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Summary Geometry Related PDB entries

O8Y

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
C2	C1	sing	1.53Å	0.00Å
C2	C3	sing	1.53Å	0.00Å
C5	C6	sing	1.51Å	0.00Å
C5	C4	sing	1.53Å	0.00Å
O1	C6	doub	1.21Å	0.00Å
C3	C4	sing	1.53Å	0.00Å
C4	H1	sing	1.09Å	0.00Å
C4	H2	sing	1.09Å	0.00Å
C5	H3	sing	1.09Å	0.00Å
C5	H4	sing	1.09Å	0.00Å
C6	H5	sing	1.08Å	0.00Å
C3	H6	sing	1.09Å	0.00Å
C3	H7	sing	1.09Å	0.00Å
C1	H8	sing	1.09Å	0.00Å
C1	H9	sing	1.09Å	0.00Å
C1	H10	sing	1.09Å	0.00Å
C2	H11	sing	1.09Å	0.00Å
C2	H12	sing	1.09Å	0.00Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
C1	C2	C3	90.0°	109.5°
C2	C1	H8	90.0°	109.4°
C2	C1	H9	90.0°	109.5°
C2	C1	H10	90.0°	109.4°
C1	C2	H11	90.0°	109.5°
C1	C2	H12	90.0°	109.5°
C2	C3	C4	90.0°	109.5°
C2	C3	H6	90.0°	109.5°
C2	C3	H7	90.0°	109.5°
C3	C2	H11	90.0°	109.4°
C3	C2	H12	90.0°	109.5°
C6	C5	C4	90.0°	109.4°
C5	C6	O1	90.0°	120.0°
C6	C5	H3	90.0°	109.5°
C6	C5	H4	90.0°	109.5°
C5	C6	H5	90.0°	120.1°
C5	C4	C3	90.0°	109.4°
C5	C4	H1	90.0°	109.5°
C5	C4	H2	90.0°	109.5°
C4	C5	H3	90.0°	109.5°
C4	C5	H4	90.0°	109.5°
O1	C6	H5	90.0°	119.9°
C3	C4	H1	90.0°	109.4°
C3	C4	H2	90.0°	109.5°
C4	C3	H6	90.0°	109.4°
C4	C3	H7	90.0°	109.5°
H1	C4	H2	90.0°	109.5°
H3	C5	H4	90.0°	109.5°
H6	C3	H7	90.0°	109.5°
H8	C1	H9	90.0°	109.5°
H8	C1	H10	90.0°	109.5°
H9	C1	H10	90.0°	109.5°
H11	C2	H12	90.0°	109.4°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
C1	C2	C3	H11	90.0°	120.0°
C1	C2	C3	H12	90.0°	120.1°
C1	C2	C3	C4	90.0°	180.0°
C1	C2	C3	H6	90.0°	60.0°
C1	C2	C3	H7	90.0°	60.0°
C2	C1	H8	H9	90.0°	120.0°
C2	C1	H8	H10	90.0°	119.9°
C2	C1	H9	H10	90.0°	120.0°
C1	C2	H11	H12	90.0°	120.1°
C2	C3	C4	C5	90.0°	180.0°
C2	C3	C4	H6	90.0°	120.0°
C2	C3	C4	H7	90.0°	120.0°
C2	C3	C4	H1	90.0°	60.0°
C2	C3	C4	H2	90.0°	60.0°
C2	C3	H6	H7	90.0°	120.0°
C3	C2	C1	H8	90.0°	60.0°
C3	C2	C1	H9	90.0°	60.0°
C3	C2	C1	H10	90.0°	180.0°
C3	C2	H11	H12	90.0°	119.9°
C6	C5	C4	H3	90.0°	120.0°
C6	C5	C4	H4	90.0°	120.0°
C5	C6	O1	H5	90.0°	180.0°
C6	C5	C4	C3	90.0°	180.0°
C6	C5	C4	H1	90.0°	60.0°
C6	C5	C4	H2	90.0°	60.0°
C6	C5	H3	H4	90.0°	120.0°
C4	C5	C6	O1	90.0°	125.0°
C5	C4	C3	H1	90.0°	120.0°
C5	C4	C3	H2	90.0°	120.0°
C5	C4	H1	H2	90.0°	120.0°
C4	C5	H3	H4	90.0°	120.0°
C4	C5	C6	H5	90.0°	55.0°
C5	C4	C3	H6	90.0°	60.0°
C5	C4	C3	H7	90.0°	60.0°
O1	C6	C5	H3	90.0°	5.0°
O1	C6	C5	H4	90.0°	115.0°
C3	C4	H1	H2	90.0°	120.0°
C3	C4	C5	H3	90.0°	60.0°
C3	C4	C5	H4	90.0°	60.0°
C4	C3	H6	H7	90.0°	120.0°
C4	C3	C2	H11	90.0°	60.0°
C4	C3	C2	H12	90.0°	59.9°
H1	C4	C5	H3	90.0°	60.0°
H1	C4	C5	H4	90.0°	180.0°
H1	C4	C3	H6	90.0°	180.0°
H1	C4	C3	H7	90.0°	60.0°
H2	C4	C5	H3	90.0°	180.0°
H2	C4	C5	H4	90.0°	60.0°
H2	C4	C3	H6	90.0°	60.0°
H2	C4	C3	H7	90.0°	180.0°
H3	C5	C6	H5	90.0°	175.0°
H4	C5	C6	H5	90.0°	65.0°
H6	C3	C2	H11	90.0°	179.9°
H6	C3	C2	H12	90.0°	60.0°
H7	C3	C2	H11	90.0°	60.0°
H7	C3	C2	H12	90.0°	179.9°
H8	C1	H9	H10	90.0°	120.0°
H8	C1	C2	H11	90.0°	180.0°
H8	C1	C2	H12	90.0°	60.0°
H9	C1	C2	H11	90.0°	60.0°
H9	C1	C2	H12	90.0°	180.0°
H10	C1	C2	H11	90.0°	60.0°
H10	C1	C2	H12	90.0°	60.0°

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PDB entries from 2024-07-17

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