O8M
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| O2 | C4 | doub | 1.21Å | 1.21Å | |
| C4 | C5 | sing | 1.51Å | 1.50Å | |
| C4 | N1 | sing | 1.35Å | 1.30Å | |
| C5 | N2 | sing | 1.47Å | 1.50Å | |
| N2 | C6 | sing | 1.47Å | 1.43Å | |
| N2 | C5' | sing | 1.47Å | 1.44Å | |
| C5' | C4' | sing | 1.53Å | 1.55Å | |
| C4' | O4' | sing | 1.44Å | 1.47Å | |
| C4' | C3' | sing | 1.54Å | 1.58Å | |
| O4' | C1' | sing | 1.44Å | 1.32Å | |
| C1' | N5 | sing | 1.46Å | 1.43Å | |
| C1' | C2' | sing | 1.55Å | 1.58Å | |
| N5 | C11 | sing | 1.37Å | 1.29Å | Aromatic |
| N5 | C7 | sing | 1.36Å | 1.32Å | Aromatic |
| C11 | N4 | doub | 1.33Å | 1.29Å | Aromatic |
| C11 | C12 | sing | 1.41Å | 1.31Å | Aromatic |
| N4 | C10 | sing | 1.32Å | 1.25Å | Aromatic |
| C10 | N3 | doub | 1.32Å | 1.29Å | Aromatic |
| N3 | C9 | sing | 1.33Å | 1.30Å | Aromatic |
| C9 | N7 | sing | 1.38Å | 1.38Å | |
| C9 | C12 | doub | 1.41Å | 1.36Å | Aromatic |
| C12 | N6 | sing | 1.35Å | 1.29Å | Aromatic |
| N6 | C7 | doub | 1.30Å | 1.24Å | Aromatic |
| C7 | C8 | sing | 1.51Å | 1.37Å | |
| C2' | O2' | sing | 1.43Å | 1.22Å | |
| C2' | C3' | sing | 1.55Å | 1.48Å | |
| C3' | O3' | sing | 1.43Å | 1.25Å | |
| C5 | H5 | sing | 1.09Å | 1.10Å | |
| C5 | H5A | sing | 1.09Å | 1.10Å | |
| C6 | H6 | sing | 1.09Å | 1.10Å | |
| C6 | H6A | sing | 1.09Å | 1.10Å | |
| C6 | H6B | sing | 1.09Å | 1.10Å | |
| C5' | H5' | sing | 1.09Å | 1.10Å | |
| C5' | H5'A | sing | 1.09Å | 1.10Å | |
| C4' | H4' | sing | 1.09Å | 1.10Å | |
| C1' | H1' | sing | 1.09Å | 1.10Å | |
| C10 | H10 | sing | 1.08Å | 1.08Å | |
| N7 | HN7 | sing | 0.97Å | 1.00Å | |
| N7 | HN7A | sing | 0.97Å | 1.00Å | |
| C2' | H2' | sing | 1.09Å | 1.10Å | |
| O2' | HO2' | sing | 0.97Å | 0.95Å | |
| C3' | H3' | sing | 1.09Å | 1.10Å | |
| O3' | HO3' | sing | 0.97Å | 0.95Å | |
| C8 | H8 | sing | 1.09Å | 1.10Å | |
| C8 | H8A | sing | 1.09Å | 1.10Å | |
| C8 | H8B | sing | 1.09Å | 1.10Å | |
| N1 | HN1 | sing | 0.97Å | 1.00Å | |
| N1 | HN1A | sing | 0.97Å | 1.00Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O2 | C4 | C5 | 120.4° | 120.0° |
| O2 | C4 | N1 | 120.4° | 120.0° |
| C5 | C4 | N1 | 119.2° | 120.0° |
| C4 | C5 | N2 | 104.8° | 109.5° |
| C4 | C5 | H5 | 111.1° | 109.4° |
| C4 | C5 | H5A | 112.1° | 109.5° |
| C4 | N1 | HN1 | 110.3° | 120.1° |
| C4 | N1 | HN1A | 124.9° | 120.0° |
| C5 | N2 | C6 | 115.8° | 111.0° |
| C5 | N2 | C5' | 112.5° | 110.9° |
| N2 | C5 | H5 | 111.1° | 109.5° |
| N2 | C5 | H5A | 112.0° | 109.5° |
| C6 | N2 | C5' | 112.6° | 111.0° |
| N2 | C6 | H6 | 109.5° | 109.4° |
| N2 | C6 | H6A | 109.4° | 109.4° |
| N2 | C6 | H6B | 109.5° | 109.5° |
| N2 | C5' | C4' | 114.4° | 109.4° |
| N2 | C5' | H5' | 107.8° | 109.5° |
| N2 | C5' | H5'A | 106.7° | 109.5° |
| C5' | C4' | O4' | 121.0° | 109.9° |
| C5' | C4' | C3' | 123.5° | 109.9° |
| C4' | C5' | H5' | 107.9° | 109.5° |
| C4' | C5' | H5'A | 106.7° | 109.4° |
| C5' | C4' | H4' | 82.8° | 109.9° |
| O4' | C4' | C3' | 107.1° | 107.3° |
| C4' | O4' | C1' | 111.7° | 107.0° |
| O4' | C4' | H4' | 111.2° | 109.9° |
| C4' | C3' | C2' | 95.9° | 104.2° |
| C4' | C3' | O3' | 106.3° | 110.5° |
| C3' | C4' | H4' | 106.9° | 110.0° |
| C4' | C3' | H3' | 121.8° | 110.4° |
| O4' | C1' | N5 | 102.5° | 110.6° |
| O4' | C1' | C2' | 103.5° | 103.5° |
| O4' | C1' | H1' | 119.5° | 110.6° |
| N5 | C1' | C2' | 115.3° | 110.7° |
| C1' | N5 | C11 | 124.8° | 126.3° |
| C1' | N5 | C7 | 129.5° | 126.3° |
| N5 | C1' | H1' | 108.6° | 110.6° |
| C1' | C2' | O2' | 110.9° | 111.0° |
| C1' | C2' | C3' | 105.5° | 102.1° |
| C2' | C1' | H1' | 107.6° | 110.7° |
| C1' | C2' | H2' | 110.9° | 110.9° |
| C11 | N5 | C7 | 105.7° | 107.4° |
| N5 | C11 | N4 | 135.9° | 134.9° |
| N5 | C11 | C12 | 106.8° | 106.0° |
| N5 | C7 | N6 | 111.5° | 110.0° |
| N5 | C7 | C8 | 133.2° | 125.0° |
| N4 | C11 | C12 | 117.3° | 119.1° |
| C11 | N4 | C10 | 124.1° | 120.6° |
| C11 | C12 | C9 | 119.0° | 118.2° |
| C11 | C12 | N6 | 109.5° | 107.1° |
| N4 | C10 | N3 | 120.9° | 122.5° |
| N4 | C10 | H10 | 119.5° | 118.8° |
| C10 | N3 | C9 | 118.9° | 121.2° |
| N3 | C10 | H10 | 119.6° | 118.7° |
| N3 | C9 | N7 | 119.4° | 120.8° |
| N3 | C9 | C12 | 119.5° | 118.4° |
| N7 | C9 | C12 | 121.1° | 120.8° |
| C9 | N7 | HN7 | 109.5° | 120.0° |
| C9 | N7 | HN7A | 109.5° | 120.0° |
| C9 | C12 | N6 | 131.4° | 134.7° |
| C12 | N6 | C7 | 106.6° | 109.5° |
| N6 | C7 | C8 | 115.4° | 125.0° |
| C7 | C8 | H8 | 109.5° | 109.5° |
| C7 | C8 | H8A | 109.4° | 109.5° |
| C7 | C8 | H8B | 109.5° | 109.5° |
| O2' | C2' | C3' | 108.5° | 110.9° |
| O2' | C2' | H2' | 107.9° | 110.8° |
| C2' | O2' | HO2' | 109.5° | 114.1° |
| C2' | C3' | O3' | 115.4° | 110.5° |
| C3' | C2' | H2' | 113.2° | 110.9° |
| C2' | C3' | H3' | 113.5° | 110.5° |
| O3' | C3' | H3' | 104.3° | 110.6° |
| C3' | O3' | HO3' | 109.5° | 114.0° |
| H5 | C5 | H5A | 105.9° | 109.5° |
| H6 | C6 | H6A | 109.5° | 109.5° |
| H6 | C6 | H6B | 109.5° | 109.5° |
| H6A | C6 | H6B | 109.5° | 109.4° |
| H5' | C5' | H5'A | 113.4° | 109.5° |
| HN7 | N7 | HN7A | 109.5° | 120.0° |
| H8 | C8 | H8A | 109.5° | 109.5° |
| H8 | C8 | H8B | 109.4° | 109.4° |
| H8A | C8 | H8B | 109.5° | 109.5° |
| HN1 | N1 | HN1A | 124.8° | 120.0° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O2 | C4 | C5 | N1 | 179.9° | 179.8° |
| O2 | C4 | C5 | N2 | 68.0° | 0.1° |
| O2 | C4 | C5 | H5 | 172.0° | 120.1° |
| O2 | C4 | C5 | H5A | 53.7° | 120.0° |
| O2 | C4 | N1 | HN1 | 0.0° | 0.0° |
| O2 | C4 | N1 | HN1A | 180.0° | 180.0° |
| C4 | C5 | N2 | H5 | 120.0° | 119.9° |
| C4 | C5 | N2 | H5A | 121.8° | 120.0° |
| C4 | C5 | N2 | C6 | 49.7° | 66.1° |
| C4 | C5 | N2 | C5' | 81.7° | 170.0° |
| C4 | C5 | H5 | H5A | 121.9° | 120.0° |
| C5 | C4 | N1 | HN1 | 180.0° | 179.8° |
| C5 | C4 | N1 | HN1A | 0.0° | 0.2° |
| N1 | C4 | C5 | N2 | 112.0° | 179.8° |
| N1 | C4 | C5 | H5 | 8.0° | 59.8° |
| N1 | C4 | C5 | H5A | 126.2° | 60.2° |
| C4 | N1 | HN1 | HN1A | 180.0° | 180.0° |
| C5 | N2 | C6 | C5' | 131.3° | 123.9° |
| C5 | N2 | C5' | C4' | 137.1° | 170.0° |
| N2 | C5 | H5 | H5A | 121.9° | 120.1° |
| C5 | N2 | C6 | H6 | 140.0° | 60.0° |
| C5 | N2 | C6 | H6A | 100.0° | 179.9° |
| C5 | N2 | C6 | H6B | 20.0° | 60.0° |
| C5 | N2 | C5' | H5' | 17.1° | 50.0° |
| C5 | N2 | C5' | H5'A | 105.1° | 70.1° |
| C6 | N2 | C5' | C4' | 89.9° | 66.1° |
| C6 | N2 | C5 | H5 | 70.3° | 174.0° |
| C6 | N2 | C5 | H5A | 171.4° | 53.9° |
| N2 | C6 | H6 | H6A | 120.0° | 120.0° |
| N2 | C6 | H6 | H6B | 120.0° | 120.0° |
| N2 | C6 | H6A | H6B | 120.0° | 120.0° |
| C6 | N2 | C5' | H5' | 150.1° | 173.9° |
| C6 | N2 | C5' | H5'A | 27.9° | 53.9° |
| N2 | C5' | C4' | H5' | 120.0° | 120.0° |
| N2 | C5' | C4' | H5'A | 117.8° | 119.9° |
| N2 | C5' | C4' | O4' | 15.7° | 66.5° |
| N2 | C5' | C4' | C3' | 159.8° | 175.7° |
| C5' | N2 | C5 | H5 | 158.3° | 50.0° |
| C5' | N2 | C5 | H5A | 40.1° | 70.0° |
| C5' | N2 | C6 | H6 | 88.7° | 176.1° |
| C5' | N2 | C6 | H6A | 31.3° | 56.1° |
| C5' | N2 | C6 | H6B | 151.3° | 63.9° |
| N2 | C5' | H5' | H5'A | 118.0° | 120.0° |
| N2 | C5' | C4' | H4' | 94.8° | 54.6° |
| C5' | C4' | O4' | C3' | 149.2° | 119.4° |
| C5' | C4' | O4' | H4' | 94.3° | 121.1° |
| C5' | C4' | C3' | H4' | 92.5° | 121.1° |
| C5' | C4' | O4' | C1' | 141.8° | 145.9° |
| C5' | C4' | C3' | C2' | 119.1° | 121.5° |
| C5' | C4' | C3' | O3' | 122.2° | 119.9° |
| C4' | C5' | H5' | H5'A | 118.0° | 120.0° |
| C5' | C4' | C3' | H3' | 3.3° | 2.8° |
| O4' | C4' | C3' | H4' | 119.3° | 119.5° |
| C4' | O4' | C1' | N5 | 137.3° | 158.6° |
| C4' | O4' | C1' | C2' | 17.0° | 40.0° |
| O4' | C4' | C3' | C2' | 29.1° | 2.1° |
| O4' | C4' | C3' | O3' | 89.6° | 120.7° |
| O4' | C4' | C5' | H5' | 104.3° | 53.5° |
| O4' | C4' | C5' | H5'A | 133.5° | 173.6° |
| C4' | O4' | C1' | H1' | 102.6° | 78.6° |
| O4' | C4' | C3' | H3' | 151.5° | 116.6° |
| C3' | C4' | O4' | C1' | 7.4° | 26.5° |
| C4' | C3' | C2' | C1' | 38.2° | 20.9° |
| C4' | C3' | C2' | O2' | 157.1° | 139.1° |
| C4' | C3' | C2' | O3' | 111.2° | 118.6° |
| C4' | C3' | C2' | H3' | 128.4° | 118.6° |
| C4' | C3' | O3' | H3' | 129.8° | 122.6° |
| C3' | C4' | C5' | H5' | 39.8° | 64.3° |
| C3' | C4' | C5' | H5'A | 82.4° | 55.8° |
| C4' | C3' | C2' | H2' | 83.1° | 97.4° |
| C4' | C3' | O3' | HO3' | 55.6° | 180.0° |
| O4' | C1' | N5 | C2' | 111.7° | 114.1° |
| O4' | C1' | N5 | H1' | 127.4° | 122.8° |
| O4' | C1' | C2' | H1' | 127.5° | 118.5° |
| O4' | C1' | N5 | C11 | 40.9° | 136.5° |
| O4' | C1' | N5 | C7 | 141.1° | 43.3° |
| O4' | C1' | C2' | O2' | 154.9° | 155.2° |
| O4' | C1' | C2' | C3' | 37.6° | 37.0° |
| C1' | O4' | C4' | H4' | 123.9° | 93.0° |
| O4' | C1' | C2' | H2' | 85.2° | 81.2° |
| N5 | C1' | C2' | H1' | 121.4° | 123.0° |
| C1' | N5 | C11 | C7 | 178.5° | 179.8° |
| C1' | N5 | C11 | N4 | 1.0° | 0.1° |
| C1' | N5 | C11 | C12 | 179.4° | 180.0° |
| C1' | N5 | C7 | N6 | 179.9° | 179.8° |
| C1' | N5 | C7 | C8 | 0.1° | 0.1° |
| N5 | C1' | C2' | O2' | 94.0° | 86.3° |
| N5 | C1' | C2' | C3' | 148.8° | 155.5° |
| N5 | C1' | C2' | H2' | 25.9° | 37.3° |
| C2' | C1' | N5 | C11 | 70.9° | 109.4° |
| C2' | C1' | N5 | C7 | 107.2° | 70.8° |
| C1' | C2' | O2' | C3' | 115.4° | 112.8° |
| C1' | C2' | O2' | H2' | 121.6° | 123.7° |
| C1' | C2' | C3' | H2' | 121.4° | 118.2° |
| C1' | C2' | C3' | O3' | 73.0° | 97.8° |
| C1' | C2' | O2' | HO2' | 10.5° | 180.0° |
| C1' | C2' | C3' | H3' | 166.7° | 139.5° |
| N5 | C11 | N4 | C12 | 178.3° | 179.9° |
| N5 | C11 | N4 | C10 | 178.2° | 180.0° |
| N5 | C11 | C12 | C9 | 177.6° | 180.0° |
| N5 | C11 | C12 | N6 | 1.8° | 0.0° |
| C11 | N5 | C7 | N6 | 1.7° | 0.4° |
| C11 | N5 | C7 | C8 | 178.4° | 179.7° |
| C11 | N5 | C1' | H1' | 168.2° | 13.6° |
| C7 | N5 | C11 | N4 | 179.5° | 179.7° |
| C7 | N5 | C11 | C12 | 2.1° | 0.2° |
| N5 | C7 | N6 | C12 | 0.6° | 0.4° |
| N5 | C7 | N6 | C8 | 179.9° | 179.9° |
| C7 | N5 | C1' | H1' | 13.7° | 166.1° |
| N5 | C7 | C8 | H8 | 144.5° | 90.0° |
| N5 | C7 | C8 | H8A | 95.5° | 150.0° |
| N5 | C7 | C8 | H8B | 24.6° | 30.0° |
| C11 | N4 | C10 | N3 | 4.6° | 0.0° |
| N4 | C11 | C12 | C9 | 3.7° | 0.0° |
| N4 | C11 | C12 | N6 | 179.4° | 180.0° |
| C11 | N4 | C10 | H10 | 175.4° | 179.9° |
| C12 | C11 | N4 | C10 | 0.0° | 0.0° |
| C11 | C12 | C9 | N3 | 3.1° | 0.0° |
| C11 | C12 | C9 | N7 | 179.1° | 180.0° |
| C11 | C12 | C9 | N6 | 174.7° | 180.0° |
| C11 | C12 | N6 | C7 | 0.7° | 0.3° |
| N4 | C10 | N3 | H10 | 180.0° | 180.0° |
| N4 | C10 | N3 | C9 | 5.0° | 0.0° |
| C10 | N3 | C9 | N7 | 176.6° | 180.0° |
| C10 | N3 | C9 | C12 | 1.3° | 0.0° |
| N3 | C9 | N7 | C12 | 177.8° | 180.0° |
| N3 | C9 | C12 | N6 | 177.8° | 180.0° |
| C9 | N3 | C10 | H10 | 175.0° | 180.0° |
| N3 | C9 | N7 | HN7 | 13.5° | 0.0° |
| N3 | C9 | N7 | HN7A | 133.6° | 180.0° |
| N7 | C9 | C12 | N6 | 4.5° | 0.0° |
| C9 | N7 | HN7 | HN7A | 120.0° | 180.0° |
| C9 | C12 | N6 | C7 | 175.8° | 179.7° |
| C12 | C9 | N7 | HN7 | 168.7° | 180.0° |
| C12 | C9 | N7 | HN7A | 48.6° | 0.0° |
| C12 | N6 | C7 | C8 | 179.5° | 179.7° |
| N6 | C7 | C8 | H8 | 35.3° | 89.9° |
| N6 | C7 | C8 | H8A | 84.7° | 30.2° |
| N6 | C7 | C8 | H8B | 155.2° | 150.2° |
| C7 | C8 | H8 | H8A | 120.0° | 120.0° |
| C7 | C8 | H8 | H8B | 120.0° | 120.0° |
| C7 | C8 | H8A | H8B | 120.0° | 120.0° |
| O2' | C2' | C3' | H2' | 119.8° | 123.5° |
| O2' | C2' | C3' | O3' | 45.9° | 20.5° |
| O2' | C2' | C1' | H1' | 27.4° | 36.7° |
| O2' | C2' | C3' | H3' | 74.4° | 102.2° |
| C2' | C3' | O3' | H3' | 125.3° | 122.7° |
| C2' | C3' | C4' | H4' | 148.4° | 117.5° |
| C3' | C2' | C1' | H1' | 89.9° | 81.5° |
| C3' | C2' | O2' | HO2' | 125.9° | 67.3° |
| C2' | C3' | O3' | HO3' | 49.3° | 65.3° |
| O3' | C3' | C4' | H4' | 29.7° | 1.2° |
| O3' | C3' | C2' | H2' | 165.7° | 144.0° |
| H6 | C6 | H6A | H6B | 120.0° | 120.1° |
| H5' | C5' | C4' | H4' | 145.2° | 174.6° |
| H5'A | C5' | C4' | H4' | 23.0° | 65.4° |
| H4' | C4' | C3' | H3' | 89.2° | 123.9° |
| H1' | C1' | C2' | H2' | 147.3° | 160.3° |
| H2' | C2' | O2' | HO2' | 111.1° | 56.3° |
| H2' | C2' | C3' | H3' | 45.3° | 21.3° |
| H3' | C3' | O3' | HO3' | 174.6° | 57.4° |
| H8 | C8 | H8A | H8B | 120.0° | 120.0° |
