.0° |
| O4' | C4' | C5' | 106.8° | 109.9° |
| C4' | O4' | C1' | 106.6° | 106.9° |
| O4' | C4' | H4' | 107.1° | 109.9° |
| C4' | C5' | O5' | 106.6° | 109.5° |
| C4' | C5' | H5'1 | 110.2° | 109.5° |
| C4' | C5' | H5'2 | 110.2° | 109.4° |
| C5' | C4' | H4' | 109.5° | 109.8° |
| C2' | C1' | O4' | 105.0° | 103.5° |
| C2' | C1' | N9 | 112.3° | 110.6° |
| C2' | C1' | H1' | 109.0° | 110.6° |
| C1' | C2' | H2' | 108.8° | 110.9° |
| O4' | C1' | N9 | 106.8° | 110.6° |
| O4' | C1' | H1' | 112.8° | 110.6° |
| C1' | N9 | C4 | 121.8° | 126.3° |
| C1' | N9 | C8 | 129.3° | 126.3° |
| N9 | C1' | H1' | 110.8° | 110.7° |
| C2 | N3 | C4 | 119.7° | 120.6° |
| N3 | C2 | N1 | 120.6° | 122.5° |
| N3 | C2 | H2 | 119.7° | 118.7° |
| N3 | C4 | N9 | 131.4° | 134.9° |
| N3 | C4 | C5 | 121.5° | 119.1° |
| C2 | N1 | C6 | 121.9° | 121.2° |
| N1 | C2 | H2 | 119.7° | 118.8° |
| C5' | O5' | PA | 121.4° | 123.0° |
| O5' | C5' | H5'1 | 110.2° | 109.5° |
| O5' | C5' | H5'2 | 110.2° | 109.5° |
| N9 | C4 | C5 | 107.1° | 106.0° |
| C4 | N9 | C8 | 108.8° | 107.4° |
| C4 | C5 | C6 | 116.6° | 118.2° |
| C4 | C5 | N7 | 107.3° | 107.1° |
| N9 | C8 | N7 | 108.9° | 110.0° |
| N9 | C8 | H8 | 125.6° | 125.0° |
| N1 | C6 | C5 | 119.6° | 118.4° |
| N1 | C6 | N6 | 119.4° | 120.8° |
| O5' | PA | O3A | 106.3° | 109.5° |
| O5' | PA | O1A | 106.9° | 109.5° |
| O5' | PA | O2A | 110.6° | 109.5° |
| C6 | C5 | N7 | 136.1° | 134.7° |
| C5 | C6 | N6 | 121.0° | 120.8° |
| C5 | N7 | C8 | 107.9° | 109.4° |
| N7 | C8 | H8 | 125.6° | 125.1° |
| C6 | N6 | HN61 | 109.5° | 120.0° |
| C6 | N6 | HN62 | 109.5° | 120.0° |
| O3B | PB | O2B | 114.8° | 109.4° |
| O3B | PB | O3A | 111.1° | 109.5° |
| O3B | PB | O1B | 109.0° | 109.5° |
| O2B | PB | O3A | 104.2° | 109.5° |
| O2B | PB | O1B | 110.9° | 109.5° |
| PB | O2B | HOB2 | 109.5° | 114.0° |
| O3A | PA | O1A | 114.1° | 109.4° |
| O3A | PA | O2A | 105.3° | 109.5° |
| PA | O3A | PB | 128.7° | 134.0° |
| O1A | PA | O2A | 113.4° | 109.5° |
| PA | O2A | HOA2 | 109.5° | 114.0° |
| O3A | PB | O1B | 106.4° | 109.5° |
| PB | O1B | C01 | 116.6° | 123.0° |
| O1B | C01 | H1 | 109.5° | 109.4° |
| O1B | C01 | H3 | 109.5° | 109.5° |
| O1B | C01 | H4 | 109.5° | 109.5° |
| H1 | C01 | H3 | 109.5° | 109.5° |
| H1 | C01 | H4 | 109.5° | 109.5° |
| H3 | C01 | H4 | 109.5° | 109.5° |
| H5'1 | C5' | H5'2 | 109.5° | 109.5° |
| HN61 | N6 | HN62 | 109.5° | 120.0° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O3' | C3' | C4' | C2' | 118.5° | 118.7° |
| O3' | C3' | C4' | H3' | 122.6° | 122.6° |
| O3' | C3' | C2' | H3' | 121.1° | 122.5° |
| O3' | C3' | C2' | O2' | 39.2° | 20.4° |
| O3' | C3' | C4' | O4' | 96.5° | 120.7° |
| O3' | C3' | C4' | C5' | 145.4° | 119.8° |
| O3' | C3' | C2' | C1' | 80.4° | 97.9° |
| O3' | C3' | C4' | H4' | 19.3° | 1.2° |
| O3' | C3' | C2' | H2' | 165.7° | 144.0° |
| C4' | C3' | C2' | H3' | 120.8° | 118.7° |
| C4' | C3' | C2' | O2' | 157.3° | 139.1° |
| C3' | C4' | O4' | C5' | 124.3° | 119.5° |
| C3' | C4' | O4' | H4' | 118.5° | 119.6° |
| C3' | C4' | C5' | H4' | 126.9° | 121.2° |
| C4' | C3' | C2' | C1' | 37.7° | 20.9° |
| C3' | C4' | O4' | C1' | 4.2° | 26.5° |
| C3' | C4' | C5' | O5' | 33.5° | 175.7° |
| C3' | C4' | C5' | H5'1 | 153.1° | 55.7° |
| C3' | C4' | C5' | H5'2 | 86.1° | 64.3° |
| C4' | C3' | C2' | H2' | 76.2° | 97.3° |
| C4' | C3' | O3' | HO3' | 180.0° | 180.0° |
| C3' | C2' | O2' | C1' | 112.8° | 112.7° |
| C3' | C2' | O2' | H2' | 125.0° | 123.7° |
| C2' | C3' | C4' | O4' | 22.1° | 2.0° |
| C2' | C3' | C4' | C5' | 96.0° | 121.5° |
| C3' | C2' | C1' | H2' | 114.1° | 118.2° |
| C3' | C2' | C1' | O4' | 40.6° | 37.0° |
| C3' | C2' | C1' | N9 | 156.2° | 155.5° |
| C2' | C3' | C4' | H4' | 137.9° | 117.5° |
| C3' | C2' | C1' | H1' | 80.6° | 81.5° |
| C3' | C2' | O2' | HO2' | 180.0° | 67.3° |
| C2' | C3' | O3' | HO3' | 64.1° | 65.2° |
| O2' | C2' | C1' | H2' | 124.0° | 123.5° |
| O2' | C2' | C1' | O4' | 162.4° | 155.3° |
| O2' | C2' | C1' | N9 | 81.9° | 86.2° |
| O2' | C2' | C1' | H1' | 41.3° | 36.8° |
| O2' | C2' | C3' | H3' | 81.9° | 102.2° |
| O4' | C4' | C5' | H4' | 115.7° | 121.0° |
| C4' | O4' | C1' | C2' | 28.0° | 40.0° |
| C4' | O4' | C1' | N9 | 147.4° | 158.5° |
| O4' | C4' | C5' | O5' | 83.9° | 66.4° |
| O4' | C4' | C5' | H5'1 | 35.7° | 173.6° |
| O4' | C4' | C5' | H5'2 | 156.5° | 53.6° |
| C4' | O4' | C1' | H1' | 90.6° | 78.5° |
| O4' | C4' | C3' | H3' | 141.0° | 116.7° |
| C5' | C4' | O4' | C1' | 128.4° | 146.0° |
| C4' | C5' | O5' | H5'1 | 119.6° | 120.0° |
| C4' | C5' | O5' | H5'2 | 119.6° | 120.0° |
| C4' | C5' | O5' | PA | 157.5° | 180.0° |
| C4' | C5' | H5'1 | H5'2 | 121.3° | 120.0° |
| C5' | C4' | C3' | H3' | 22.9° | 2.8° |
| C2' | C1' | O4' | N9 | 119.5° | 118.5° |
| C2' | C1' | O4' | H1' | 118.6° | 118.5° |
| C2' | C1' | N9 | H1' | 122.2° | 123.0° |
| C2' | C1' | N9 | C4 | 167.2° | 85.0° |
| C2' | C1' | N9 | C8 | 16.2° | 94.9° |
| C1' | C2' | C3' | H3' | 158.5° | 139.6° |
| C1' | C2' | O2' | HO2' | 67.2° | 180.0° |
| O4' | C1' | N9 | H1' | 123.2° | 122.9° |
| O4' | C1' | N9 | C4 | 78.1° | 160.9° |
| O4' | C1' | N9 | C8 | 98.4° | 19.1° |
| C1' | O4' | C4' | H4' | 114.3° | 93.1° |
| O4' | C1' | C2' | H2' | 73.5° | 81.2° |
| C1' | N9 | C4 | N3 | 1.1° | 0.1° |
| C1' | N9 | C4 | C8 | 177.2° | 179.9° |
| C1' | N9 | C4 | C5 | 177.5° | 180.0° |
| C1' | N9 | C8 | N7 | 178.2° | 179.9° |
| C1' | N9 | C8 | H8 | 1.9° | 0.1° |
| N9 | C1' | C2' | H2' | 42.1° | 37.3° |
| N3 | C2 | N1 | H2 | 180.0° | 179.7° |
| C2 | N3 | C4 | N9 | 179.5° | 180.0° |
| C2 | N3 | C4 | C5 | 2.0° | 0.1° |
| N3 | C2 | N1 | C6 | 1.4° | 0.3° |
| C4 | N3 | C2 | N1 | 1.5° | 0.1° |
| N3 | C4 | N9 | C5 | 178.7° | 179.9° |
| N3 | C4 | N9 | C8 | 178.3° | 179.9° |
| N3 | C4 | C5 | C6 | 2.2° | 0.3° |
| N3 | C4 | C5 | N7 | 179.4° | 180.0° |
| C4 | N3 | C2 | H2 | 178.5° | 179.7° |
| C2 | N1 | C6 | C5 | 1.6° | 0.6° |
| C2 | N1 | C6 | N6 | 179.9° | 180.0° |
| C5' | O5' | PA | O3A | 37.4° | 175.0° |
| C5' | O5' | PA | O1A | 159.7° | 55.0° |
| C5' | O5' | PA | O2A | 76.5° | 65.0° |
| O5' | C5' | H5'1 | H5'2 | 121.3° | 120.0° |
| O5' | C5' | C4' | H4' | 160.4° | 54.6° |
| N9 | C4 | C5 | C6 | 179.0° | 179.8° |
| N9 | C4 | C5 | N7 | 0.6° | 0.0° |
| C4 | N9 | C8 | N7 | 1.2° | 0.0° |
| C4 | N9 | C1' | H1' | 45.1° | 38.0° |
| C4 | N9 | C8 | H8 | 178.8° | 180.0° |
| C5 | C4 | N9 | C8 | 0.3° | 0.0° |
| C4 | C5 | C6 | N1 | 2.0° | 0.5° |
| C4 | C5 | C6 | N7 | 177.8° | 179.6° |
| C4 | C5 | N7 | C8 | 1.4° | 0.0° |
| C4 | C5 | C6 | N6 | 179.5° | 180.0° |
| N9 | C8 | N7 | C5 | 1.6° | 0.0° |
| N9 | C8 | N7 | H8 | 180.0° | 180.0° |
| C8 | N9 | C1' | H1' | 138.3° | 142.1° |
| N1 | C6 | C5 | N6 | 178.5° | 179.5° |
| N1 | C6 | C5 | N7 | 179.8° | 179.8° |
| C6 | N1 | C2 | H2 | 178.6° | 180.0° |
| N1 | C6 | N6 | HN61 | 0.0° | 179.5° |
| N1 | C6 | N6 | HN62 | 120.0° | 0.5° |
| O5' | PA | O3A | O1A | 117.6° | 120.0° |
| O5' | PA | O3A | O2A | 117.4° | 120.0° |
| O5' | PA | O1A | O2A | 122.2° | 120.0° |
| O5' | PA | O3A | PB | 89.0° | 165.0° |
| PA | O5' | C5' | H5'1 | 38.0° | 60.0° |
| PA | O5' | C5' | H5'2 | 82.9° | 60.0° |
| O5' | PA | O2A | HOA2 | 120.1° | 60.0° |
| C6 | C5 | N7 | C8 | 179.3° | 179.7° |
| C5 | C6 | N6 | HN61 | 178.5° | 0.0° |
| C5 | C6 | N6 | HN62 | 58.5° | 180.0° |
| N7 | C5 | C6 | N6 | 1.7° | 0.3° |
| C5 | N7 | C8 | H8 | 178.4° | 180.0° |
| C6 | N6 | HN61 | HN62 | 120.0° | 180.0° |
| O3B | PB | O2B | O3A | 121.8° | 120.0° |
| O3B | PB | O2B | O1B | 124.1° | 120.0° |
| O3B | PB | O3A | PA | 43.3° | 45.0° |
| O3B | PB | O3A | O1B | 118.5° | 120.0° |
| O3B | PB | O1B | C01 | 176.3° | 55.0° |
| O3B | PB | O2B | HOB2 | 0.0° | 180.0° |
| O2B | PB | O3A | PA | 167.5° | 75.0° |
| O2B | PB | O3A | O1B | 117.2° | 120.0° |
| O2B | PB | O1B | C01 | 48.9° | 65.0° |
| O3A | PA | O1A | O2A | 120.6° | 120.0° |
| PA | O3A | PB | O1B | 75.3° | 165.0° |
| O3A | PA | O2A | HOA2 | 125.5° | 60.0° |
| O1A | PA | O3A | PB | 28.6° | 45.0° |
| O1A | PA | O2A | HOA2 | 0.0° | 180.0° |
| O2A | PA | O3A | PB | 153.6° | 75.0° |
| O3A | PB | O1B | C01 | 63.8° | 175.0° |
| O3A | PB | O2B | HOB2 | 121.8° | 60.0° |
| PB | O1B | C01 | H1 | 180.0° | 60.0° |
| PB | O1B | C01 | H3 | 60.0° | 60.0° |
| PB | O1B | C01 | H4 | 60.0° | 180.0° |
| O1B | PB | O2B | HOB2 | 124.1° | 60.0° |
| O1B | C01 | H1 | H3 | 120.0° | 120.0° |
| O1B | C01 | H1 | H4 | 120.0° | 120.0° |
| O1B | C01 | H3 | H4 | 120.0° | 120.0° |
| H1 | C01 | H3 | H4 | 120.0° | 120.0° |
| H5'1 | C5' | C4' | H4' | 80.0° | 65.4° |
| H5'2 | C5' | C4' | H4' | 40.9° | 174.5° |
| H4' | C4' | C3' | H3' | 103.3° | 123.9° |
| H1' | C1' | C2' | H2' | 165.3° | 160.3° |
| H2' | C2' | C3' | H3' | 44.6° | 21.4° |
| H2' | C2' | O2' | HO2' | 55.0° | 56.4° |
| H3' | C3' | O3' | HO3' | 56.3° | 57.3° |
