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SummaryGeometryRelated PDB entries

O9Y

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
C24C25doub1.38Å1.39ÅAromatic
C24C23sing1.38Å1.39ÅAromatic
C25C26sing1.38Å1.38ÅAromatic
C23C22doub1.38Å1.38ÅAromatic
C26C21doub1.38Å1.39ÅAromatic
C22C21sing1.38Å1.39ÅAromatic
C01C02sing1.51Å1.52Å
C21S18sing1.76Å1.79Å
F04C03sing1.35Å1.34Å
C02C03doub1.38Å1.38ÅAromatic
C02C08sing1.38Å1.39ÅAromatic
O19S18doub1.42Å1.43Å
C03C05sing1.40Å1.40ÅAromatic
S18O20doub1.42Å1.43Å
S18N17sing1.66Å1.65Å
C08C07doub1.39Å1.39ÅAromatic
N16N17sing1.40Å1.40Å
N16C14sing1.35Å1.43Å
C05C14sing1.48Å1.52Å
C05C06doub1.39Å1.39ÅAromatic
C14O15doub1.22Å1.21Å
C07C06sing1.39Å1.39ÅAromatic
C07N09sing1.40Å1.42Å
N10N09sing1.29Å1.34ÅAromatic
N10C11doub1.31Å1.34ÅAromatic
N09N13sing1.29Å1.32ÅAromatic
C11C12sing1.40Å1.39ÅAromatic
N13C12doub1.31Å1.35ÅAromatic
C22H1sing1.08Å1.08Å
C24H2sing1.08Å1.08Å
C26H3sing1.08Å1.08Å
C01H4sing1.09Å1.10Å
C01H5sing1.09Å1.10Å
C01H6sing1.09Å1.10Å
C06H7sing1.08Å1.08Å
C08H8sing1.08Å1.08Å
C11H9sing1.08Å1.08Å
C12H10sing1.08Å1.08Å
C23H11sing1.08Å1.08Å
C25H12sing1.08Å1.08Å
N16H13sing0.97Å1.00Å
N17H14sing0.97Å1.00Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
C25C24C23120.5°120.0°
C24C25C26120.3°120.0°
C25C24H2119.7°120.0°
C24C25H12119.9°120.0°
C24C23C22119.4°120.0°
C23C24H2119.8°120.0°
C24C23H11120.3°120.0°
C25C26C21119.2°120.0°
C25C26H3120.4°120.0°
C26C25H12119.8°120.0°
C23C22C21120.0°120.1°
C23C22H1120.0°120.0°
C22C23H11120.3°120.0°
C26C21C22120.5°120.0°
C26C21S18119.1°120.0°
C21C26H3120.4°120.0°
C22C21S18120.4°120.1°
C21C22H1120.0°120.0°
C01C02C03118.3°119.9°
C01C02C08121.4°119.9°
C02C01H4109.5°109.5°
C02C01H5109.5°109.4°
C02C01H6109.4°109.4°
C21S18O19105.2°106.5°
C21S18O20110.9°106.3°
C21S18N17113.2°107.2°
F04C03C02117.5°120.1°
F04C03C05121.8°120.0°
C03C02C08120.4°120.2°
C02C03C05120.7°119.9°
C02C08C07118.9°120.3°
C02C08H8120.6°119.9°
O19S18O20103.0°123.1°
O19S18N17113.0°106.4°
C03C05C14121.2°120.1°
C03C05C06119.2°119.7°
O20S18N17110.9°106.4°
S18N17N16122.1°120.0°
S18N17H14106.2°120.0°
C08C07C06121.3°120.0°
C08C07N09118.0°120.0°
C07C08H8120.5°119.8°
N17N16C14124.5°120.0°
N17N16H13117.8°120.0°
N16N17H14106.2°120.0°
N16C14C05118.9°120.0°
N16C14O15120.7°120.0°
C14N16H13117.8°120.0°
C14C05C06119.5°120.1°
C05C14O15120.3°120.0°
C05C06C07119.6°119.8°
C05C06H7120.2°120.1°
C06C07N09120.7°119.9°
C07C06H7120.2°120.1°
C07N09N10124.2°124.6°
C07N09N13124.7°124.6°
N09N10C11107.1°108.7°
N10N09N13111.1°110.8°
N10C11C12107.2°105.9°
N10C11H9126.4°127.0°
N09N13C12107.0°108.7°
C11C12N13107.6°105.9°
C12C11H9126.4°127.1°
C11C12H10126.2°127.1°
N13C12H10126.2°127.0°
H4C01H5109.5°109.5°
H4C01H6109.5°109.5°
H5C01H6109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
C25C24C23H2180.0°179.7°
C24C25C26H12180.0°179.7°
C25C24C23C220.7°0.3°
C24C25C26C211.0°0.0°
C24C25C26H3179.0°179.9°
C25C24C23H11179.3°180.0°
C23C24C25C261.0°0.3°
C24C23C22H11180.0°179.7°
C24C23C22C210.6°0.0°
C24C23C22H1179.5°180.0°
C23C24C25H12179.0°180.0°
C25C26C21H3180.0°179.9°
C25C26C21C220.8°0.3°
C25C26C21S18180.0°180.0°
C26C25C24H2179.0°180.0°
C23C22C21C260.6°0.3°
C23C22C21H1180.0°180.0°
C23C22C21S18179.8°180.0°
C22C23C24H2179.3°180.0°
C26C21C22S18179.2°179.7°
C26C21S18O1963.2°23.3°
C26C21S18O20173.8°156.1°
C26C21S18N1760.7°90.3°
C26C21C22H1179.4°179.7°
C21C26C25H12179.0°179.7°
C22C21S18O19116.0°156.5°
C22C21S18O205.4°23.6°
C22C21S18N17120.1°89.9°
C22C21C26H3179.2°179.8°
C21C22C23H11179.4°179.7°
C01C02C03F040.9°0.0°
C01C02C03C08179.5°179.8°
C01C02C03C05179.0°180.0°
C01C02C08C07179.8°179.7°
C02C01H4H5120.0°120.0°
C02C01H4H6120.0°120.0°
C02C01H5H6120.0°119.9°
C01C02C08H80.2°0.0°
C21S18O19O20116.2°122.9°
C21S18O19N17124.0°114.1°
C21S18O20N17126.7°114.1°
C21S18N17N1667.7°60.1°
S18C21C22H10.2°0.1°
S18C21C26H30.0°0.0°
C21S18N17H14170.5°120.0°
F04C03C02C05178.1°180.0°
F04C03C02C08178.6°179.8°
F04C03C05C143.4°0.0°
F04C03C05C06180.0°180.0°
C03C02C08C070.7°0.5°
C02C03C05C14178.6°180.0°
C02C03C05C062.0°0.0°
C03C02C01H489.7°90.0°
C03C02C01H5150.3°150.0°
C03C02C01H630.3°30.0°
C03C02C08H8179.2°179.8°
C08C02C03C050.5°0.2°
C02C08C07H8180.0°179.7°
C02C08C07C060.5°0.5°
C02C08C07N09179.5°179.8°
C08C02C01H489.7°90.2°
C08C02C01H530.3°29.8°
C08C02C01H6150.3°149.8°
O19S18O20N17121.2°123.0°
O19S18N17N1651.8°53.6°
O19S18N17H1469.9°126.4°
C03C05C14N1641.2°180.0°
C03C05C14C06176.6°179.9°
C03C05C14O15142.2°0.0°
C03C05C06C072.1°0.0°
C03C05C06H7177.9°180.0°
O20S18N17N16166.9°173.5°
O20S18N17H1445.1°6.5°
S18N17N16H14121.7°180.0°
S18N17N16C14104.5°125.0°
S18N17N16H1375.5°55.0°
C08C07C06C050.9°0.2°
C08C07C06N09180.0°179.7°
C08C07N09N1034.4°0.2°
C08C07N09N13144.5°179.8°
C08C07C06H7179.1°179.7°
N17N16C14H13180.0°180.0°
N17N16C14C05177.9°180.0°
N17N16C14O151.3°0.0°
N16C14C05O15176.6°180.0°
N16C14C05C06135.5°0.1°
C14N16N17H1417.2°55.0°
C14C05C06C07178.8°180.0°
C14C05C06H71.2°0.1°
C05C14N16H132.1°0.0°
C06C05C14O1541.2°180.0°
C05C06C07H7180.0°180.0°
C05C06C07N09179.1°180.0°
O15C14N16H13178.7°180.0°
C06C07N09N10145.6°179.5°
C06C07N09N1335.4°0.1°
C06C07C08H8179.4°179.7°
C07N09N10N13179.0°179.6°
C07N09N10C11179.9°179.9°
C07N09N13C12179.7°180.0°
N09C07C06H70.9°0.0°
N09C07C08H80.5°0.0°
N09N10C11C120.7°0.0°
N10N09N13C120.7°0.4°
N09N10C11H9179.3°179.8°
C11N10N09N130.9°0.2°
N10C11C12H9180.0°179.8°
N10C11C12N130.3°0.2°
N10C11C12H10179.7°179.8°
N09N13C12C110.2°0.4°
N09N13C12H10179.8°179.6°
C11C12N13H10180.0°180.0°
N13C12C11H9179.7°180.0°
H1C22C23H110.5°0.4°
H2C24C23H110.7°0.4°
H2C24C25H121.0°0.3°
H3C26C25H121.0°0.2°
H4C01H5H6120.0°120.0°
H9C11C12H100.4°0.0°
H13N16N17H14162.7°125.0°

249697

PDB entries from 2026-02-25

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