English 日本語简体中文繁體中文 한국어

✖

Menu

RCSB PDB PDBe BMRB Adv. Search Search help

Summary Geometry Related PDB entries

O78

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
O8	C1	doub	1.22Å	1.25Å
O9	C1	sing	1.35Å	1.26Å
C1	C2	sing	1.47Å	1.47Å
C2	C7	doub	1.34Å	1.34Å
C2	C3	sing	1.50Å	1.52Å
C7	C6	sing	1.47Å	1.48Å
C3	C4	sing	1.53Å	1.53Å
C6	N10	doub	1.29Å	1.26Å
C6	C5	sing	1.52Å	1.51Å
C4	C5	sing	1.54Å	1.53Å
C4	H1	sing	1.09Å	1.10Å
C4	H2	sing	1.09Å	1.10Å
C3	H5	sing	1.09Å	1.10Å
C3	H6	sing	1.09Å	1.10Å
C7	H7	sing	1.08Å	1.08Å
N10	H9	sing	0.97Å	1.00Å
O9	H10	sing	0.97Å	0.95Å
C5	H3	sing	1.09Å	1.10Å
C5	H8	sing	1.09Å	1.10Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
O8	C1	O9	121.8°	120.0°
O8	C1	C2	117.6°	120.0°
O9	C1	C2	120.6°	120.0°
C1	O9	H10	109.5°	117.0°
C1	C2	C7	118.4°	118.5°
C1	C2	C3	120.8°	118.5°
C7	C2	C3	120.8°	123.0°
C2	C7	C6	119.3°	120.3°
C2	C7	H7	120.3°	119.8°
C2	C3	C4	112.3°	111.2°
C2	C3	H5	108.8°	109.1°
C2	C3	H6	108.8°	109.1°
C7	C6	N10	119.3°	121.2°
C7	C6	C5	120.2°	117.7°
C6	C7	H7	120.3°	119.8°
C3	C4	C5	111.3°	109.1°
C3	C4	H1	109.0°	109.5°
C3	C4	H2	109.0°	109.6°
C4	C3	H5	108.8°	109.1°
C4	C3	H6	108.8°	109.1°
N10	C6	C5	120.5°	121.2°
C6	N10	H9	112.0°	120.0°
C6	C5	C4	106.3°	107.3°
C6	C5	H3	110.2°	109.9°
C6	C5	H8	110.2°	109.9°
C5	C4	H1	109.0°	109.5°
C5	C4	H2	109.0°	109.5°
C4	C5	H3	110.3°	109.9°
C4	C5	H8	110.3°	109.9°
H1	C4	H2	109.5°	109.5°
H5	C3	H6	109.4°	109.1°
H3	C5	H8	109.5°	109.9°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O8	C1	O9	C2	179.2°	180.0°
O8	C1	C2	C7	14.7°	0.1°
O8	C1	C2	C3	164.4°	180.0°
O8	C1	O9	H10	0.0°	0.0°
O9	C1	C2	C7	166.1°	180.0°
O9	C1	C2	C3	14.8°	0.0°
C1	C2	C7	C3	179.1°	180.0°
C1	C2	C7	C6	156.2°	179.3°
C1	C2	C3	C4	175.3°	157.7°
C1	C2	C3	H5	64.3°	37.3°
C1	C2	C3	H6	54.8°	81.8°
C1	C2	C7	H7	23.8°	0.8°
C2	C1	O9	H10	179.2°	180.0°
C2	C7	C6	H7	180.0°	179.9°
C7	C2	C3	C4	5.6°	22.2°
C2	C7	C6	N10	172.1°	168.5°
C2	C7	C6	C5	8.1°	11.5°
C7	C2	C3	H5	114.8°	142.6°
C7	C2	C3	H6	126.1°	98.2°
C3	C2	C7	C6	22.9°	0.6°
C2	C3	C4	H5	120.4°	120.4°
C2	C3	C4	H6	120.4°	120.5°
C2	C3	C4	C5	48.5°	53.2°
C2	C3	C4	H1	168.8°	66.7°
C2	C3	C4	H2	71.8°	173.1°
C2	C3	H5	H6	118.7°	119.2°
C3	C2	C7	H7	157.1°	179.2°
C7	C6	N10	C5	179.8°	180.0°
C7	C6	C5	C4	32.8°	42.0°
C7	C6	N10	H9	179.8°	180.0°
C7	C6	C5	H3	152.4°	77.4°
C7	C6	C5	H8	86.7°	161.6°
C3	C4	C5	C6	59.7°	62.4°
C3	C4	C5	H1	120.3°	119.9°
C3	C4	C5	H2	120.3°	120.0°
C3	C4	H1	H2	119.2°	120.2°
C4	C3	H5	H6	118.7°	119.1°
C3	C4	C5	H3	179.2°	57.0°
C3	C4	C5	H8	59.8°	178.1°
N10	C6	C5	C4	147.0°	138.0°
N10	C6	C7	H7	7.9°	11.6°
N10	C6	C5	H3	27.4°	102.6°
N10	C6	C5	H8	93.5°	18.4°
C6	C5	C4	H3	119.5°	119.4°
C6	C5	C4	H8	119.5°	119.5°
C6	C5	C4	H1	180.0°	57.5°
C6	C5	C4	H2	60.6°	177.6°
C5	C6	C7	H7	171.9°	168.4°
C5	C6	N10	H9	0.0°	0.0°
C6	C5	H3	H8	121.4°	121.1°
C5	C4	H1	H2	119.1°	120.2°
C5	C4	C3	H5	71.9°	173.6°
C5	C4	C3	H6	168.9°	67.3°
C4	C5	H3	H8	121.5°	121.1°
H1	C4	C3	H5	48.3°	53.7°
H1	C4	C3	H6	70.8°	172.8°
H1	C4	C5	H3	60.5°	176.9°
H1	C4	C5	H8	60.5°	62.0°
H2	C4	C3	H5	167.8°	66.4°
H2	C4	C3	H6	48.7°	52.7°
H2	C4	C5	H3	58.9°	62.9°
H2	C4	C5	H8	179.9°	58.1°

222624

PDB entries from 2024-07-17

PDB statistics

PDBj update info

Contact PDBj

numon