O7E
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| O71 | C7 | doub | 1.21Å | 1.22Å | |
| C7 | O72 | sing | 1.35Å | 1.46Å | |
| C7 | C6 | sing | 1.48Å | 1.45Å | |
| O72 | C8 | sing | 1.45Å | 1.42Å | |
| C5 | C6 | doub | 1.36Å | 1.38Å | |
| C5 | C4 | sing | 1.47Å | 1.38Å | |
| C6 | N1 | sing | 1.38Å | 1.37Å | |
| C9 | C8 | sing | 1.53Å | 1.51Å | |
| O4' | C1' | sing | 1.44Å | 1.42Å | |
| O4' | C4' | sing | 1.44Å | 1.45Å | |
| O4 | C4 | doub | 1.22Å | 1.26Å | |
| C4 | N3 | sing | 1.35Å | 1.34Å | |
| N1 | C1' | sing | 1.47Å | 1.49Å | |
| N1 | C2 | sing | 1.34Å | 1.34Å | |
| C1' | C2' | sing | 1.54Å | 1.53Å | |
| C4' | C5' | sing | 1.53Å | 1.53Å | |
| C4' | C3' | sing | 1.55Å | 1.50Å | |
| N3 | C2 | sing | 1.34Å | 1.35Å | |
| C2 | O2 | doub | 1.22Å | 1.24Å | |
| O3' | C3' | sing | 1.43Å | 1.44Å | |
| C5' | O5' | sing | 1.43Å | 1.45Å | |
| C3' | C2' | sing | 1.55Å | 1.52Å | |
| C2' | O2' | sing | 1.43Å | 1.42Å | |
| O3P | P | doub | 1.48Å | 1.49Å | |
| O5' | P | sing | 1.61Å | 1.62Å | |
| P | O1P | sing | 1.61Å | 1.49Å | |
| P | O2P | sing | 1.61Å | 1.51Å | |
| O1P | H1 | sing | 0.97Å | 0.95Å | |
| O2P | H2 | sing | 0.97Å | 0.95Å | |
| C5' | H3 | sing | 1.09Å | 1.10Å | |
| C5' | H4 | sing | 1.09Å | 1.10Å | |
| C4' | H5 | sing | 1.09Å | 1.10Å | |
| C3' | H6 | sing | 1.09Å | 1.10Å | |
| O3' | H7 | sing | 0.97Å | 0.95Å | |
| C2' | H8 | sing | 1.09Å | 1.10Å | |
| O2' | H9 | sing | 0.97Å | 0.95Å | |
| C1' | H10 | sing | 1.09Å | 1.10Å | |
| N3 | H11 | sing | 0.97Å | 1.00Å | |
| C5 | H12 | sing | 1.08Å | 1.08Å | |
| C8 | H13 | sing | 1.09Å | 1.10Å | |
| C8 | H14 | sing | 1.09Å | 1.10Å | |
| C9 | H15 | sing | 1.09Å | 1.10Å | |
| C9 | H16 | sing | 1.09Å | 1.10Å | |
| C9 | H17 | sing | 1.09Å | 1.10Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O71 | C7 | O72 | 126.4° | 120.0° |
| O71 | C7 | C6 | 119.7° | 120.0° |
| O72 | C7 | C6 | 113.9° | 120.0° |
| C7 | O72 | C8 | 121.6° | 117.0° |
| C7 | C6 | C5 | 115.5° | 120.3° |
| C7 | C6 | N1 | 119.8° | 120.3° |
| O72 | C8 | C9 | 109.9° | 109.4° |
| O72 | C8 | H13 | 109.4° | 109.5° |
| O72 | C8 | H14 | 109.3° | 109.5° |
| C6 | C5 | C4 | 116.2° | 118.4° |
| C5 | C6 | N1 | 123.8° | 119.4° |
| C6 | C5 | H12 | 121.9° | 120.8° |
| C5 | C4 | O4 | 122.8° | 120.6° |
| C5 | C4 | N3 | 119.3° | 118.8° |
| C4 | C5 | H12 | 121.9° | 120.8° |
| C6 | N1 | C1' | 119.9° | 119.4° |
| C6 | N1 | C2 | 117.1° | 121.2° |
| C9 | C8 | H13 | 109.4° | 109.5° |
| C9 | C8 | H14 | 109.3° | 109.4° |
| C8 | C9 | H15 | 109.5° | 109.5° |
| C8 | C9 | H16 | 109.5° | 109.5° |
| C8 | C9 | H17 | 109.4° | 109.5° |
| C1' | O4' | C4' | 111.1° | 105.2° |
| O4' | C1' | N1 | 109.1° | 110.3° |
| O4' | C1' | C2' | 103.7° | 104.8° |
| O4' | C1' | H10 | 111.1° | 110.4° |
| O4' | C4' | C5' | 108.2° | 110.3° |
| O4' | C4' | C3' | 105.6° | 104.8° |
| O4' | C4' | H5 | 110.4° | 110.5° |
| O4 | C4 | N3 | 117.9° | 120.6° |
| C4 | N3 | C2 | 122.8° | 120.5° |
| C4 | N3 | H11 | 118.6° | 119.7° |
| C1' | N1 | C2 | 123.1° | 119.4° |
| N1 | C1' | C2' | 113.0° | 110.4° |
| N1 | C1' | H10 | 110.1° | 110.4° |
| N1 | C2 | N3 | 120.8° | 121.8° |
| N1 | C2 | O2 | 120.8° | 119.1° |
| C1' | C2' | C3' | 102.8° | 104.1° |
| C1' | C2' | O2' | 110.2° | 110.5° |
| C1' | C2' | H8 | 110.9° | 110.6° |
| C2' | C1' | H10 | 109.7° | 110.4° |
| C5' | C4' | C3' | 113.6° | 110.4° |
| C4' | C5' | O5' | 102.3° | 109.5° |
| C4' | C5' | H3 | 111.2° | 109.5° |
| C4' | C5' | H4 | 111.2° | 109.5° |
| C5' | C4' | H5 | 109.3° | 110.3° |
| C4' | C3' | O3' | 108.1° | 110.4° |
| C4' | C3' | C2' | 101.6° | 104.1° |
| C3' | C4' | H5 | 109.6° | 110.4° |
| C4' | C3' | H6 | 112.2° | 110.5° |
| N3 | C2 | O2 | 118.4° | 119.1° |
| C2 | N3 | H11 | 118.6° | 119.8° |
| O3' | C3' | C2' | 108.8° | 110.5° |
| O3' | C3' | H6 | 113.3° | 110.6° |
| C3' | O3' | H7 | 109.5° | 113.9° |
| C5' | O5' | P | 118.7° | 123.0° |
| O5' | C5' | H3 | 111.3° | 109.4° |
| O5' | C5' | H4 | 111.2° | 109.5° |
| C3' | C2' | O2' | 109.0° | 110.5° |
| C2' | C3' | H6 | 112.0° | 110.6° |
| C3' | C2' | H8 | 111.0° | 110.5° |
| O2' | C2' | H8 | 112.5° | 110.5° |
| C2' | O2' | H9 | 109.5° | 114.0° |
| O3P | P | O5' | 107.0° | 109.4° |
| O3P | P | O1P | 110.7° | 109.5° |
| O3P | P | O2P | 112.5° | 109.5° |
| O5' | P | O1P | 110.4° | 109.5° |
| O5' | P | O2P | 102.4° | 109.5° |
| O1P | P | O2P | 113.3° | 109.5° |
| P | O1P | H1 | 109.5° | 114.0° |
| P | O2P | H2 | 109.5° | 113.9° |
| H3 | C5' | H4 | 109.5° | 109.5° |
| H13 | C8 | H14 | 109.5° | 109.5° |
| H15 | C9 | H16 | 109.5° | 109.4° |
| H15 | C9 | H17 | 109.5° | 109.4° |
| H16 | C9 | H17 | 109.5° | 109.5° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O71 | C7 | O72 | C6 | 179.3° | 180.0° |
| O71 | C7 | O72 | C8 | 136.2° | 0.0° |
| O71 | C7 | C6 | C5 | 118.4° | 94.7° |
| O71 | C7 | C6 | N1 | 50.8° | 86.0° |
| O72 | C7 | C6 | C5 | 62.2° | 85.3° |
| O72 | C7 | C6 | N1 | 128.5° | 94.1° |
| C7 | O72 | C8 | C9 | 146.2° | 180.0° |
| C7 | O72 | C8 | H13 | 26.1° | 60.0° |
| C7 | O72 | C8 | H14 | 93.8° | 60.0° |
| C6 | C7 | O72 | C8 | 43.1° | 180.0° |
| C7 | C6 | C5 | N1 | 168.8° | 179.4° |
| C7 | C6 | C5 | C4 | 167.6° | 179.9° |
| C7 | C6 | N1 | C1' | 14.9° | 0.3° |
| C7 | C6 | N1 | C2 | 166.5° | 180.0° |
| C7 | C6 | C5 | H12 | 12.5° | 0.5° |
| O72 | C8 | C9 | H13 | 120.1° | 120.0° |
| O72 | C8 | C9 | H14 | 120.1° | 120.0° |
| O72 | C8 | H13 | H14 | 119.8° | 120.0° |
| O72 | C8 | C9 | H15 | 180.0° | 180.0° |
| O72 | C8 | C9 | H16 | 60.0° | 60.0° |
| O72 | C8 | C9 | H17 | 60.0° | 60.1° |
| C6 | C5 | C4 | H12 | 180.0° | 179.5° |
| C6 | C5 | C4 | O4 | 179.7° | 179.6° |
| C6 | C5 | C4 | N3 | 0.4° | 0.2° |
| C5 | C6 | N1 | C1' | 176.8° | 179.7° |
| C5 | C6 | N1 | C2 | 1.8° | 0.6° |
| C4 | C5 | C6 | N1 | 1.2° | 0.6° |
| C5 | C4 | O4 | N3 | 179.9° | 179.9° |
| C5 | C4 | N3 | C2 | 0.2° | 0.1° |
| C5 | C4 | N3 | H11 | 179.8° | 179.9° |
| C6 | N1 | C1' | O4' | 118.3° | 128.8° |
| C6 | N1 | C1' | C2 | 178.5° | 179.7° |
| C6 | N1 | C1' | C2' | 126.9° | 115.8° |
| C6 | N1 | C2 | N3 | 1.5° | 0.3° |
| C6 | N1 | C2 | O2 | 179.4° | 179.7° |
| C6 | N1 | C1' | H10 | 3.9° | 6.5° |
| N1 | C6 | C5 | H12 | 178.7° | 179.9° |
| C9 | C8 | H13 | H14 | 119.8° | 120.0° |
| C8 | C9 | H15 | H16 | 120.0° | 120.0° |
| C8 | C9 | H15 | H17 | 120.0° | 120.0° |
| C8 | C9 | H16 | H17 | 120.0° | 120.1° |
| O4' | C1' | N1 | C2' | 114.8° | 115.4° |
| O4' | C1' | N1 | H10 | 122.2° | 122.3° |
| O4' | C1' | N1 | C2 | 63.2° | 51.5° |
| O4' | C1' | C2' | H10 | 118.7° | 118.9° |
| C1' | O4' | C4' | C5' | 113.2° | 159.3° |
| C1' | O4' | C4' | C3' | 8.8° | 40.5° |
| O4' | C1' | C2' | C3' | 33.6° | 24.0° |
| O4' | C1' | C2' | O2' | 149.7° | 142.6° |
| C1' | O4' | C4' | H5 | 127.2° | 78.4° |
| O4' | C1' | C2' | H8 | 85.0° | 94.7° |
| C4' | O4' | C1' | N1 | 136.4° | 159.4° |
| C4' | O4' | C1' | C2' | 15.7° | 40.5° |
| O4' | C4' | C5' | C3' | 117.0° | 115.3° |
| O4' | C4' | C5' | H5 | 120.2° | 122.4° |
| O4' | C4' | C3' | H5 | 118.9° | 119.0° |
| O4' | C4' | C3' | O3' | 85.1° | 142.7° |
| O4' | C4' | C5' | O5' | 169.7° | 69.6° |
| O4' | C4' | C3' | C2' | 29.4° | 24.0° |
| O4' | C4' | C5' | H3 | 71.4° | 50.3° |
| O4' | C4' | C5' | H4 | 50.9° | 170.4° |
| O4' | C4' | C3' | H6 | 149.3° | 94.7° |
| C4' | O4' | C1' | H10 | 102.0° | 78.3° |
| O4 | C4 | N3 | C2 | 179.9° | 180.0° |
| O4 | C4 | N3 | H11 | 0.1° | 0.1° |
| O4 | C4 | C5 | H12 | 0.4° | 0.1° |
| C4 | N3 | C2 | N1 | 0.8° | 0.1° |
| C4 | N3 | C2 | H11 | 180.0° | 180.0° |
| C4 | N3 | C2 | O2 | 179.9° | 179.9° |
| N3 | C4 | C5 | H12 | 179.6° | 179.8° |
| N1 | C1' | C2' | H10 | 123.3° | 122.3° |
| C1' | N1 | C2 | N3 | 177.0° | 180.0° |
| C1' | N1 | C2 | O2 | 2.1° | 0.1° |
| N1 | C1' | C2' | C3' | 151.6° | 142.8° |
| N1 | C1' | C2' | O2' | 92.4° | 98.6° |
| N1 | C1' | C2' | H8 | 32.9° | 24.2° |
| C2 | N1 | C1' | C2' | 51.6° | 63.9° |
| N1 | C2 | N3 | O2 | 179.1° | 180.0° |
| C2 | N1 | C1' | H10 | 174.6° | 173.8° |
| N1 | C2 | N3 | H11 | 179.2° | 180.0° |
| C1' | C2' | C3' | C4' | 38.3° | 0.0° |
| C1' | C2' | C3' | O3' | 75.6° | 118.6° |
| C1' | C2' | C3' | O2' | 116.9° | 118.6° |
| C1' | C2' | C3' | H8 | 118.6° | 118.8° |
| C1' | C2' | O2' | H8 | 124.4° | 122.8° |
| C1' | C2' | C3' | H6 | 158.4° | 118.6° |
| C1' | C2' | O2' | H9 | 180.0° | 176.1° |
| C5' | C4' | C3' | H5 | 122.6° | 122.2° |
| C5' | C4' | C3' | O3' | 156.5° | 98.5° |
| C4' | C5' | O5' | H3 | 118.8° | 120.0° |
| C4' | C5' | O5' | H4 | 118.8° | 120.0° |
| C5' | C4' | C3' | C2' | 89.1° | 142.8° |
| C4' | C5' | O5' | P | 178.4° | 180.0° |
| C4' | C5' | H3 | H4 | 123.3° | 120.1° |
| C5' | C4' | C3' | H6 | 30.8° | 24.1° |
| C4' | C3' | O3' | C2' | 109.6° | 114.6° |
| C4' | C3' | O3' | H6 | 125.1° | 122.6° |
| C3' | C4' | C5' | O5' | 73.3° | 175.1° |
| C4' | C3' | C2' | H6 | 120.0° | 118.6° |
| C4' | C3' | C2' | O2' | 155.3° | 118.6° |
| C3' | C4' | C5' | H3 | 45.5° | 65.0° |
| C3' | C4' | C5' | H4 | 167.9° | 55.0° |
| C4' | C3' | O3' | H7 | 180.0° | 180.0° |
| C4' | C3' | C2' | H8 | 80.3° | 118.8° |
| O2 | C2 | N3 | H11 | 0.1° | 0.1° |
| O3' | C3' | C2' | H6 | 126.0° | 122.8° |
| O3' | C3' | C2' | O2' | 41.3° | 0.0° |
| O3' | C3' | C4' | H5 | 33.9° | 23.7° |
| O3' | C3' | C2' | H8 | 165.8° | 122.6° |
| C5' | O5' | P | O3P | 84.5° | 55.0° |
| C5' | O5' | P | O1P | 36.1° | 175.0° |
| C5' | O5' | P | O2P | 157.0° | 65.0° |
| O5' | C5' | H3 | H4 | 123.4° | 120.0° |
| O5' | C5' | C4' | H5 | 49.5° | 52.8° |
| C3' | C2' | O2' | H8 | 123.5° | 122.6° |
| C2' | C3' | C4' | H5 | 148.3° | 94.9° |
| C2' | C3' | O3' | H7 | 70.4° | 65.4° |
| C3' | C2' | O2' | H9 | 67.9° | 61.5° |
| C3' | C2' | C1' | H10 | 85.1° | 94.9° |
| O2' | C2' | C3' | H6 | 84.7° | 122.7° |
| O2' | C2' | C1' | H10 | 30.9° | 23.7° |
| O3P | P | O5' | O1P | 120.6° | 120.0° |
| O3P | P | O5' | O2P | 118.5° | 120.0° |
| O3P | P | O1P | O2P | 127.5° | 120.0° |
| O3P | P | O1P | H1 | 0.0° | 60.0° |
| O3P | P | O2P | H2 | 0.0° | 180.0° |
| O5' | P | O1P | O2P | 114.1° | 120.0° |
| O5' | P | O1P | H1 | 118.3° | 180.0° |
| O5' | P | O2P | H2 | 114.6° | 60.1° |
| P | O5' | C5' | H3 | 59.6° | 60.0° |
| P | O5' | C5' | H4 | 62.8° | 60.0° |
| O1P | P | O2P | H2 | 126.6° | 60.0° |
| O2P | P | O1P | H1 | 127.5° | 60.0° |
| H3 | C5' | C4' | H5 | 168.4° | 172.7° |
| H4 | C5' | C4' | H5 | 69.3° | 67.2° |
| H5 | C4' | C3' | H6 | 91.8° | 146.4° |
| H6 | C3' | O3' | H7 | 55.0° | 57.4° |
| H6 | C3' | C2' | H8 | 39.8° | 0.2° |
| H8 | C2' | O2' | H9 | 55.7° | 61.1° |
| H8 | C2' | C1' | H10 | 156.3° | 146.5° |
| H13 | C8 | C9 | H15 | 59.9° | 60.0° |
| H13 | C8 | C9 | H16 | 179.9° | 180.0° |
| H13 | C8 | C9 | H17 | 60.1° | 60.0° |
| H14 | C8 | C9 | H15 | 60.0° | 60.0° |
| H14 | C8 | C9 | H16 | 60.0° | 60.0° |
| H14 | C8 | C9 | H17 | 180.0° | 180.0° |
| H15 | C9 | H16 | H17 | 120.0° | 120.0° |
