Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

O9D

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C22C21doub1.38Å1.38ÅAromatic
C22C23sing1.38Å1.38ÅAromatic
C21C20sing1.38Å1.38ÅAromatic
C23C24doub1.38Å1.39ÅAromatic
C20C19doub1.38Å1.40ÅAromatic
C24C19sing1.38Å1.37ÅAromatic
C19S16sing1.76Å1.82Å
C07C06sing1.51Å1.48Å
F09C08sing1.35Å1.38Å
O18S16doub1.42Å1.41Å
S16O17doub1.42Å1.48Å
S16N15sing1.66Å1.68Å
C06C08doub1.38Å1.42ÅAromatic
C06C05sing1.38Å1.41ÅAromatic
C08C10sing1.40Å1.39ÅAromatic
N14N15sing1.40Å1.39Å
N14C12sing1.35Å1.45Å
C05C04doub1.39Å1.40ÅAromatic
C10C12sing1.48Å1.53Å
C10C11doub1.40Å1.38ÅAromatic
C12O13doub1.22Å1.14Å
C04C11sing1.38Å1.43ÅAromatic
C04O03sing1.36Å1.49Å
C02O03sing1.43Å1.41Å
C02C01sing1.53Å1.44Å
C20H1sing1.08Å1.08Å
C21H2sing1.08Å1.08Å
C22H3sing1.08Å1.08Å
C24H4sing1.08Å1.08Å
C01H5sing1.09Å1.10Å
C01H6sing1.09Å1.10Å
C01H7sing1.09Å1.10Å
C02H8sing1.09Å1.10Å
C02H9sing1.09Å1.10Å
C05H10sing1.08Å1.08Å
C07H11sing1.09Å1.10Å
C07H12sing1.09Å1.10Å
C07H13sing1.09Å1.10Å
C11H14sing1.08Å1.08Å
C23H15sing1.08Å1.08Å
N14H16sing0.97Å1.00Å
N15H17sing0.97Å1.00Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C21C22C23119.0°120.0°
C22C21C20121.1°120.0°
C22C21H2119.5°120.0°
C21C22H3120.5°120.0°
C22C23C24120.9°120.0°
C23C22H3120.5°120.0°
C22C23H15119.6°120.0°
C21C20C19119.0°120.1°
C21C20H1120.5°120.0°
C20C21H2119.4°120.1°
C23C24C19119.6°120.0°
C23C24H4120.2°120.0°
C24C23H15119.6°120.0°
C20C19C24120.4°120.0°
C20C19S16120.4°120.0°
C19C20H1120.5°120.0°
C24C19S16119.2°120.0°
C19C24H4120.2°120.0°
C19S16O18112.5°106.4°
C19S16O17111.1°106.4°
C19S16N15109.4°107.2°
C07C06C08120.1°119.9°
C07C06C05120.2°119.9°
C06C07H11109.5°109.4°
C06C07H12109.4°109.5°
C06C07H13109.5°109.5°
F09C08C06119.8°120.1°
F09C08C10120.2°120.1°
O18S16O17101.1°123.1°
O18S16N15111.3°106.4°
O17S16N15111.2°106.4°
S16N15N14119.1°120.0°
S16N15H17107.0°120.0°
C08C06C05119.7°120.2°
C06C08C10120.1°119.9°
C06C05C04120.2°120.2°
C06C05H10119.9°119.9°
C08C10C12121.4°120.1°
C08C10C11120.2°119.8°
N15N14C12124.2°120.0°
N15N14H16117.9°120.0°
N14N15H17107.0°120.0°
N14C12C10119.8°120.0°
N14C12O13120.8°120.0°
C12N14H16117.9°120.0°
C05C04C11119.2°120.1°
C05C04O03123.0°119.9°
C04C05H10119.9°119.9°
C12C10C11118.5°120.1°
C10C12O13119.4°120.0°
C10C11C04120.7°119.8°
C10C11H14119.7°120.1°
C11C04O03117.9°120.0°
C04C11H14119.7°120.1°
C04O03C02116.3°117.0°
O03C02C01109.5°109.5°
O03C02H8109.4°109.5°
O03C02H9109.5°109.5°
C02C01H5109.5°109.5°
C02C01H6109.5°109.5°
C02C01H7109.5°109.5°
C01C02H8109.5°109.5°
C01C02H9109.5°109.5°
H5C01H6109.4°109.4°
H5C01H7109.5°109.5°
H6C01H7109.5°109.5°
H8C02H9109.5°109.4°
H11C07H12109.5°109.5°
H11C07H13109.4°109.5°
H12C07H13109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C21C22C23H3180.0°180.0°
C22C21C20H2180.0°179.9°
C21C22C23C240.1°0.3°
C22C21C20C190.1°0.0°
C22C21C20H1179.9°179.7°
C21C22C23H15179.9°180.0°
C23C22C21C200.1°0.0°
C22C23C24H15180.0°179.7°
C22C23C24C190.2°0.5°
C23C22C21H2179.9°180.0°
C22C23C24H4179.8°179.9°
C21C20C19H1180.0°179.7°
C21C20C19C240.1°0.3°
C21C20C19S16179.6°179.7°
C20C21C22H3179.9°180.0°
C23C24C19C200.2°0.5°
C23C24C19H4180.0°179.4°
C23C24C19S16179.6°179.5°
C24C23C22H3179.9°179.7°
C20C19C24S16179.4°180.0°
C20C19S16O1862.5°23.5°
C20C19S16O17175.1°156.4°
C20C19S16N1561.7°90.0°
C19C20C21H2179.9°180.0°
C20C19C24H4179.8°179.9°
C24C19S16O18118.1°156.4°
C24C19S16O175.5°23.5°
C24C19S16N15117.7°90.0°
C24C19C20H1179.9°180.0°
C19C24C23H15179.9°179.8°
C19S16O18O17118.6°123.0°
C19S16O18N15123.1°114.1°
C19S16O17N15122.1°114.1°
C19S16N15N1483.3°60.0°
S16C19C20H10.5°0.0°
S16C19C24H40.4°0.0°
C19S16N15H17155.3°120.0°
C07C06C08F090.4°0.0°
C07C06C08C05179.9°180.0°
C07C06C08C10179.9°180.0°
C07C06C05C04179.8°179.8°
C07C06C05H100.2°0.1°
C06C07H11H12120.0°120.0°
C06C07H11H13120.0°120.0°
C06C07H12H13120.0°120.0°
F09C08C06C10179.5°179.9°
F09C08C06C05179.7°179.9°
F09C08C10C120.5°0.0°
F09C08C10C11179.8°179.8°
O18S16O17N15118.3°122.9°
O18S16N15N1441.6°173.6°
O18S16N15H1779.7°6.5°
O17S16N15N14153.6°53.6°
O17S16N15H1732.2°126.4°
S16N15N14H17121.4°180.0°
S16N15N14C12102.0°125.0°
S16N15N14H1678.0°55.0°
C08C06C05C040.1°0.3°
C06C08C10C12179.9°180.0°
C06C08C10C110.4°0.3°
C08C06C05H10179.9°179.9°
C08C06C07H1190.0°90.0°
C08C06C07H12150.0°150.0°
C08C06C07H1329.9°30.0°
C05C06C08C100.3°0.0°
C06C05C04H10180.0°179.7°
C06C05C04C110.2°0.3°
C06C05C04O03179.9°179.8°
C05C06C07H1190.1°90.0°
C05C06C07H1229.9°29.9°
C05C06C07H13149.9°149.9°
C08C10C12N1432.5°179.7°
C08C10C12C11179.7°179.7°
C08C10C12O13147.7°0.2°
C08C10C11C040.2°0.3°
C08C10C11H14179.8°179.8°
N15N14C12H16180.0°180.0°
N15N14C12C10179.8°180.0°
N15N14C12O130.3°0.0°
N14C12C10O13179.9°180.0°
N14C12C10C11147.3°0.0°
C12N14N15H1719.4°55.0°
C05C04C11C100.1°0.0°
C05C04C11O03179.7°180.0°
C05C04O03C0228.7°180.0°
C05C04C11H14179.9°180.0°
C12C10C11C04179.9°180.0°
C12C10C11H140.1°0.0°
C10C12N14H160.2°0.0°
C11C10C12O1332.6°180.0°
C10C11C04H14180.0°179.9°
C10C11C04O03179.8°180.0°
O13C12N14H16179.7°180.0°
C11C04O03C02151.7°0.0°
C11C04C05H10179.8°179.9°
C04O03C02C01162.1°180.0°
C04O03C02H842.1°60.0°
C04O03C02H977.9°59.9°
O03C04C05H100.1°0.1°
O03C04C11H140.2°0.0°
O03C02C01H8120.0°120.0°
O03C02C01H9120.0°120.0°
O03C02C01H5180.0°179.9°
O03C02C01H660.0°60.0°
O03C02C01H760.0°60.0°
O03C02H8H9120.0°120.0°
C02C01H5H6120.0°120.0°
C02C01H5H7120.0°120.0°
C02C01H6H7120.0°120.0°
C01C02H8H9120.0°120.0°
H1C20C21H20.1°0.3°
H2C21C22H30.1°0.0°
H3C22C23H150.1°0.0°
H4C24C23H150.1°0.3°
H5C01H6H7120.0°120.0°
H5C01C02H860.0°59.9°
H5C01C02H960.0°60.0°
H6C01C02H8180.0°60.0°
H6C01C02H960.0°180.0°
H7C01C02H860.0°180.0°
H7C01C02H9180.0°60.0°
H11C07H12H13120.0°120.1°
H16N14N15H17160.6°125.0°

220113

PDB entries from 2024-05-22

PDB statisticsPDBj update infoContact PDBjnumon