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OGR

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C1N2sing1.47Å1.50Å
OP3C2doub1.22Å1.25Å
N2C2sing1.35Å1.40Å
C2C4'sing1.48Å1.52Å
C4'C3'doub1.40Å1.38ÅAromatic
C4'C5'sing1.40Å1.42ÅAromatic
C14C13sing1.55Å1.56Å
C14C15sing1.55Å1.56Å
C13C12sing1.54Å1.56Å
C3'C2'sing1.37Å1.41ÅAromatic
C5'NAAdoub1.32Å1.37ÅAromatic
C15C11sing1.54Å1.54Å
C2'C1'doub1.39Å1.42ÅAromatic
C12C11sing1.54Å1.53Å
C11N7sing1.47Å1.55Å
NAAC1'sing1.33Å1.37ÅAromatic
C1'N9sing1.39Å1.43Å
N6C16doub1.33Å1.33ÅAromatic
N6CAAsing1.32Å1.39ÅAromatic
N7C16sing1.37Å1.37ÅAromatic
N7C5sing1.39Å1.42ÅAromatic
C18N1sing1.46Å1.47Å
C19N1sing1.46Å1.49Å
N9CAAsing1.38Å1.39Å
N1C6sing1.35Å1.46Å
C16C8sing1.41Å1.46ÅAromatic
CAAN3doub1.33Å1.39ÅAromatic
C6O6doub1.22Å1.24Å
C6C5sing1.47Å1.47Å
C5C9doub1.36Å1.40ÅAromatic
C8C9sing1.41Å1.44ÅAromatic
C8C7doub1.40Å1.41ÅAromatic
N3C7sing1.32Å1.34ÅAromatic
C7H1sing1.08Å1.08Å
C13H2sing1.09Å1.10Å
C13H3sing1.09Å1.10Å
C15H4sing1.09Å1.10Å
C15H5sing1.09Å1.10Å
C1H6sing1.09Å1.10Å
C1H7sing1.09Å1.10Å
C1H8sing1.09Å1.10Å
C11H9sing1.09Å1.10Å
C12H10sing1.09Å1.10Å
C12H11sing1.09Å1.10Å
C14H12sing1.09Å1.10Å
C14H13sing1.09Å1.10Å
C18H14sing1.09Å1.10Å
C18H15sing1.09Å1.10Å
C18H16sing1.09Å1.10Å
C19H17sing1.09Å1.10Å
C19H18sing1.09Å1.10Å
C19H19sing1.09Å1.10Å
C2'H20sing1.08Å1.08Å
C3'H21sing1.08Å1.08Å
C5'H22sing1.08Å1.08Å
C9H23sing1.08Å1.08Å
N2H24sing0.97Å1.00Å
N9H25sing0.97Å1.00Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C1N2C2123.9°120.0°
N2C1H6109.5°109.5°
N2C1H7109.5°109.5°
N2C1H8109.5°109.4°
C1N2H24118.1°120.0°
OP3C2N2115.5°120.0°
OP3C2C4'115.7°120.0°
N2C2C4'128.7°120.0°
C2N2H24118.0°120.0°
C2C4'C3'119.7°120.5°
C2C4'C5'127.2°120.5°
C3'C4'C5'113.1°119.0°
C4'C3'C2'124.9°118.5°
C4'C3'H21117.5°120.8°
C4'C5'NAA123.1°120.6°
C4'C5'H22118.4°119.7°
C13C14C15105.9°102.7°
C14C13C12107.5°104.2°
C14C13H2110.0°110.5°
C14C13H3109.9°110.6°
C13C14H12110.4°110.7°
C13C14H13110.4°110.7°
C14C15C11104.1°104.2°
C14C15H4110.8°110.5°
C14C15H5110.8°110.7°
C15C14H12110.4°110.7°
C15C14H13110.4°110.8°
C13C12C11105.3°106.6°
C12C13H2110.0°110.5°
C12C13H3110.0°110.5°
C13C12H10110.5°110.0°
C13C12H11110.5°110.1°
C3'C2'C1'119.4°119.4°
C3'C2'H20120.3°120.3°
C2'C3'H21117.6°120.8°
C5'NAAC1'123.4°121.6°
NAAC5'H22118.5°119.7°
C15C11C12107.5°106.6°
C15C11N7112.4°110.0°
C11C15H4110.8°110.5°
C11C15H5110.8°110.5°
C15C11H9108.0°110.1°
C2'C1'NAA116.1°121.0°
C2'C1'N9122.6°119.5°
C1'C2'H20120.3°120.4°
C12C11N7112.7°110.0°
C12C11H9108.1°110.1°
C11C12H10110.5°110.0°
C11C12H11110.5°110.1°
C11N7C16121.7°125.5°
C11N7C5124.8°125.5°
N7C11H9107.9°110.0°
NAAC1'N9121.3°119.5°
C1'N9CAA129.2°120.0°
C1'N9H25115.4°120.0°
C16N6CAA119.1°120.5°
N6C16N7131.2°134.0°
N6C16C8123.6°118.7°
N6CAAN9123.8°118.8°
N6CAAN3120.6°122.5°
C16N7C5113.4°108.9°
N7C16C8105.2°107.3°
N7C5C6127.1°125.5°
N7C5C9105.1°109.1°
C18N1C19116.6°120.0°
C18N1C6122.8°120.0°
N1C18H14109.5°109.5°
N1C18H15109.5°109.5°
N1C18H16109.5°109.5°
C19N1C6120.6°120.0°
N1C19H17109.5°109.5°
N1C19H18109.5°109.4°
N1C19H19109.5°109.5°
N9CAAN3115.7°118.8°
CAAN9H25115.4°120.0°
N1C6O6117.6°120.0°
N1C6C5118.4°120.0°
C16C8C9107.1°107.1°
C16C8C7113.4°118.5°
CAAN3C7119.7°121.2°
O6C6C5123.9°120.0°
C6C5C9127.6°125.4°
C5C9C8109.2°107.6°
C5C9H23125.4°126.2°
C9C8C7139.5°134.4°
C8C9H23125.4°126.2°
C8C7N3123.6°118.7°
C8C7H1118.2°120.7°
N3C7H1118.2°120.7°
H2C13H3109.5°110.4°
H4C15H5109.5°110.4°
H6C1H7109.5°109.4°
H6C1H8109.4°109.5°
H7C1H8109.5°109.5°
H10C12H11109.5°110.0°
H12C14H13109.5°110.9°
H14C18H15109.4°109.5°
H14C18H16109.5°109.4°
H15C18H16109.5°109.5°
H17C19H18109.5°109.5°
H17C19H19109.4°109.5°
H18C19H19109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C1N2C2OP30.3°0.0°
C1N2C2H24180.0°180.0°
C1N2C2C4'179.7°180.0°
N2C1H6H7120.0°120.0°
N2C1H6H8120.0°120.0°
N2C1H7H8120.0°120.0°
OP3C2N2C4'179.4°180.0°
OP3C2C4'C3'22.4°0.0°
OP3C2C4'C5'156.9°180.0°
OP3C2N2H24179.7°180.0°
N2C2C4'C3'158.2°180.0°
N2C2C4'C5'22.5°0.0°
C2N2C1H6180.0°60.0°
C2N2C1H760.0°60.0°
C2N2C1H860.0°180.0°
C2C4'C3'C5'179.4°180.0°
C2C4'C3'C2'179.7°180.0°
C2C4'C5'NAA179.3°179.7°
C2C4'C3'H210.3°0.0°
C2C4'C5'H220.7°0.1°
C4'C2N2H240.2°0.0°
C4'C3'C2'H21180.0°180.0°
C3'C4'C5'NAA0.0°0.3°
C4'C3'C2'C1'1.0°0.0°
C4'C3'C2'H20179.0°179.9°
C3'C4'C5'H22180.0°180.0°
C5'C4'C3'C2'0.3°0.0°
C4'C5'NAAH22180.0°179.7°
C4'C5'NAAC1'0.3°0.6°
C5'C4'C3'H21179.7°180.0°
C13C14C15H12119.4°118.3°
C13C14C15H13119.4°118.3°
C14C13C12H2119.7°118.7°
C14C13C12H3119.7°118.8°
C13C14C15C1126.5°38.0°
C14C13C12C117.6°23.6°
C14C13H2H3120.9°122.6°
C13C14C15H492.7°156.6°
C13C14C15H5145.6°80.8°
C14C13C12H10126.9°95.7°
C14C13C12H11111.8°142.9°
C13C14H12H13121.7°123.3°
C15C14C13C1211.8°37.9°
C14C15C11H4119.2°118.7°
C14C15C11H5119.2°118.9°
C14C15C11C1232.1°23.7°
C14C15C11N7156.6°142.9°
C15C14C13H2131.5°80.7°
C15C14C13H3107.9°156.7°
C14C15H4H5122.5°122.7°
C14C15C11H984.4°95.7°
C15C14H12H13121.7°123.4°
C13C12C11C1524.7°0.1°
C13C12C11H10119.3°119.3°
C13C12C11H11119.3°119.3°
C13C12C11N7149.2°119.3°
C12C13H2H3120.9°122.6°
C13C12C11H991.7°119.3°
C13C12H10H11121.9°121.4°
C12C13C14H12131.2°156.2°
C12C13C14H13107.7°80.4°
C3'C2'C1'H20180.0°179.9°
C3'C2'C1'NAA1.2°0.3°
C3'C2'C1'N9179.7°180.0°
C5'NAAC1'C2'1.0°0.6°
C5'NAAC1'N9179.9°179.7°
C15C11C12N7124.4°119.3°
C15C11C12H9116.4°119.4°
C15C11N7H9119.0°121.4°
C15C11N7C1666.1°55.2°
C15C11N7C5111.5°124.8°
C11C15H4H5122.5°122.5°
C15C11C12H10144.1°119.3°
C15C11C12H1194.6°119.3°
C11C15C14H12145.9°156.3°
C11C15C14H1393.0°80.3°
C2'C1'NAAN9179.1°179.7°
C2'C1'N9CAA8.6°174.7°
C1'C2'C3'H21179.0°180.0°
C2'C1'N9H25171.4°5.4°
C12C11N7H9119.3°121.4°
C12C11N7C1655.5°61.9°
C12C11N7C5126.8°118.1°
C11C12C13H2112.1°95.1°
C11C12C13H3127.3°142.4°
C12C11C15H487.1°142.3°
C12C11C15H5151.2°95.2°
C11C12H10H11122.0°121.4°
C11N7C16N61.0°0.0°
C11N7C16C5177.9°180.0°
C11N7C16C8178.6°180.0°
C11N7C5C65.3°0.0°
C11N7C5C9178.7°180.0°
N7C11C15H437.5°98.4°
N7C11C15H584.2°24.0°
N7C11C12H1091.5°121.4°
N7C11C12H1129.8°0.0°
NAAC1'N9CAA172.4°5.0°
NAAC1'C2'H20178.8°179.7°
C1'NAAC5'H22179.6°179.7°
NAAC1'N9H257.6°175.0°
C1'N9CAAN62.2°174.8°
C1'N9CAAH25180.0°179.9°
C1'N9CAAN3177.2°5.3°
N9C1'C2'H200.3°0.0°
N6C16N7C8179.7°180.0°
N6C16N7C5178.9°180.0°
C16N6CAAN9179.8°180.0°
C16N6CAAN30.5°0.1°
N6C16C8C9179.4°180.0°
N6C16C8C70.0°0.1°
CAAN6C16N7180.0°180.0°
N6CAAN9N3179.3°179.9°
CAAN6C16C80.3°0.1°
N6CAAN3C71.6°0.1°
N6CAAN9H25177.8°5.3°
C16N7C5C6176.9°180.0°
C16N7C5C90.9°0.0°
N7C16C8C90.3°0.1°
N7C16C8C7179.7°179.9°
C16N7C11H9174.8°176.7°
N7C5C6N163.2°172.8°
C5N7C16C80.8°0.0°
N7C5C6O6119.3°7.2°
N7C5C6C9175.1°180.0°
N7C5C9C80.7°0.0°
C5N7C11H97.6°3.4°
N7C5C9H23179.3°179.9°
C18N1C19C6178.5°179.8°
C18N1C6O61.4°5.7°
C18N1C6C5179.0°174.3°
N1C18H14H15120.0°120.0°
N1C18H14H16120.0°120.0°
N1C18H15H16120.0°120.1°
C18N1C19H17180.0°95.1°
C18N1C19H1860.0°24.9°
C18N1C19H1960.0°144.9°
C19N1C6O6177.0°174.1°
C19N1C6C50.7°6.0°
C19N1C18H14180.0°89.8°
C19N1C18H1560.0°30.2°
C19N1C18H1660.0°150.3°
N1C19H17H18120.0°120.0°
N1C19H17H19120.0°120.0°
N1C19H18H19120.0°120.0°
N9CAAN3C7179.0°180.0°
N1C6O6C5177.5°180.0°
N1C6C5C9111.8°7.2°
C6N1C18H141.5°90.0°
C6N1C18H15121.5°150.0°
C6N1C18H16118.5°29.9°
C6N1C19H171.5°85.2°
C6N1C19H18118.5°154.8°
C6N1C19H19121.5°34.9°
C16C8C9C50.2°0.0°
C16C8C9C7179.1°179.9°
C16C8C7N31.2°0.1°
C16C8C7H1178.8°180.0°
C16C8C9H23179.8°179.9°
CAAN3C7C82.1°0.1°
CAAN3C7H1178.0°180.0°
N3CAAN9H252.9°174.6°
O6C6C5C965.6°172.7°
C6C5C9C8176.6°180.0°
C6C5C9H233.4°0.1°
C5C9C8H23180.0°179.9°
C5C9C8C7178.9°179.9°
C9C8C7N3179.7°179.9°
C9C8C7H10.3°0.1°
C8C7N3H1180.0°179.9°
C7C8C9H231.1°0.2°
H2C13C12H107.2°145.6°
H2C13C12H11128.6°24.2°
H2C13C14H12109.1°37.5°
H2C13C14H1312.0°160.9°
H3C13C12H10113.4°23.1°
H3C13C12H117.9°98.3°
H3C13C14H1211.5°85.0°
H3C13C14H13132.6°38.4°
H4C15C11H9156.4°22.9°
H4C15C14H1226.8°85.1°
H4C15C14H13147.9°38.4°
H5C15C11H934.7°145.4°
H5C15C14H1294.9°37.5°
H5C15C14H1326.2°160.9°
H6C1H7H8120.0°120.1°
H6C1N2H240.0°120.0°
H7C1N2H24120.0°120.0°
H8C1N2H24120.0°0.0°
H9C11C12H1027.6°0.0°
H9C11C12H11149.0°121.3°
H14C18H15H16120.0°119.9°
H17C19H18H19119.9°120.0°
H20C2'C3'H211.0°0.0°

250835

PDB entries from 2026-03-18

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