OFC
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| C5' | C4' | sing | 1.53Å | 1.52Å | |
| C5' | O5' | sing | 1.43Å | 1.44Å | |
| C4' | O4' | sing | 1.44Å | 1.41Å | |
| C4' | C3' | sing | 1.54Å | 1.52Å | |
| F2' | C2' | sing | 1.40Å | 1.41Å | |
| O4' | C1' | sing | 1.44Å | 1.46Å | |
| OP2 | P | sing | 1.61Å | 1.51Å | |
| O3' | C3' | sing | 1.43Å | 1.42Å | |
| C1' | C2' | sing | 1.55Å | 1.44Å | |
| C1' | N1 | sing | 1.47Å | 1.47Å | |
| O5' | P | sing | 1.61Å | 1.67Å | |
| C3' | C2' | sing | 1.55Å | 1.51Å | |
| P | OP1 | doub | 1.48Å | 1.46Å | |
| N1 | C6 | sing | 1.36Å | 1.37Å | |
| N1 | C2 | sing | 1.35Å | 1.36Å | |
| O2 | C2 | doub | 1.22Å | 1.23Å | |
| C6 | C5 | doub | 1.35Å | 1.37Å | |
| C2 | N3 | sing | 1.33Å | 1.34Å | |
| C5 | C4 | sing | 1.41Å | 1.39Å | |
| N3 | C4 | doub | 1.33Å | 1.38Å | |
| C4 | N4 | sing | 1.38Å | 1.33Å | |
| N4 | H41 | sing | 0.97Å | 1.00Å | |
| N4 | H42 | sing | 0.97Å | 1.00Å | |
| C5 | H5 | sing | 1.08Å | 1.08Å | |
| C6 | H6 | sing | 1.08Å | 1.08Å | |
| C1' | H1' | sing | 1.09Å | 1.10Å | |
| C2' | H2' | sing | 1.09Å | 1.10Å | |
| C3' | H3' | sing | 1.09Å | 1.10Å | |
| O3' | HO3' | sing | 0.97Å | 0.95Å | |
| C4' | H4' | sing | 1.09Å | 1.10Å | |
| C5' | H5' | sing | 1.09Å | 1.10Å | |
| C5' | H5'' | sing | 1.09Å | 1.10Å | |
| OP2 | HOP2 | sing | 0.97Å | 0.95Å | |
| P | OP3 | sing | 1.61Å | 1.59Å | |
| OP3 | HOP3 | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| C4' | C5' | O5' | 104.7° | 109.4° |
| C5' | C4' | O4' | 110.9° | 110.4° |
| C5' | C4' | C3' | 115.9° | 110.4° |
| C5' | C4' | H4' | 108.5° | 110.5° |
| C4' | C5' | H5' | 110.7° | 109.5° |
| C4' | C5' | H5'' | 110.6° | 109.4° |
| C5' | O5' | P | 122.0° | 123.0° |
| O5' | C5' | H5' | 110.7° | 109.5° |
| O5' | C5' | H5'' | 110.7° | 109.5° |
| O4' | C4' | C3' | 102.7° | 104.8° |
| C4' | O4' | C1' | 105.6° | 105.3° |
| O4' | C4' | H4' | 110.1° | 110.4° |
| C4' | C3' | O3' | 110.8° | 110.7° |
| C4' | C3' | C2' | 101.1° | 104.1° |
| C4' | C3' | H3' | 111.8° | 110.5° |
| C3' | C4' | H4' | 108.6° | 110.4° |
| F2' | C2' | C1' | 107.5° | 110.5° |
| F2' | C2' | C3' | 111.8° | 110.6° |
| F2' | C2' | H2' | 113.4° | 110.5° |
| O4' | C1' | C2' | 110.4° | 104.8° |
| O4' | C1' | N1 | 105.9° | 110.4° |
| O4' | C1' | H1' | 108.6° | 110.5° |
| OP2 | P | O5' | 101.6° | 109.4° |
| OP2 | P | OP1 | 125.7° | 109.5° |
| P | OP2 | HOP2 | 109.5° | 114.1° |
| OP2 | P | OP3 | 106.9° | 109.4° |
| O3' | C3' | C2' | 107.3° | 110.5° |
| O3' | C3' | H3' | 113.4° | 110.4° |
| C3' | O3' | HO3' | 109.5° | 114.1° |
| C2' | C1' | N1 | 114.6° | 110.3° |
| C1' | C2' | C3' | 98.4° | 104.0° |
| C2' | C1' | H1' | 108.8° | 110.4° |
| C1' | C2' | H2' | 113.0° | 110.5° |
| C1' | N1 | C6 | 123.6° | 119.8° |
| C1' | N1 | C2 | 114.0° | 119.8° |
| N1 | C1' | H1' | 108.4° | 110.3° |
| O5' | P | OP1 | 107.5° | 109.5° |
| O5' | P | OP3 | 104.8° | 109.5° |
| C3' | C2' | H2' | 111.8° | 110.5° |
| C2' | C3' | H3' | 111.8° | 110.5° |
| OP1 | P | OP3 | 108.4° | 109.5° |
| C6 | N1 | C2 | 122.4° | 120.4° |
| N1 | C6 | C5 | 122.0° | 119.3° |
| N1 | C6 | H6 | 119.0° | 120.4° |
| N1 | C2 | O2 | 123.5° | 119.4° |
| N1 | C2 | N3 | 116.4° | 121.1° |
| O2 | C2 | N3 | 120.1° | 119.5° |
| C6 | C5 | C4 | 115.3° | 119.0° |
| C6 | C5 | H5 | 122.4° | 120.5° |
| C5 | C6 | H6 | 119.0° | 120.3° |
| C2 | N3 | C4 | 122.6° | 120.7° |
| C5 | C4 | N3 | 121.3° | 119.6° |
| C5 | C4 | N4 | 119.2° | 120.2° |
| C4 | C5 | H5 | 122.3° | 120.5° |
| N3 | C4 | N4 | 119.5° | 120.2° |
| C4 | N4 | H41 | 120.0° | 120.0° |
| C4 | N4 | H42 | 120.0° | 120.0° |
| H41 | N4 | H42 | 120.0° | 120.0° |
| H5' | C5' | H5'' | 109.5° | 109.5° |
| P | OP3 | HOP3 | 109.5° | 114.0° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| C4' | C5' | O5' | H5' | 119.2° | 120.0° |
| C4' | C5' | O5' | H5'' | 119.2° | 119.9° |
| C5' | C4' | O4' | C3' | 124.4° | 118.8° |
| C5' | C4' | O4' | H4' | 120.1° | 122.4° |
| C5' | C4' | C3' | H4' | 122.4° | 122.4° |
| C5' | C4' | O4' | C1' | 151.5° | 159.3° |
| C5' | C4' | C3' | O3' | 80.8° | 98.5° |
| C4' | C5' | O5' | P | 173.8° | 180.0° |
| C5' | C4' | C3' | C2' | 165.7° | 142.8° |
| C5' | C4' | C3' | H3' | 46.7° | 24.1° |
| C4' | C5' | H5' | H5'' | 122.2° | 119.9° |
| O5' | C5' | C4' | O4' | 60.0° | 66.5° |
| O5' | C5' | C4' | C3' | 56.5° | 178.1° |
| C5' | O5' | P | OP2 | 44.5° | 65.1° |
| C5' | O5' | P | OP1 | 178.0° | 54.9° |
| O5' | C5' | C4' | H4' | 179.0° | 55.8° |
| O5' | C5' | H5' | H5'' | 122.2° | 120.1° |
| C5' | O5' | P | OP3 | 66.8° | 175.0° |
| O4' | C4' | C3' | H4' | 116.6° | 118.8° |
| O4' | C4' | C3' | O3' | 158.2° | 142.7° |
| C4' | O4' | C1' | C2' | 0.8° | 40.6° |
| C4' | O4' | C1' | N1 | 123.7° | 159.3° |
| O4' | C4' | C3' | C2' | 44.7° | 24.0° |
| C4' | O4' | C1' | H1' | 120.1° | 78.3° |
| O4' | C4' | C3' | H3' | 74.3° | 94.7° |
| O4' | C4' | C5' | H5' | 179.3° | 53.5° |
| O4' | C4' | C5' | H5'' | 59.2° | 173.5° |
| C4' | C3' | C2' | F2' | 69.7° | 118.7° |
| C3' | C4' | O4' | C1' | 27.2° | 40.6° |
| C4' | C3' | O3' | C2' | 109.5° | 114.7° |
| C4' | C3' | O3' | H3' | 126.6° | 122.7° |
| C4' | C3' | C2' | C1' | 43.0° | 0.0° |
| C4' | C3' | C2' | H3' | 119.0° | 118.7° |
| C4' | C3' | C2' | H2' | 161.9° | 118.6° |
| C4' | C3' | O3' | HO3' | 180.0° | 176.1° |
| C3' | C4' | C5' | H5' | 62.7° | 61.8° |
| C3' | C4' | C5' | H5'' | 175.7° | 58.2° |
| F2' | C2' | C1' | O4' | 88.0° | 142.8° |
| F2' | C2' | C3' | O3' | 46.4° | 0.1° |
| F2' | C2' | C1' | C3' | 116.1° | 118.8° |
| F2' | C2' | C1' | H2' | 125.9° | 122.6° |
| F2' | C2' | C1' | N1 | 152.5° | 98.4° |
| F2' | C2' | C3' | H2' | 128.4° | 122.7° |
| F2' | C2' | C1' | H1' | 31.1° | 23.8° |
| F2' | C2' | C3' | H3' | 171.3° | 122.6° |
| O4' | C1' | C2' | N1 | 119.4° | 118.8° |
| O4' | C1' | C2' | H1' | 119.1° | 119.0° |
| O4' | C1' | N1 | H1' | 116.3° | 122.4° |
| O4' | C1' | C2' | C3' | 28.0° | 24.0° |
| O4' | C1' | N1 | C6 | 13.8° | 4.7° |
| O4' | C1' | N1 | C2 | 164.0° | 175.1° |
| O4' | C1' | C2' | H2' | 146.1° | 94.6° |
| C1' | O4' | C4' | H4' | 88.4° | 78.3° |
| OP2 | P | O5' | OP1 | 133.6° | 120.0° |
| OP2 | P | O5' | OP3 | 111.2° | 119.9° |
| OP2 | P | OP1 | OP3 | 128.1° | 120.0° |
| OP2 | P | OP3 | HOP3 | 138.1° | 60.0° |
| O3' | C3' | C2' | C1' | 159.1° | 118.8° |
| O3' | C3' | C2' | H3' | 124.9° | 122.5° |
| O3' | C3' | C2' | H2' | 82.0° | 122.6° |
| O3' | C3' | C4' | H4' | 41.6° | 23.9° |
| C2' | C1' | N1 | H1' | 121.7° | 122.2° |
| C1' | C2' | C3' | H2' | 118.9° | 118.7° |
| C2' | C1' | N1 | C6 | 108.2° | 120.0° |
| C2' | C1' | N1 | C2 | 74.1° | 59.7° |
| C1' | C2' | C3' | H3' | 76.1° | 118.7° |
| N1 | C1' | C2' | C3' | 91.4° | 142.8° |
| C1' | N1 | C6 | C2 | 177.6° | 179.8° |
| C1' | N1 | C2 | O2 | 0.4° | 0.3° |
| C1' | N1 | C6 | C5 | 177.5° | 179.7° |
| C1' | N1 | C2 | N3 | 177.1° | 179.7° |
| C1' | N1 | C6 | H6 | 2.5° | 0.2° |
| N1 | C1' | C2' | H2' | 26.7° | 24.2° |
| O5' | P | OP1 | OP3 | 112.8° | 120.0° |
| P | O5' | C5' | H5' | 66.9° | 60.0° |
| P | O5' | C5' | H5'' | 54.6° | 60.1° |
| O5' | P | OP2 | HOP2 | 121.7° | 60.0° |
| O5' | P | OP3 | HOP3 | 114.6° | 180.0° |
| C3' | C2' | C1' | H1' | 147.1° | 95.0° |
| C2' | C3' | O3' | HO3' | 70.5° | 61.4° |
| C2' | C3' | C4' | H4' | 71.9° | 94.8° |
| OP1 | P | OP2 | HOP2 | 0.0° | 180.0° |
| OP1 | P | OP3 | HOP3 | 0.0° | 60.0° |
| C6 | N1 | C2 | O2 | 178.2° | 180.0° |
| N1 | C6 | C5 | H6 | 180.0° | 179.9° |
| C6 | N1 | C2 | N3 | 0.7° | 0.1° |
| N1 | C6 | C5 | C4 | 1.4° | 0.0° |
| N1 | C6 | C5 | H5 | 178.6° | 180.0° |
| C6 | N1 | C1' | H1' | 130.1° | 117.7° |
| N1 | C2 | O2 | N3 | 177.4° | 180.0° |
| C2 | N1 | C6 | C5 | 0.0° | 0.1° |
| N1 | C2 | N3 | C4 | 0.2° | 0.1° |
| C2 | N1 | C6 | H6 | 180.0° | 180.0° |
| C2 | N1 | C1' | H1' | 47.6° | 62.5° |
| O2 | C2 | N3 | C4 | 177.4° | 180.0° |
| C6 | C5 | C4 | H5 | 180.0° | 180.0° |
| C6 | C5 | C4 | N3 | 2.3° | 0.0° |
| C6 | C5 | C4 | N4 | 179.6° | 180.0° |
| C2 | N3 | C4 | C5 | 1.8° | 0.1° |
| C2 | N3 | C4 | N4 | 179.8° | 180.0° |
| C5 | C4 | N3 | N4 | 178.1° | 179.9° |
| C5 | C4 | N4 | H41 | 178.1° | 179.9° |
| C5 | C4 | N4 | H42 | 1.9° | 0.0° |
| C4 | C5 | C6 | H6 | 178.6° | 180.0° |
| N3 | C4 | N4 | H41 | 0.0° | 0.0° |
| N3 | C4 | N4 | H42 | 180.0° | 180.0° |
| N3 | C4 | C5 | H5 | 177.7° | 180.0° |
| C4 | N4 | H41 | H42 | 180.0° | 180.0° |
| N4 | C4 | C5 | H5 | 0.4° | 0.1° |
| H5 | C5 | C6 | H6 | 1.4° | 0.1° |
| H1' | C1' | C2' | H2' | 94.8° | 146.4° |
| H2' | C2' | C3' | H3' | 42.8° | 0.0° |
| H3' | C3' | O3' | HO3' | 53.4° | 61.2° |
| H3' | C3' | C4' | H4' | 169.1° | 146.5° |
| H4' | C4' | C5' | H5' | 59.7° | 175.8° |
| H4' | C4' | C5' | H5'' | 61.8° | 64.2° |
| HOP2 | OP2 | P | OP3 | 128.7° | 60.0° |
