English 日本語简体中文繁體中文 한국어

✖

Menu

RCSB PDB PDBe BMRB Adv. Search Search help

Summary Geometry Related PDB entries

OAA

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
O1	C1	doub	1.22Å	1.25Å
O2	C1	sing	1.22Å	1.26Å
O4	C4	doub	1.21Å	1.24Å
O5	C4	sing	1.35Å	1.22Å
O5	HO5	sing	0.97Å	0.95Å
O3	C3	doub	1.21Å	1.21Å
C1	C2	sing	1.51Å	1.50Å
C2	C3	sing	1.51Å	1.51Å
C2	H21	sing	1.09Å	1.12Å
C2	H22	sing	1.09Å	1.11Å
C3	C4	sing	1.49Å	1.50Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
O1	C1	O2	126.1°	120.0°
O1	C1	C2	116.4°	120.0°
O2	C1	C2	117.2°	120.0°
O4	C4	O5	124.2°	120.0°
O4	C4	C3	116.4°	120.0°
C4	O5	HO5	124.2°	120.0°
O5	C4	C3	119.4°	120.0°
O3	C3	C2	125.4°	120.0°
O3	C3	C4	123.4°	120.0°
C1	C2	C3	116.1°	109.5°
C1	C2	H21	109.8°	109.5°
C1	C2	H22	109.8°	109.5°
C3	C2	H21	109.8°	109.5°
C3	C2	H22	109.8°	109.5°
C2	C3	C4	111.2°	120.0°
H21	C2	H22	100.3°	109.4°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O1	C1	O2	C2	174.0°	180.0°
O1	C1	C2	C3	3.3°	0.0°
O1	C1	C2	H21	122.0°	120.1°
O1	C1	C2	H22	128.6°	120.1°
O2	C1	C2	C3	171.3°	180.0°
O2	C1	C2	H21	63.4°	59.9°
O2	C1	C2	H22	46.0°	59.9°
O4	C4	O5	C3	177.2°	180.0°
O4	C4	O5	HO5	180.0°	0.0°
O4	C4	C3	O3	5.7°	180.0°
O4	C4	C3	C2	176.6°	0.0°
O5	C4	C3	O3	176.9°	0.0°
O5	C4	C3	C2	0.8°	180.0°
HO5	O5	C4	C3	2.8°	180.0°
O3	C3	C2	C1	79.5°	0.0°
O3	C3	C2	C4	177.6°	180.0°
O3	C3	C2	H21	155.2°	120.0°
O3	C3	C2	H22	45.7°	120.0°
C1	C2	C3	H21	125.3°	120.0°
C1	C2	C3	H22	125.3°	120.0°
C1	C2	H21	H22	115.6°	119.9°
C1	C2	C3	C4	98.1°	180.0°
C3	C2	H21	H22	115.6°	120.0°
H21	C2	C3	C4	27.2°	60.0°
H22	C2	C3	C4	136.6°	60.0°

246704

PDB entries from 2025-12-24

PDB statistics

PDBj update info

Contact PDBj

numon