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OAD

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
PAO1Adoub1.48Å1.52Å
PAO2Asing1.61Å1.57Å
PAO5'sing1.61Å1.62Å
PAO3Asing1.61Å1.59Å
O2AHOA2sing0.97Å0.95Å
O5'C5'sing1.43Å1.35Å
C5'C4'sing1.53Å1.49Å
C5'H5'1sing1.09Å1.12Å
C5'H5'2sing1.09Å1.11Å
C4'O4'sing1.44Å1.31Å
C4'C3'sing1.54Å1.45Å
C4'H'4sing1.09Å1.11Å
O4'C1'sing1.44Å1.34Å
C3'O3'sing1.43Å1.39Å
C3'C2'sing1.55Å1.49Å
C3'H'3sing1.09Å1.12Å
O3'HO'3sing0.97Å0.95Å
C2'O2'sing1.43Å1.38Å
C2'C1'sing1.55Å1.46Å
C2'H'2sing1.09Å1.12Å
O2'HO'2sing0.97Å0.95Å
C1'N9sing1.46Å1.39Å
C1'H'1sing1.09Å1.11Å
N9C8sing1.36Å1.44ÅAromatic
N9C4sing1.37Å1.35ÅAromatic
C8N7doub1.30Å1.33ÅAromatic
C8H8sing1.08Å1.10Å
N7C5sing1.35Å1.30ÅAromatic
C5C6doub1.40Å1.47ÅAromatic
C5C4sing1.40Å1.42ÅAromatic
C6N6sing1.38Å1.38Å
C6N1sing1.33Å1.46ÅAromatic
N6H61sing0.97Å1.02Å
N6H62sing0.97Å1.02Å
N1C2doub1.32Å1.45ÅAromatic
C2N3sing1.32Å1.42ÅAromatic
C2H2sing1.08Å1.10Å
N3C4doub1.33Å1.42ÅAromatic
O3APBsing1.61Å1.60Å
PBO1Bdoub1.48Å1.56Å
PBO2Bsing1.61Å1.56Å
PBO5Dsing1.61Å1.63Å
O2BHOB2sing0.97Å0.95Å
O2DC2Dsing1.45Å1.40Å
O2DC6Dsing1.34Å1.39Å
O5DC5Dsing1.43Å1.33Å
C5DC4Dsing1.53Å1.50Å
C5DH5R1sing1.09Å1.11Å
C5DH5R2sing1.09Å1.12Å
C4DO4Dsing1.43Å1.35Å
C4DC3Dsing1.54Å1.53Å
C4DHR'4sing1.09Å1.11Å
O4DC1Dsing1.44Å1.28Å
C3DO3Dsing1.43Å1.32Å
C3DC2Dsing1.55Å1.48Å
C3DHR'3sing1.09Å1.12Å
O3DHOR3sing0.97Å0.95Å
C2DC1Dsing1.55Å1.36Å
C2DHR'2sing1.09Å1.11Å
C1DO1Dsing1.43Å1.40Å
C1DHR'1sing1.09Å1.11Å
O1DHOR1sing0.97Å0.95Å
C6DO6Ddoub1.21Å1.34Å
C6DC7Dsing1.51Å1.52Å
C7DH7R1sing1.09Å1.12Å
C7DH7R2sing1.09Å1.11Å
C7DH7R3sing1.09Å1.11Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
O1APAO2A107.8°109.5°
O1APAO5'112.8°109.5°
O1APAO3A109.9°109.5°
O2APAO5'107.3°109.5°
O2APAO3A111.7°109.5°
PAO2AHOA2107.7°114.0°
O5'PAO3A107.3°109.5°
PAO5'C5'120.4°123.0°
PAO3APB121.3°134.0°
O5'C5'C4'109.5°109.5°
O5'C5'H5'1112.2°109.5°
O5'C5'H5'2112.2°109.5°
C4'C5'H5'1112.2°109.5°
C4'C5'H5'2112.2°109.4°
C5'C4'O4'107.8°109.9°
C5'C4'C3'115.5°109.9°
C5'C4'H'4105.6°109.8°
H5'1C5'H5'298.2°109.5°
O4'C4'C3'106.1°107.3°
O4'C4'H'4115.0°109.9°
C4'O4'C1'112.6°107.0°
C3'C4'H'4107.3°110.0°
C4'C3'O3'104.8°110.5°
C4'C3'C2'106.4°104.2°
C4'C3'H'3117.1°110.5°
O4'C1'C2'106.5°103.5°
O4'C1'N9105.1°110.7°
O4'C1'H'1116.2°110.6°
O3'C3'C2'116.8°110.5°
O3'C3'H'3106.9°110.4°
C3'O3'HO'3104.8°114.0°
C2'C3'H'3105.3°110.6°
C3'C2'O2'122.2°110.9°
C3'C2'C1'100.8°102.1°
C3'C2'H'2109.6°110.9°
O2'C2'C1'115.6°110.9°
O2'C2'H'292.4°110.8°
C2'O2'HO'2122.2°114.0°
C1'C2'H'2117.1°110.9°
C2'C1'N9115.0°110.6°
C2'C1'H'1106.5°110.6°
N9C1'H'1107.9°110.7°
C1'N9C8136.5°126.2°
C1'N9C4123.9°126.3°
C8N9C499.6°107.5°
N9C8N7114.0°109.9°
N9C8H8126.6°125.0°
N9C4C5111.5°106.0°
N9C4N3125.9°134.9°
N7C8H8119.3°125.0°
C8N7C5106.4°109.5°
N7C5C6132.4°134.7°
N7C5C4108.5°107.1°
C6C5C4119.1°118.2°
C5C6N6122.1°120.8°
C5C6N1117.1°118.4°
C5C4N3122.7°119.1°
N6C6N1120.9°120.8°
C6N6H61107.7°120.0°
C6N6H62122.1°120.0°
C6N1C2122.7°121.2°
H61N6H62107.7°120.0°
N1C2N3117.8°122.4°
N1C2H2122.0°118.8°
N3C2H2120.2°118.8°
C2N3C4120.6°120.7°
O3APBO1B114.0°109.5°
O3APBO2B116.8°109.5°
O3APBO5D101.6°109.5°
O1BPBO2B100.8°109.5°
O1BPBO5D112.6°109.5°
O2BPBO5D111.7°109.4°
PBO2BHOB2116.8°114.0°
PBO5DC5D120.2°123.0°
C2DO2DC6D126.0°117.0°
O2DC2DC3D122.2°111.1°
O2DC2DC1D117.4°111.1°
O2DC2DHR'290.5°111.0°
O2DC6DO6D126.7°120.0°
O2DC6DC7D116.9°120.0°
O5DC5DC4D114.9°109.5°
O5DC5DH5R1110.2°109.5°
O5DC5DH5R2110.2°109.5°
C4DC5DH5R1110.2°109.5°
C4DC5DH5R2110.2°109.4°
C5DC4DO4D116.9°109.9°
C5DC4DC3D117.3°109.9°
C5DC4DHR'495.9°109.8°
H5R1C5DH5R2100.0°109.5°
O4DC4DC3D102.7°107.6°
O4DC4DHR'4112.5°109.8°
C4DO4DC1D113.6°110.0°
C3DC4DHR'4111.9°109.9°
C4DC3DO3D109.6°110.8°
C4DC3DC2D103.5°102.3°
C4DC3DHR'3113.4°110.8°
O4DC1DC2D112.7°105.1°
O4DC1DO1D101.2°110.3°
O4DC1DHR'1114.8°110.3°
O3DC3DC2D110.1°110.9°
O3DC3DHR'3107.2°110.8°
C3DO3DHOR3109.6°114.0°
C2DC3DHR'3113.0°111.0°
C3DC2DC1D102.9°100.9°
C3DC2DHR'2108.8°111.1°
C1DC2DHR'2114.9°111.1°
C2DC1DO1D114.9°110.3°
C2DC1DHR'1101.1°110.3°
O1DC1DHR'1112.7°110.4°
C1DO1DHOR1101.3°114.0°
O6DC6DC7D116.4°120.0°
C6DC7DH7R1109.6°109.4°
C6DC7DH7R2116.9°109.5°
C6DC7DH7R3109.5°109.5°
H7R1C7DH7R2109.5°109.5°
H7R1C7DH7R3100.6°109.5°
H7R2C7DH7R3109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O1APAO2AO5'121.7°120.0°
O1APAO2AO3A120.9°120.0°
O1APAO5'O3A121.2°120.0°
O1APAO2AHOA2180.0°180.0°
O1APAO5'C5'61.2°55.0°
O1APAO3APB157.0°40.0°
O2APAO5'O3A120.3°120.0°
O2APAO5'C5'179.8°65.0°
O2APAO3APB37.4°80.0°
O5'PAO2AHOA258.3°60.0°
PAO5'C5'C4'179.7°180.0°
PAO5'C5'H5'155.1°60.0°
PAO5'C5'H5'254.4°60.0°
O5'PAO3APB80.0°160.0°
O3APAO2AHOA259.1°60.0°
O3APAO5'C5'60.0°175.0°
PAO3APBO1B38.6°45.0°
PAO3APBO2B155.5°75.0°
PAO3APBO5D82.8°165.0°
O5'C5'C4'H5'1125.3°120.0°
O5'C5'C4'H5'2125.2°120.0°
O5'C5'H5'1H5'2118.1°120.0°
O5'C5'C4'O4'179.5°66.4°
O5'C5'C4'C3'61.2°175.7°
O5'C5'C4'H'457.1°54.5°
C4'C5'H5'1H5'2118.2°119.9°
C5'C4'O4'C3'124.2°119.5°
C5'C4'O4'H'4117.4°120.9°
C5'C4'C3'H'4117.3°121.1°
C5'C4'O4'C1'141.3°145.9°
C5'C4'C3'O3'117.2°119.8°
C5'C4'C3'C2'118.5°121.5°
C5'C4'C3'H'31.1°2.7°
H5'1C5'C4'O4'54.2°53.6°
H5'1C5'C4'C3'64.1°64.3°
H5'1C5'C4'H'4177.6°174.6°
H5'2C5'C4'O4'55.3°173.6°
H5'2C5'C4'C3'173.6°55.7°
H5'2C5'C4'H'468.2°65.5°
O4'C4'C3'H'4123.4°119.5°
O4'C4'C3'O3'123.5°120.7°
O4'C4'C3'C2'0.8°2.0°
O4'C4'C3'H'3118.2°116.8°
C4'O4'C1'C2'28.5°40.0°
C4'O4'C1'N9150.9°158.5°
C4'O4'C1'H'189.9°78.4°
C3'C4'O4'C1'17.1°26.5°
C4'C3'O3'C2'117.5°114.8°
C4'C3'O3'H'3125.0°122.5°
C4'C3'C2'H'3125.0°118.7°
C4'C3'O3'HO'3180.0°180.0°
C4'C3'C2'O2'145.7°139.1°
C4'C3'C2'C1'16.0°20.9°
C4'C3'C2'H'2108.1°97.4°
H'4C4'O4'C1'101.2°93.1°
H'4C4'C3'O3'0.1°1.2°
H'4C4'C3'C2'124.2°117.5°
H'4C4'C3'H'3118.4°123.7°
O4'C1'C2'C3'25.8°37.0°
O4'C1'C2'O2'159.6°155.2°
O4'C1'C2'N9115.9°118.6°
O4'C1'C2'H'1124.6°118.4°
O4'C1'C2'H'293.0°81.2°
O4'C1'N9H'1124.6°123.0°
O4'C1'N9C888.2°23.5°
O4'C1'N9C491.7°156.7°
O3'C3'C2'H'3118.4°122.6°
O3'C3'C2'O2'29.2°20.4°
O3'C3'C2'C1'100.6°97.8°
O3'C3'C2'H'2135.3°143.9°
C2'C3'O3'HO'362.5°65.2°
C3'C2'O2'C1'123.1°112.7°
C3'C2'O2'H'2115.1°123.6°
C3'C2'C1'H'2118.8°118.2°
C3'C2'O2'HO'2180.0°61.5°
C3'C2'C1'N9141.7°155.6°
C3'C2'C1'H'198.8°81.4°
H'3C3'O3'HO'355.0°57.5°
H'3C3'C2'O2'89.3°102.2°
H'3C3'C2'C1'141.0°139.6°
H'3C3'C2'H'216.9°21.3°
O2'C2'C1'H'2107.4°123.6°
O2'C2'C1'N984.4°86.2°
O2'C2'C1'H'135.0°36.8°
C1'C2'O2'HO'256.9°174.2°
C2'C1'N9H'1118.7°122.9°
C2'C1'N9C828.5°90.6°
C2'C1'N9C4151.6°89.2°
H'2C2'O2'HO'264.9°62.2°
H'2C2'C1'N922.9°37.3°
H'2C2'C1'H'1142.4°160.3°
C1'N9C8C4179.9°179.8°
C1'N9C8N7180.0°180.0°
C1'N9C8H80.0°0.1°
C1'N9C4C5180.0°179.9°
C1'N9C4N30.0°0.7°
H'1C1'N9C8147.2°146.5°
H'1C1'N9C432.9°33.7°
N9C8N7H8180.0°180.0°
N9C8N7C50.0°0.0°
C8N9C4C50.1°0.3°
C8N9C4N3180.0°179.5°
C4N9C8N70.0°0.2°
C4N9C8H8179.9°179.8°
N9C4C5N70.1°0.3°
N9C4C5C6179.9°179.9°
N9C4C5N3180.0°179.3°
N9C4N3C2180.0°179.6°
C8N7C5C6179.9°180.0°
C8N7C5C40.0°0.2°
H8C8N7C5180.0°180.0°
N7C5C6C4180.0°179.7°
N7C5C6N60.1°0.0°
N7C5C6N1179.9°180.0°
N7C5C4N3180.0°179.7°
C5C6N6N1180.0°179.9°
C5C6N6H6154.7°0.1°
C5C6N6H62180.0°180.0°
C5C6N1C20.1°0.0°
C6C5C4N30.1°0.5°
C4C5C6N6179.9°179.8°
C4C5C6N10.1°0.3°
C5C4N3C20.0°0.6°
C6N6H61H62133.5°180.0°
N6C6N1C2180.0°180.0°
N1C6N6H61125.3°180.0°
N1C6N6H620.0°0.0°
C6N1C2N30.1°0.0°
C6N1C2H2179.9°180.0°
N1C2N3H2180.0°179.9°
N1C2N3C40.1°0.3°
H2C2N3C4179.8°179.7°
O3APBO1BO2B125.9°120.0°
O3APBO1BO5D115.0°120.0°
O3APBO2BO5D116.3°120.0°
O3APBO2BHOB2180.0°60.0°
O3APBO5DC5D179.9°175.0°
O1BPBO2BO5D119.8°120.0°
O1BPBO2BHOB256.0°180.0°
O1BPBO5DC5D57.8°55.0°
O2BPBO5DC5D54.8°65.0°
O5DPBO2BHOB263.7°60.0°
PBO5DC5DC4D139.1°180.0°
PBO5DC5DH5R195.7°60.0°
PBO5DC5DH5R213.8°60.0°
O2DC2DC3DC4D115.0°83.8°
O2DC2DC1DO4D115.7°81.5°
O2DC2DC3DO3D2.1°34.4°
O2DC2DC3DC1D134.6°117.9°
O2DC2DC3DHR'2103.1°124.1°
O2DC2DC3DHR'3121.9°157.9°
O2DC2DC1DHR'2104.6°124.2°
O2DC2DC1DO1D0.5°37.4°
O2DC2DC1DHR'1121.2°159.6°
C2DO2DC6DO6D72.2°0.0°
C2DO2DC6DC7D108.1°180.0°
C6DO2DC2DC3D130.4°150.0°
C6DO2DC2DC1D101.0°98.4°
C6DO2DC2DHR'217.6°25.8°
O2DC6DO6DC7D179.7°180.0°
O2DC6DC7DH7R154.7°0.0°
O2DC6DC7DH7R2180.0°120.0°
O2DC6DC7DH7R354.8°120.0°
O5DC5DC4DH5R1125.2°120.0°
O5DC5DC4DH5R2125.3°120.0°
O5DC5DH5R1H5R2116.1°120.0°
O5DC5DC4DO4D83.0°66.4°
O5DC5DC4DC3D39.6°175.4°
O5DC5DC4DHR'4158.1°54.4°
C4DC5DH5R1H5R2116.1°120.0°
C5DC4DO4DC3D129.9°119.6°
C5DC4DO4DHR'4109.6°120.9°
C5DC4DC3DHR'4109.5°120.9°
C5DC4DO4DC1D129.8°117.8°
C5DC4DC3DO3D100.6°100.9°
C5DC4DC3DC2D141.9°140.9°
C5DC4DC3DHR'319.2°22.5°
H5R1C5DC4DO4D42.2°53.6°
H5R1C5DC4DC3D164.9°64.6°
H5R1C5DC4DHR'476.7°174.4°
H5R2C5DC4DO4D151.8°173.5°
H5R2C5DC4DC3D85.6°55.4°
H5R2C5DC4DHR'432.8°65.6°
O4DC4DC3DHR'4120.9°119.5°
O4DC4DC3DO3D129.7°139.5°
O4DC4DC3DC2D12.3°21.3°
O4DC4DC3DHR'3110.5°97.1°
C4DO4DC1DC2D14.4°24.5°
C4DO4DC1DO1D137.6°143.4°
C4DO4DC1DHR'1100.7°94.5°
C3DC4DO4DC1D0.1°1.8°
C4DC3DO3DC2D113.2°112.8°
C4DC3DO3DHR'3123.5°123.5°
C4DC3DC2DHR'3123.1°118.3°
C4DC3DO3DHOR3180.0°180.0°
C4DC3DC2DC1D19.6°34.1°
C4DC3DC2DHR'2141.9°152.1°
HR'4C4DO4DC1D120.6°121.3°
HR'4C4DC3DO3D8.9°20.0°
HR'4C4DC3DC2D108.6°98.2°
HR'4C4DC3DHR'3128.6°143.5°
O4DC1DC2DC3D21.5°36.5°
O4DC1DC2DO1D115.3°118.9°
O4DC1DC2DHR'1123.1°118.9°
O4DC1DC2DHR'2139.7°154.4°
O4DC1DO1DHR'1123.1°122.1°
O4DC1DO1DHOR1180.0°61.4°
O3DC3DC2DHR'3119.8°123.5°
O3DC3DC2DC1D136.7°152.3°
O3DC3DC2DHR'2101.0°89.7°
C2DC3DO3DHOR366.8°67.1°
C3DC2DC1DHR'2118.1°117.9°
C3DC2DC1DO1D136.8°155.4°
C3DC2DC1DHR'1101.6°82.4°
HR'3C3DO3DHOR356.5°56.6°
HR'3C3DC2DC1D103.5°84.1°
HR'3C3DC2DHR'218.8°33.8°
C2DC1DO1DHR'1115.1°122.2°
C2DC1DO1DHOR158.2°177.1°
HR'2C2DC1DO1D105.1°86.7°
HR'2C2DC1DHR'116.6°35.5°
HR'1C1DO1DHOR156.9°60.7°
O6DC6DC7DH7R1125.6°180.0°
O6DC6DC7DH7R20.3°60.1°
O6DC6DC7DH7R3124.9°60.0°
C6DC7DH7R1H7R2129.4°120.0°
C6DC7DH7R1H7R3115.3°120.0°
C6DC7DH7R2H7R3125.2°120.0°
H7R1C7DH7R2H7R3109.5°120.0°

219140

PDB entries from 2024-05-01

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