O2Z
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| O3' | C3' | sing | 1.43Å | 1.41Å | |
| OP1 | P | sing | 1.61Å | 1.46Å | |
| O2' | C2' | sing | 1.43Å | 1.41Å | |
| C3' | C4' | sing | 1.54Å | 1.52Å | |
| C3' | C2' | sing | 1.55Å | 1.52Å | |
| C5' | C4' | sing | 1.53Å | 1.50Å | |
| C5' | O5' | sing | 1.43Å | 1.41Å | |
| C4' | O4' | sing | 1.44Å | 1.44Å | |
| C2' | C1' | sing | 1.55Å | 1.53Å | |
| O5' | P | sing | 1.61Å | 1.57Å | |
| P | OP2 | doub | 1.48Å | 1.45Å | |
| O4' | C1' | sing | 1.44Å | 1.41Å | |
| C1' | N9 | sing | 1.46Å | 1.47Å | |
| N9 | C8 | sing | 1.36Å | 1.41Å | Aromatic |
| N9 | C4 | sing | 1.37Å | 1.37Å | Aromatic |
| C8 | N7 | doub | 1.30Å | 1.38Å | Aromatic |
| N3 | C4 | doub | 1.33Å | 1.22Å | Aromatic |
| N3 | C2 | sing | 1.32Å | 1.35Å | Aromatic |
| C4 | C5 | sing | 1.40Å | 1.23Å | Aromatic |
| N26 | C2 | sing | 1.38Å | 1.41Å | |
| C2 | N1 | doub | 1.33Å | 1.42Å | Aromatic |
| N7 | C5 | sing | 1.36Å | 1.42Å | Aromatic |
| C5 | C6 | doub | 1.41Å | 1.40Å | Aromatic |
| N1 | C6 | sing | 1.33Å | 1.41Å | Aromatic |
| C6 | N6 | sing | 1.38Å | 1.41Å | |
| N6 | N25 | sing | 1.37Å | 1.41Å | |
| OP1 | H2 | sing | 0.97Å | 0.95Å | |
| C5' | H5'1 | sing | 1.09Å | 1.10Å | |
| C5' | H5'2 | sing | 1.09Å | 1.10Å | |
| C4' | H4' | sing | 1.09Å | 1.10Å | |
| C3' | H3' | sing | 1.09Å | 1.10Å | |
| O3' | H3 | sing | 0.97Å | 0.95Å | |
| C2' | H2' | sing | 1.09Å | 1.10Å | |
| C1' | H4 | sing | 1.09Å | 1.10Å | |
| C8 | H5 | sing | 1.08Å | 1.08Å | |
| N6 | H6 | sing | 0.97Å | 1.00Å | |
| O2' | H7 | sing | 0.97Å | 0.95Å | |
| N26 | H8 | sing | 0.97Å | 1.00Å | |
| N26 | H9 | sing | 0.97Å | 1.00Å | |
| N25 | H10 | sing | 1.01Å | 1.00Å | |
| N25 | H11 | sing | 1.01Å | 1.00Å | |
| P | OP3 | sing | 1.61Å | 16.96Å | |
| OP3 | H1 | sing | 0.97Å | 0.00Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O3' | C3' | C4' | 109.6° | 110.5° |
| O3' | C3' | C2' | 115.4° | 110.5° |
| O3' | C3' | H3' | 111.1° | 110.6° |
| C3' | O3' | H3 | 109.5° | 114.0° |
| OP1 | P | O5' | 113.1° | 109.5° |
| OP1 | P | OP2 | 126.3° | 109.5° |
| P | OP1 | H2 | 109.5° | 114.0° |
| OP1 | P | OP3 | 63.5° | 109.5° |
| O2' | C2' | C3' | 109.5° | 110.9° |
| O2' | C2' | C1' | 108.0° | 110.9° |
| O2' | C2' | H2' | 113.9° | 110.8° |
| C2' | O2' | H7 | 109.5° | 114.0° |
| C4' | C3' | C2' | 101.1° | 104.2° |
| C3' | C4' | C5' | 116.5° | 109.9° |
| C3' | C4' | O4' | 103.9° | 107.3° |
| C3' | C4' | H4' | 108.1° | 110.0° |
| C4' | C3' | H3' | 109.6° | 110.5° |
| C3' | C2' | C1' | 100.7° | 102.1° |
| C2' | C3' | H3' | 109.5° | 110.5° |
| C3' | C2' | H2' | 112.0° | 110.9° |
| C4' | C5' | O5' | 110.1° | 109.5° |
| C5' | C4' | O4' | 110.8° | 109.9° |
| C4' | C5' | H5'1 | 109.3° | 109.5° |
| C4' | C5' | H5'2 | 109.3° | 109.5° |
| C5' | C4' | H4' | 108.3° | 109.9° |
| C5' | O5' | P | 121.0° | 123.0° |
| O5' | C5' | H5'1 | 109.3° | 109.5° |
| O5' | C5' | H5'2 | 109.3° | 109.4° |
| C4' | O4' | C1' | 109.2° | 107.0° |
| O4' | C4' | H4' | 109.1° | 109.9° |
| C2' | C1' | O4' | 107.3° | 103.5° |
| C2' | C1' | N9 | 112.1° | 110.7° |
| C1' | C2' | H2' | 111.9° | 110.9° |
| C2' | C1' | H4 | 109.0° | 110.7° |
| O5' | P | OP2 | 108.7° | 109.5° |
| O5' | P | OP3 | 98.8° | 109.5° |
| OP2 | P | OP3 | 78.4° | 109.4° |
| O4' | C1' | N9 | 107.8° | 110.6° |
| O4' | C1' | H4 | 110.7° | 110.6° |
| C1' | N9 | C8 | 124.4° | 126.3° |
| C1' | N9 | C4 | 125.8° | 126.3° |
| N9 | C1' | H4 | 109.8° | 110.7° |
| C8 | N9 | C4 | 109.6° | 107.4° |
| N9 | C8 | N7 | 106.0° | 110.0° |
| N9 | C8 | H5 | 127.0° | 125.0° |
| N9 | C4 | N3 | 127.6° | 134.8° |
| N9 | C4 | C5 | 105.2° | 106.0° |
| C8 | N7 | C5 | 102.2° | 109.4° |
| N7 | C8 | H5 | 127.0° | 125.0° |
| C4 | N3 | C2 | 121.1° | 120.5° |
| N3 | C4 | C5 | 127.2° | 119.2° |
| N3 | C2 | N26 | 124.7° | 118.9° |
| N3 | C2 | N1 | 118.2° | 122.3° |
| C4 | C5 | N7 | 116.9° | 107.2° |
| C4 | C5 | C6 | 120.4° | 118.3° |
| N26 | C2 | N1 | 117.1° | 118.8° |
| C2 | N26 | H8 | 109.5° | 120.1° |
| C2 | N26 | H9 | 109.5° | 120.0° |
| C2 | N1 | C6 | 116.5° | 121.1° |
| N7 | C5 | C6 | 122.6° | 134.6° |
| C5 | C6 | N1 | 116.5° | 118.6° |
| C5 | C6 | N6 | 130.0° | 120.7° |
| N1 | C6 | N6 | 113.4° | 120.7° |
| C6 | N6 | N25 | 118.9° | 120.0° |
| C6 | N6 | H6 | 107.1° | 120.0° |
| N25 | N6 | H6 | 107.1° | 120.0° |
| N6 | N25 | H10 | 109.5° | 111.0° |
| N6 | N25 | H11 | 109.5° | 111.0° |
| H5'1 | C5' | H5'2 | 109.5° | 109.5° |
| H8 | N26 | H9 | 109.5° | 119.9° |
| H10 | N25 | H11 | 109.5° | 111.0° |
| P | OP3 | H1 | 90.0° | 114.0° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O3' | C3' | C2' | O2' | 44.1° | 20.4° |
| O3' | C3' | C4' | C2' | 122.3° | 118.7° |
| O3' | C3' | C4' | H3' | 122.2° | 122.7° |
| O3' | C3' | C2' | H3' | 126.2° | 122.7° |
| O3' | C3' | C4' | C5' | 75.9° | 119.9° |
| O3' | C3' | C4' | O4' | 162.1° | 120.7° |
| O3' | C3' | C2' | C1' | 157.7° | 97.8° |
| O3' | C3' | C4' | H4' | 46.3° | 1.2° |
| O3' | C3' | C2' | H2' | 83.3° | 143.9° |
| OP1 | P | O5' | C5' | 39.1° | 65.0° |
| OP1 | P | O5' | OP2 | 145.6° | 120.0° |
| OP1 | P | O5' | OP3 | 64.9° | 120.0° |
| OP1 | P | OP2 | OP3 | 44.3° | 120.0° |
| OP1 | P | OP3 | H1 | 90.0° | 59.9° |
| O2' | C2' | C3' | C4' | 74.1° | 139.1° |
| O2' | C2' | C3' | C1' | 113.6° | 118.2° |
| O2' | C2' | C3' | H2' | 127.4° | 123.5° |
| O2' | C2' | C1' | H2' | 126.1° | 123.5° |
| O2' | C2' | C1' | O4' | 88.1° | 155.2° |
| O2' | C2' | C1' | N9 | 153.7° | 86.3° |
| O2' | C2' | C3' | H3' | 170.3° | 102.3° |
| O2' | C2' | C1' | H4 | 31.9° | 36.8° |
| C4' | C3' | C2' | H3' | 115.6° | 118.6° |
| C3' | C4' | C5' | O4' | 118.4° | 117.8° |
| C3' | C4' | C5' | H4' | 122.1° | 121.1° |
| C3' | C4' | C5' | O5' | 56.9° | 175.7° |
| C3' | C4' | O4' | H4' | 115.1° | 119.5° |
| C4' | C3' | C2' | C1' | 39.5° | 20.9° |
| C3' | C4' | O4' | C1' | 23.9° | 26.5° |
| C3' | C4' | C5' | H5'1 | 177.0° | 64.3° |
| C3' | C4' | C5' | H5'2 | 63.2° | 55.7° |
| C4' | C3' | O3' | H3 | 180.0° | 180.0° |
| C4' | C3' | C2' | H2' | 158.6° | 97.3° |
| C2' | C3' | C4' | C5' | 161.9° | 121.4° |
| C2' | C3' | C4' | O4' | 39.8° | 2.0° |
| C3' | C2' | C1' | H2' | 119.2° | 118.3° |
| C3' | C2' | C1' | O4' | 26.6° | 37.1° |
| C3' | C2' | C1' | N9 | 91.5° | 155.5° |
| C2' | C3' | C4' | H4' | 76.0° | 117.5° |
| C2' | C3' | O3' | H3 | 66.7° | 65.3° |
| C3' | C2' | C1' | H4 | 146.6° | 81.4° |
| C3' | C2' | O2' | H7 | 180.0° | 61.4° |
| C4' | C5' | O5' | H5'1 | 120.1° | 120.1° |
| C4' | C5' | O5' | H5'2 | 120.1° | 120.0° |
| C5' | C4' | O4' | H4' | 119.1° | 121.0° |
| C4' | C5' | O5' | P | 176.7° | 180.0° |
| C5' | C4' | O4' | C1' | 149.7° | 145.9° |
| C4' | C5' | H5'1 | H5'2 | 119.7° | 120.0° |
| C5' | C4' | C3' | H3' | 46.3° | 2.8° |
| O5' | C5' | C4' | O4' | 61.4° | 66.5° |
| C5' | O5' | P | OP2 | 175.3° | 55.0° |
| O5' | C5' | H5'1 | H5'2 | 119.7° | 120.0° |
| O5' | C5' | C4' | H4' | 179.0° | 54.6° |
| C5' | O5' | P | OP3 | 104.0° | 175.0° |
| C4' | O4' | C1' | C2' | 1.9° | 40.1° |
| C4' | O4' | C1' | N9 | 119.0° | 158.6° |
| O4' | C4' | C5' | H5'1 | 58.6° | 53.6° |
| O4' | C4' | C5' | H5'2 | 178.5° | 173.5° |
| O4' | C4' | C3' | H3' | 75.8° | 116.6° |
| C4' | O4' | C1' | H4 | 120.8° | 78.5° |
| C2' | C1' | O4' | N9 | 120.9° | 118.5° |
| C2' | C1' | O4' | H4 | 118.9° | 118.5° |
| C2' | C1' | N9 | H4 | 121.4° | 123.1° |
| C2' | C1' | N9 | C8 | 107.5° | 90.5° |
| C2' | C1' | N9 | C4 | 77.1° | 89.2° |
| C1' | C2' | C3' | H3' | 76.1° | 139.5° |
| C1' | C2' | O2' | H7 | 71.2° | 174.2° |
| O5' | P | OP2 | OP3 | 95.5° | 120.0° |
| O5' | P | OP1 | H2 | 138.3° | 60.0° |
| P | O5' | C5' | H5'1 | 63.2° | 59.9° |
| P | O5' | C5' | H5'2 | 56.6° | 60.0° |
| O5' | P | OP3 | H1 | 90.0° | 179.9° |
| OP2 | P | OP1 | H2 | 0.0° | 180.0° |
| OP2 | P | OP3 | H1 | 90.0° | 60.1° |
| O4' | C1' | N9 | H4 | 120.7° | 122.9° |
| O4' | C1' | N9 | C8 | 10.3° | 23.6° |
| O4' | C1' | N9 | C4 | 165.1° | 156.7° |
| C1' | O4' | C4' | H4' | 91.2° | 93.1° |
| O4' | C1' | C2' | H2' | 145.8° | 81.2° |
| C1' | N9 | C8 | C4 | 176.0° | 179.7° |
| C1' | N9 | C8 | N7 | 178.8° | 179.9° |
| C1' | N9 | C4 | N3 | 4.3° | 0.7° |
| C1' | N9 | C4 | C5 | 178.9° | 180.0° |
| N9 | C1' | C2' | H2' | 27.6° | 37.3° |
| C1' | N9 | C8 | H5 | 1.2° | 0.1° |
| N9 | C8 | N7 | H5 | 180.0° | 180.0° |
| C8 | N9 | C4 | N3 | 179.8° | 179.6° |
| C8 | N9 | C4 | C5 | 2.9° | 0.3° |
| N9 | C8 | N7 | C5 | 1.5° | 0.0° |
| C8 | N9 | C1' | H4 | 131.1° | 146.5° |
| C4 | N9 | C8 | N7 | 2.7° | 0.2° |
| N9 | C4 | N3 | C5 | 176.2° | 179.2° |
| N9 | C4 | N3 | C2 | 176.9° | 179.6° |
| N9 | C4 | C5 | N7 | 2.0° | 0.3° |
| N9 | C4 | C5 | C6 | 179.3° | 179.8° |
| C4 | N9 | C1' | H4 | 44.3° | 33.9° |
| C4 | N9 | C8 | H5 | 177.2° | 179.8° |
| C8 | N7 | C5 | C4 | 0.4° | 0.2° |
| C8 | N7 | C5 | C6 | 177.5° | 180.0° |
| C4 | N3 | C2 | N26 | 179.0° | 179.8° |
| C4 | N3 | C2 | N1 | 1.9° | 0.2° |
| N3 | C4 | C5 | N7 | 178.9° | 179.7° |
| N3 | C4 | C5 | C6 | 3.8° | 0.4° |
| C2 | N3 | C4 | C5 | 0.7° | 0.4° |
| N3 | C2 | N26 | N1 | 179.1° | 179.9° |
| N3 | C2 | N1 | C6 | 1.3° | 0.1° |
| N3 | C2 | N26 | H8 | 0.0° | 180.0° |
| N3 | C2 | N26 | H9 | 120.0° | 0.0° |
| C4 | C5 | N7 | C6 | 177.2° | 179.8° |
| C4 | C5 | C6 | N1 | 4.0° | 0.2° |
| C4 | C5 | C6 | N6 | 176.7° | 179.7° |
| N26 | C2 | N1 | C6 | 179.6° | 179.9° |
| C2 | N26 | H8 | H9 | 120.0° | 180.0° |
| C2 | N1 | C6 | C5 | 1.5° | 0.1° |
| C2 | N1 | C6 | N6 | 179.1° | 180.0° |
| N1 | C2 | N26 | H8 | 179.1° | 0.0° |
| N1 | C2 | N26 | H9 | 59.1° | 179.9° |
| N7 | C5 | C6 | N1 | 178.9° | 180.0° |
| N7 | C5 | C6 | N6 | 0.4° | 0.1° |
| C5 | N7 | C8 | H5 | 178.5° | 180.0° |
| C5 | C6 | N1 | N6 | 179.4° | 179.9° |
| C5 | C6 | N6 | N25 | 0.4° | 180.0° |
| C5 | C6 | N6 | H6 | 121.7° | 0.1° |
| N1 | C6 | N6 | N25 | 178.9° | 0.1° |
| N1 | C6 | N6 | H6 | 57.6° | 180.0° |
| C6 | N6 | N25 | H6 | 121.3° | 179.9° |
| C6 | N6 | N25 | H10 | 180.0° | 179.9° |
| C6 | N6 | N25 | H11 | 60.0° | 56.1° |
| N6 | N25 | H10 | H11 | 120.0° | 124.0° |
| H2 | OP1 | P | OP3 | 49.8° | 60.0° |
| H5'1 | C5' | C4' | H4' | 60.9° | 174.6° |
| H5'2 | C5' | C4' | H4' | 58.9° | 65.4° |
| H4' | C4' | C3' | H3' | 168.5° | 123.9° |
| H3' | C3' | O3' | H3 | 58.7° | 57.4° |
| H3' | C3' | C2' | H2' | 43.0° | 21.3° |
| H2' | C2' | C1' | H4 | 94.2° | 160.4° |
| H2' | C2' | O2' | H7 | 53.7° | 62.2° |
| H6 | N6 | N25 | H10 | 58.7° | 0.0° |
| H6 | N6 | N25 | H11 | 178.7° | 124.0° |
