OCY
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| N | CA | sing | 1.47Å | 1.45Å | |
| N | H | sing | 1.01Å | 1.02Å | |
| N | H2 | sing | 1.01Å | 1.02Å | |
| CA | CB | sing | 1.53Å | 1.52Å | |
| CA | C | sing | 1.51Å | 1.52Å | |
| CA | HA | sing | 1.09Å | 1.11Å | |
| CB | SG | sing | 1.81Å | 1.75Å | |
| CB | HB2 | sing | 1.09Å | 1.11Å | |
| CB | HB3 | sing | 1.09Å | 1.11Å | |
| SG | CD | sing | 1.81Å | 1.80Å | |
| CD | CE | sing | 1.53Å | 1.53Å | |
| CD | HD2 | sing | 1.09Å | 1.12Å | |
| CD | HD3 | sing | 1.09Å | 1.12Å | |
| CE | OZ | sing | 1.43Å | 1.42Å | |
| CE | HE2 | sing | 1.09Å | 1.11Å | |
| CE | HE3 | sing | 1.09Å | 1.11Å | |
| OZ | HZ | sing | 0.97Å | 0.95Å | |
| C | O | doub | 1.21Å | 1.22Å | |
| C | OXT | sing | 1.34Å | 1.33Å | |
| OXT | HXT | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| CA | N | H | 111.8° | 106.7° |
| CA | N | H2 | 111.4° | 106.7° |
| N | CA | CB | 111.8° | 109.5° |
| N | CA | C | 110.4° | 109.5° |
| N | CA | HA | 107.2° | 109.4° |
| H | N | H2 | 111.4° | 106.7° |
| CB | CA | C | 109.2° | 109.6° |
| CB | CA | HA | 108.4° | 109.4° |
| CA | CB | SG | 122.2° | 109.5° |
| CA | CB | HB2 | 107.7° | 109.4° |
| CA | CB | HB3 | 107.7° | 109.5° |
| C | CA | HA | 109.8° | 109.4° |
| CA | C | O | 121.5° | 120.0° |
| CA | C | OXT | 116.3° | 120.1° |
| SG | CB | HB2 | 107.7° | 109.4° |
| SG | CB | HB3 | 107.7° | 109.5° |
| CB | SG | CD | 114.6° | 100.1° |
| HB2 | CB | HB3 | 102.2° | 109.4° |
| SG | CD | CE | 109.8° | 109.5° |
| SG | CD | HD2 | 112.0° | 109.5° |
| SG | CD | HD3 | 112.0° | 109.5° |
| CE | CD | HD2 | 112.1° | 109.5° |
| CE | CD | HD3 | 112.1° | 109.5° |
| CD | CE | OZ | 109.8° | 109.5° |
| CD | CE | HE2 | 112.1° | 109.5° |
| CD | CE | HE3 | 112.0° | 109.4° |
| HD2 | CD | HD3 | 98.3° | 109.4° |
| OZ | CE | HE2 | 112.1° | 109.4° |
| OZ | CE | HE3 | 112.1° | 109.4° |
| CE | OZ | HZ | 109.8° | 106.9° |
| HE2 | CE | HE3 | 98.4° | 109.5° |
| O | C | OXT | 122.2° | 119.9° |
| C | OXT | HXT | 116.3° | 120.1° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| CA | N | H | H2 | 125.3° | 113.7° |
| N | CA | CB | C | 122.5° | 120.1° |
| N | CA | CB | HA | 117.9° | 119.9° |
| N | CA | C | HA | 118.0° | 119.9° |
| N | CA | CB | SG | 67.2° | 59.9° |
| N | CA | CB | HB2 | 167.6° | 60.1° |
| N | CA | CB | HB3 | 58.1° | 179.9° |
| N | CA | C | O | 164.5° | 30.1° |
| N | CA | C | OXT | 17.4° | 150.0° |
| H | N | CA | CB | 179.9° | 53.7° |
| H | N | CA | C | 58.1° | 173.8° |
| H | N | CA | HA | 61.4° | 66.3° |
| H2 | N | CA | CB | 54.7° | 60.1° |
| H2 | N | CA | C | 176.5° | 60.1° |
| H2 | N | CA | HA | 63.9° | 180.0° |
| CB | CA | C | HA | 118.8° | 120.0° |
| CA | CB | SG | HB2 | 125.2° | 120.0° |
| CA | CB | SG | HB3 | 125.3° | 120.1° |
| CA | CB | HB2 | HB3 | 113.3° | 120.0° |
| CA | CB | SG | CD | 56.1° | 180.0° |
| CB | CA | C | O | 72.2° | 90.0° |
| CB | CA | C | OXT | 105.8° | 89.9° |
| C | CA | CB | SG | 55.3° | 180.0° |
| C | CA | CB | HB2 | 69.9° | 60.0° |
| C | CA | CB | HB3 | 179.5° | 59.8° |
| CA | C | O | OXT | 177.9° | 179.9° |
| CA | C | OXT | HXT | 180.0° | 180.0° |
| HA | CA | CB | SG | 174.9° | 60.0° |
| HA | CA | CB | HB2 | 49.7° | 180.0° |
| HA | CA | CB | HB3 | 59.9° | 60.1° |
| HA | CA | C | O | 46.6° | 150.0° |
| HA | CA | C | OXT | 135.4° | 30.1° |
| SG | CB | HB2 | HB3 | 113.3° | 120.0° |
| CB | SG | CD | CE | 44.6° | 180.0° |
| CB | SG | CD | HD2 | 80.8° | 60.0° |
| CB | SG | CD | HD3 | 169.8° | 59.9° |
| HB2 | CB | SG | CD | 178.6° | 60.0° |
| HB3 | CB | SG | CD | 69.1° | 59.9° |
| SG | CD | CE | HD2 | 125.3° | 120.0° |
| SG | CD | CE | HD3 | 125.3° | 120.1° |
| SG | CD | HD2 | HD3 | 117.9° | 120.0° |
| SG | CD | CE | OZ | 102.2° | 180.0° |
| SG | CD | CE | HE2 | 23.0° | 60.0° |
| SG | CD | CE | HE3 | 132.5° | 60.0° |
| CE | CD | HD2 | HD3 | 118.0° | 119.9° |
| CD | CE | OZ | HE2 | 125.2° | 120.0° |
| CD | CE | OZ | HE3 | 125.2° | 120.0° |
| CD | CE | HE2 | HE3 | 118.0° | 120.0° |
| CD | CE | OZ | HZ | 180.0° | 180.0° |
| HD2 | CD | CE | OZ | 132.5° | 59.9° |
| HD2 | CD | CE | HE2 | 102.2° | 179.9° |
| HD2 | CD | CE | HE3 | 7.2° | 60.1° |
| HD3 | CD | CE | OZ | 23.0° | 59.9° |
| HD3 | CD | CE | HE2 | 148.3° | 60.1° |
| HD3 | CD | CE | HE3 | 102.2° | 179.9° |
| OZ | CE | HE2 | HE3 | 118.1° | 120.0° |
| HE2 | CE | OZ | HZ | 54.8° | 60.0° |
| HE3 | CE | OZ | HZ | 54.8° | 60.0° |
| O | C | OXT | HXT | 1.9° | 0.1° |
