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SummaryGeometryRelated PDB entries

ODW

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
O09C08sing1.43Å1.41Å
C05N06sing1.49Å1.36Å
C05C04sing1.55Å1.59Å
C05C07sing1.54Å1.49Å
N06C02sing1.49Å1.30Å
C08C07sing1.53Å1.49Å
C04C03sing1.54Å1.59Å
C07C10sing1.53Å1.64Å
C02C03sing1.55Å1.60Å
C02O01sing1.43Å1.43Å
C02C12sing1.54Å1.52Å
C10C12sing1.53Å1.61Å
C10O11sing1.43Å1.30Å
C12O13sing1.43Å1.40Å
C10H1sing1.09Å1.10Å
C03H2sing1.09Å1.10Å
C03H3sing1.09Å1.10Å
C04H4sing1.09Å1.10Å
C04H5sing1.09Å1.10Å
C05H6sing1.09Å1.10Å
C07H7sing1.09Å1.10Å
C08H8sing1.09Å1.10Å
C08H9sing1.09Å1.10Å
C12H10sing1.09Å1.10Å
N06H11sing1.01Å1.00Å
O01H13sing0.97Å0.95Å
O09H14sing0.97Å0.95Å
O11H15sing0.97Å0.95Å
O13H16sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
O09C08C07110.8°109.5°
O09C08H8109.1°109.5°
O09C08H9109.1°109.5°
C08O09H14109.5°114.0°
N06C05C04103.0°103.9°
N06C05C07111.3°107.3°
C05N06C02110.7°103.5°
N06C05H6112.0°112.2°
C05N06H11109.2°111.0°
C04C05C07111.7°108.4°
C05C04C03100.2°104.8°
C05C04H4111.8°109.6°
C05C04H5111.7°111.3°
C04C05H6108.7°111.8°
C05C07C08113.6°109.6°
C05C07C10111.0°108.9°
C07C05H6110.0°112.7°
C05C07H7108.6°109.6°
N06C02C03102.5°104.2°
N06C02O01111.3°112.8°
N06C02C12114.1°107.2°
C02N06H11109.2°110.6°
C08C07C10108.0°109.6°
C08C07H7108.6°109.6°
C07C08H8109.1°109.5°
C07C08H9109.2°109.5°
C04C03C02101.7°104.8°
C04C03H2111.4°110.4°
C04C03H3111.4°110.5°
C03C04H4111.7°110.4°
C03C04H5111.7°110.3°
C07C10C12109.0°109.7°
C07C10O11111.4°109.4°
C07C10H1107.8°109.4°
C10C07H7106.8°109.5°
C03C02O01109.7°112.2°
C03C02C12110.3°107.8°
C02C03H2111.4°110.3°
C02C03H3111.3°110.4°
O01C02C12108.8°112.1°
C02O01H13109.5°114.0°
C02C12C10110.4°108.9°
C02C12O13113.2°109.5°
C02C12H10108.5°109.5°
C12C10O11107.7°109.5°
C10C12O13106.9°109.6°
C12C10H1108.1°109.4°
C10C12H10107.4°109.6°
O11C10H1112.8°109.5°
C10O11H15109.5°114.0°
O13C12H10110.2°109.7°
C12O13H16109.5°114.0°
H2C03H3109.5°110.3°
H4C04H5109.4°110.3°
H8C08H9109.5°109.4°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
O09C08C07C0589.5°175.0°
O09C08C07H8120.2°120.0°
O09C08C07H9120.2°120.0°
O09C08C07C10146.9°65.5°
O09C08C07H731.4°54.6°
O09C08H8H9119.4°120.0°
N06C05C04C07119.5°113.9°
N06C05C04H6118.9°121.3°
N06C05C07H6124.7°124.0°
C05N06C02H11120.2°118.9°
N06C05C07C08176.2°176.1°
N06C05C04C0323.9°26.1°
N06C05C07C1054.2°64.0°
C05N06C02C0348.1°41.6°
C05N06C02O01165.3°163.6°
C05N06C02C1271.1°72.5°
N06C05C04H494.6°144.6°
N06C05C04H5142.4°93.2°
N06C05C07H762.9°55.7°
C04C05C07H6120.8°124.3°
C04C05N06C0247.7°42.1°
C04C05C07C0861.7°72.2°
C05C04C03H4118.5°117.9°
C05C04C03H5118.5°119.9°
C04C05C07C1060.2°47.6°
C05C04C03C021.1°1.0°
C05C04C03H2117.7°117.9°
C05C04C03H3119.8°119.9°
C05C04H4H5124.3°122.8°
C04C05C07H7177.3°167.4°
C04C05N06H11167.9°160.8°
C07C05N06C0272.1°72.6°
C05C07C08C10123.6°119.5°
C05C07C08H7121.0°120.4°
C07C05C04C0395.6°87.8°
C05C07C10H7118.2°119.8°
C05C07C10C1237.1°54.0°
C05C07C10O1181.6°66.1°
C05C07C10H1154.3°174.1°
C07C05C04H4145.9°30.7°
C07C05C04H522.8°152.9°
C05C07C08H830.7°65.0°
C05C07C08H9150.3°55.0°
C07C05N06H1148.1°46.1°
N06C02C03C0427.0°24.5°
N06C02C03O01118.3°122.4°
N06C02C03C12121.8°113.7°
N06C02O01C12126.6°121.1°
N06C02C12C1052.1°64.1°
N06C02C12O13171.9°176.1°
N06C02C03H291.8°143.3°
N06C02C03H3145.7°94.5°
C02N06C05H6164.3°163.2°
N06C02C12H1065.4°55.8°
N06C02O01H13180.0°58.1°
C08C07C10H7116.7°120.3°
C08C07C10C12162.3°173.9°
C08C07C10O1143.6°53.8°
C08C07C10H180.6°66.0°
C08C07C05H659.1°52.1°
C07C08H8H9119.4°119.9°
C07C08O09H14180.0°180.0°
C04C03C02H2118.8°118.8°
C04C03C02H3118.7°119.0°
C04C03C02O01145.3°146.9°
C04C03C02C1294.8°89.2°
C04C03H2H3123.6°122.4°
C03C04H4H5124.3°122.2°
C03C04C05H6142.8°147.4°
C07C10C12C0234.4°54.0°
C07C10C12O11121.0°120.0°
C07C10C12H1116.9°120.0°
C07C10O11H1121.3°119.8°
C07C10C12O13158.0°173.8°
C10C07C05H6178.9°172.0°
C10C07C08H892.9°54.5°
C10C07C08H926.7°174.4°
C07C10C12H1083.7°65.8°
C07C10O11H15180.0°179.7°
C03C02O01C12120.7°121.5°
C03C02C12C1062.6°47.6°
C03C02C12O1357.2°72.2°
C02C03H2H3123.6°122.2°
C02C03C04H4119.6°118.9°
C02C03C04H5117.4°119.0°
C03C02C12H10179.9°167.5°
C03C02N06H11168.3°160.5°
C03C02O01H1367.2°59.3°
O01C02C12C10177.0°171.6°
O01C02C12O1363.1°51.8°
O01C02C03H226.6°94.3°
O01C02C03H395.9°27.9°
O01C02C12H1059.5°68.5°
O01C02N06H1174.5°77.5°
C02C12C10O13123.6°119.8°
C02C12C10H10118.2°119.8°
C02C12C10O1186.5°66.0°
C02C12O13H10121.7°120.3°
C02C12C10H1151.3°174.0°
C12C02C03H2146.4°29.7°
C12C02C03H323.9°151.9°
C12C02N06H1149.1°46.3°
C12C02O01H1353.5°179.2°
C02C12O13H16180.0°179.4°
C12C10O11H1119.2°119.9°
C10C12O13H10116.5°120.4°
C12C10C07H781.1°65.8°
C12C10O11H1560.5°60.0°
C10C12O13H1658.2°60.1°
O11C10C12O1337.0°53.7°
O11C10C07H7160.2°174.1°
O11C10C12H10155.3°174.2°
O13C12C10H185.1°66.2°
H1C10C07H736.1°54.2°
H1C10C12H1033.1°54.2°
H1C10O11H1558.7°59.9°
H2C03C04H40.8°0.1°
H2C03C04H5123.8°122.2°
H3C03C04H4121.7°122.2°
H3C03C04H51.3°0.1°
H4C04C05H624.3°94.1°
H5C04C05H698.7°28.1°
H6C05C07H761.9°68.3°
H6C05N06H1175.5°78.2°
H7C07C08H8151.7°174.7°
H7C07C08H988.8°65.4°
H8C08O09H1459.8°60.0°
H9C08O09H1459.7°59.9°
H10C12O13H1658.3°60.3°

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PDB entries from 2026-01-21

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