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OGA

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C1C2sing1.49Å1.37Å
C1O1doub1.21Å1.22Å
C1O2sing1.35Å1.25Å
C2O2'doub1.21Å1.25Å
C2N1sing1.35Å1.32Å
C4C5sing1.51Å1.51Å
C4N1sing1.46Å1.47Å
C4H4C1sing1.09Å1.11Å
C4H4C2sing1.09Å1.11Å
C5O3sing1.34Å1.22Å
C5O4doub1.21Å1.21Å
O2H2sing0.97Å0.95Å
O3H3sing0.97Å0.95Å
N1H1sing0.97Å1.02Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C2C1O1119.1°120.0°
C2C1O2122.8°120.1°
C1C2O2'123.0°120.0°
C1C2N1116.3°120.0°
O1C1O2118.0°119.9°
C1O2H2122.8°120.1°
O2'C2N1120.7°119.9°
C2N1C4123.4°120.1°
C2N1H1118.3°119.9°
C5C4N1116.4°109.5°
C5C4H4C1109.7°109.4°
C5C4H4C2109.7°109.4°
C4C5O3123.0°120.1°
C4C5O4117.5°120.0°
N1C4H4C1109.7°109.5°
N1C4H4C2109.7°109.5°
C4N1H1118.3°120.0°
H4C1C4H4C2100.5°109.4°
O3C5O4119.5°119.9°
C5O3H3123.1°120.1°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C2C1O1O2179.3°180.0°
C1C2O2'N1178.6°180.0°
C1C2N1C4172.7°180.0°
C2C1O2H2180.0°180.0°
C1C2N1H17.3°0.0°
O1C1C2O2'179.3°180.0°
O1C1C2N12.1°0.0°
O1C1O2H20.7°0.0°
O2C1C2O2'0.1°0.0°
O2C1C2N1178.7°180.0°
O2'C2N1C46.0°0.0°
O2'C2N1H1174.1°180.0°
C2N1C4C5153.6°180.0°
C2N1C4H1180.0°180.0°
C2N1C4H4C128.4°60.0°
C2N1C4H4C281.1°60.0°
C5C4N1H4C1125.3°120.0°
C5C4N1H4C2125.2°120.0°
C5C4H4C1H4C2115.5°119.9°
C4C5O3O4178.4°180.0°
C4C5O3H3180.0°180.0°
C5C4N1H126.4°0.0°
N1C4H4C1H4C2115.5°120.0°
N1C4C5O33.2°180.0°
N1C4C5O4178.4°0.0°
H4C1C4C5O3128.4°59.9°
H4C1C4C5O453.2°120.1°
H4C1C4N1H1151.7°120.0°
H4C2C4C5O3122.1°59.9°
H4C2C4C5O456.3°120.1°
H4C2C4N1H198.8°120.0°
O4C5O3H31.6°0.0°

246704

PDB entries from 2025-12-24

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