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SummaryGeometryRelated PDB entries

O3B

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
O12B11sing1.42Å1.38Å
O13B11sing1.42Å1.38Å
B11C08sing1.57Å1.60Å
C08C07doub1.39Å1.41ÅAromatic
C08C09sing1.39Å1.41ÅAromatic
C07C06sing1.38Å1.45ÅAromatic
C09C10doub1.38Å1.45ÅAromatic
C06C05doub1.38Å1.42ÅAromatic
C10C05sing1.38Å1.42ÅAromatic
C05S02sing1.76Å1.94Å
N01S02sing1.66Å1.65Å
O04S02doub1.42Å1.43Å
S02O03doub1.42Å1.43Å
N01H1sing0.97Å1.00Å
N01H2sing0.97Å1.00Å
C06H3sing1.08Å1.08Å
C07H4sing1.08Å1.08Å
C09H5sing1.08Å1.08Å
C10H6sing1.08Å1.08Å
O12H7sing0.97Å0.95Å
O13H8sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
O12B11O13115.3°120.0°
O12B11C08122.7°120.0°
B11O12H7109.5°114.0°
O13B11C08121.9°120.0°
B11O13H8109.5°114.0°
B11C08C07120.9°120.1°
B11C08C09120.7°120.1°
C07C08C09118.4°119.7°
C08C07C06120.8°119.9°
C08C07H4119.6°120.0°
C08C09C10120.7°119.9°
C08C09H5119.7°120.0°
C07C06C05121.3°120.1°
C07C06H3119.4°120.0°
C06C07H4119.6°120.1°
C09C10C05121.4°120.1°
C10C09H5119.6°120.1°
C09C10H6119.3°120.0°
C06C05C10117.4°120.3°
C06C05S02121.2°119.9°
C05C06H3119.4°119.9°
C10C05S02121.3°119.9°
C05C10H6119.3°119.9°
C05S02N01106.3°107.2°
C05S02O04108.6°106.4°
C05S02O03108.6°106.4°
N01S02O04111.2°106.4°
N01S02O03111.1°106.4°
S02N01H1109.5°120.0°
S02N01H2109.5°120.0°
O04S02O03110.9°123.1°
H1N01H2109.4°120.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
O12B11O13C08176.7°180.0°
O12B11C08C073.8°0.1°
O12B11C08C09176.2°180.0°
O12B11O13H8180.0°0.0°
O13B11C08C07172.7°180.0°
O13B11C08C097.4°0.1°
O13B11O12H7180.0°0.0°
B11C08C07C09179.9°179.9°
B11C08C07C06180.0°180.0°
B11C08C09C10180.0°179.8°
B11C08C07H40.0°0.0°
B11C08C09H50.0°0.1°
C08B11O12H73.3°180.0°
C08B11O13H83.3°180.0°
C08C07C06H4180.0°180.0°
C07C08C09C100.1°0.2°
C08C07C06C050.0°0.0°
C08C07C06H3180.0°180.0°
C07C08C09H5179.9°180.0°
C09C08C07C060.0°0.1°
C08C09C10H5180.0°179.9°
C08C09C10C050.1°0.4°
C09C08C07H4180.0°180.0°
C08C09C10H6179.9°179.9°
C07C06C05H3180.0°179.9°
C07C06C05C100.0°0.2°
C07C06C05S02180.0°180.0°
C09C10C05C060.0°0.5°
C09C10C05H6180.0°179.5°
C09C10C05S02180.0°179.8°
C06C05C10S02180.0°179.7°
C06C05S02N01123.0°90.0°
C06C05S02O043.3°156.5°
C06C05S02O03117.4°23.5°
C05C06C07H4180.0°180.0°
C06C05C10H6180.0°180.0°
C10C05S02N0157.0°90.3°
C10C05S02O04176.7°23.3°
C10C05S02O0362.6°156.2°
C10C05C06H3180.0°179.7°
C05C10C09H5179.9°179.7°
C05S02N01O04118.0°113.6°
C05S02N01O03118.0°113.5°
C05S02O04O03119.3°123.0°
C05S02N01H1180.0°0.1°
C05S02N01H260.0°179.7°
S02C05C06H30.0°0.0°
S02C05C10H60.0°0.3°
N01S02O04O03124.1°122.9°
S02N01H1H2120.0°179.6°
O04S02N01H162.0°113.5°
O04S02N01H258.0°66.1°
O03S02N01H162.0°113.6°
O03S02N01H2178.0°66.7°
H3C06C07H40.0°0.1°
H5C09C10H60.1°0.2°

250059

PDB entries from 2026-03-04

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