O2G

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
P	OP3	sing	1.61Å	56.68Å
OP3	HP3	sing	0.97Å	0.00Å
OP1	HP1	sing	0.97Å	0.95Å
P	OP1	sing	1.61Å	1.49Å
P	OP2	doub	1.48Å	1.48Å
P	O5'	sing	1.61Å	1.58Å
O5'	C5'	sing	1.43Å	1.43Å
C5'	C4'	sing	1.53Å	1.53Å
C4'	O4'	sing	1.44Å	1.44Å
C4'	C3'	sing	1.55Å	1.53Å
C3'	O3'	sing	1.43Å	1.43Å
C3'	C2'	sing	1.55Å	1.53Å
O4'	C1'	sing	1.44Å	1.44Å
C2'	C1'	sing	1.54Å	1.53Å
C1'	N9	sing	1.46Å	1.48Å
N9	C8	sing	1.37Å	1.33Å	Aromatic
C8	N7	doub	1.30Å	1.33Å	Aromatic
N7	C5	sing	1.35Å	1.33Å	Aromatic
C5	C6	sing	1.41Å	1.39Å
C6	O6	doub	1.22Å	1.23Å
C6	N1	sing	1.35Å	1.40Å
N1	C2	sing	1.36Å	1.40Å
C2	N2	sing	1.37Å	1.33Å
C2	N3	doub	1.31Å	1.35Å
N9	C4	sing	1.37Å	1.33Å	Aromatic
C5	C4	doub	1.40Å	1.39Å	Aromatic
N3	C4	sing	1.34Å	1.33Å
N2	CM1	sing	1.46Å	1.47Å
N2	CM2	sing	1.46Å	1.47Å
C5'	H5'	sing	1.09Å	1.10Å
C5'	H5'A	sing	1.09Å	1.10Å
C4'	H4'	sing	1.09Å	1.10Å
C3'	H3'	sing	1.09Å	1.10Å
O3'	HO3'	sing	0.97Å	0.95Å
C2'	H2'	sing	1.09Å	1.10Å
C2'	H2'A	sing	1.09Å	1.10Å
C1'	H1'	sing	1.09Å	1.10Å
C8	H8	sing	1.08Å	1.08Å
N1	HN1	sing	0.97Å	1.00Å
CM1	HM1	sing	1.09Å	1.10Å
CM1	HM1A	sing	1.09Å	1.10Å
CM1	HM1B	sing	1.09Å	1.10Å
CM2	HM2	sing	1.09Å	1.10Å
CM2	HM2A	sing	1.09Å	1.10Å
CM2	HM2B	sing	1.09Å	1.10Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
P	OP3	HP3	90.0°	114.0°
OP3	P	OP1	83.8°	109.4°
OP3	P	OP2	157.2°	109.5°
OP3	P	O5'	59.8°	109.4°
HP1	OP1	P	109.5°	114.0°
OP1	P	OP2	118.6°	109.5°
OP1	P	O5'	109.7°	109.4°
OP2	P	O5'	105.1°	109.5°
P	O5'	C5'	121.0°	123.0°
O5'	C5'	C4'	109.9°	109.5°
O5'	C5'	H5'	109.3°	109.5°
O5'	C5'	H5'A	109.3°	109.5°
C5'	C4'	O4'	113.8°	110.6°
C5'	C4'	C3'	109.1°	110.6°
C4'	C5'	H5'	109.3°	109.5°
C4'	C5'	H5'A	109.2°	109.5°
C5'	C4'	H4'	105.7°	110.6°
O4'	C4'	C3'	105.8°	103.5°
C4'	O4'	C1'	104.1°	107.0°
O4'	C4'	H4'	109.0°	110.6°
C4'	C3'	O3'	113.4°	110.9°
C4'	C3'	C2'	103.8°	102.1°
C3'	C4'	H4'	113.7°	110.7°
C4'	C3'	H3'	110.2°	110.9°
O3'	C3'	C2'	107.8°	110.9°
O3'	C3'	H3'	106.3°	110.8°
C3'	O3'	HO3'	109.5°	114.0°
C3'	C2'	C1'	98.0°	104.2°
C2'	C3'	H3'	115.6°	111.0°
C3'	C2'	H2'	113.5°	110.5°
C3'	C2'	H2'A	115.8°	110.4°
O4'	C1'	C2'	101.6°	107.3°
O4'	C1'	N9	111.5°	109.9°
O4'	C1'	H1'	115.1°	109.9°
C2'	C1'	N9	114.3°	109.9°
C1'	C2'	H2'	113.5°	110.4°
C1'	C2'	H2'A	115.8°	110.5°
C2'	C1'	H1'	112.4°	109.8°
C1'	N9	C8	126.7°	126.3°
C1'	N9	C4	124.9°	126.3°
N9	C1'	H1'	102.6°	110.0°
N9	C8	N7	109.4°	109.8°
C8	N9	C4	108.4°	107.4°
N9	C8	H8	125.3°	125.1°
C8	N7	C5	108.2°	109.3°
N7	C8	H8	125.3°	125.1°
N7	C5	C6	133.3°	134.1°
N7	C5	C4	107.4°	107.3°
C5	C6	O6	119.9°	120.8°
C5	C6	N1	118.7°	118.4°
C6	C5	C4	119.4°	118.6°
O6	C6	N1	121.5°	120.8°
C6	N1	C2	119.5°	120.3°
C6	N1	HN1	120.2°	119.9°
N1	C2	N2	120.7°	119.0°
N1	C2	N3	119.9°	121.9°
C2	N1	HN1	120.2°	119.8°
N2	C2	N3	119.4°	119.1°
C2	N2	CM1	120.5°	120.0°
C2	N2	CM2	119.9°	120.0°
C2	N3	C4	121.4°	121.1°
N9	C4	C5	106.7°	106.1°
N9	C4	N3	132.1°	134.2°
C5	C4	N3	121.2°	119.7°
CM1	N2	CM2	119.6°	120.0°
N2	CM1	HM1	109.5°	109.4°
N2	CM1	HM1A	109.5°	109.5°
N2	CM1	HM1B	109.5°	109.5°
N2	CM2	HM2	109.5°	109.4°
N2	CM2	HM2A	109.4°	109.5°
N2	CM2	HM2B	109.5°	109.5°
H5'	C5'	H5'A	109.8°	109.5°
H2'	C2'	H2'A	101.0°	110.6°
HM1	CM1	HM1A	109.5°	109.5°
HM1	CM1	HM1B	109.5°	109.5°
HM1A	CM1	HM1B	109.5°	109.5°
HM2	CM2	HM2A	109.4°	109.5°
HM2	CM2	HM2B	109.5°	109.4°
HM2A	CM2	HM2B	109.5°	109.5°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
OP3	P	OP1	HP1	62.6°	60.1°
OP3	P	OP1	OP2	175.4°	120.0°
OP3	P	OP1	O5'	54.8°	119.9°
OP3	P	OP2	O5'	45.2°	120.0°
OP3	P	O5'	C5'	92.6°	65.0°
HP3	OP3	P	OP1	90.0°	59.9°
HP3	OP3	P	OP2	90.0°	180.0°
HP3	OP3	P	O5'	90.0°	60.0°
HP1	OP1	P	OP2	122.0°	60.0°
HP1	OP1	P	O5'	117.4°	180.0°
OP1	P	OP2	O5'	122.9°	120.0°
OP1	P	O5'	C5'	162.7°	175.0°
OP2	P	O5'	C5'	68.9°	55.0°
P	O5'	C5'	C4'	140.5°	180.0°
P	O5'	C5'	H5'	99.5°	60.0°
P	O5'	C5'	H5'A	20.7°	60.0°
O5'	C5'	C4'	H5'	120.0°	120.0°
O5'	C5'	C4'	H5'A	119.9°	120.0°
O5'	C5'	C4'	O4'	79.6°	66.5°
O5'	C5'	C4'	C3'	38.2°	179.5°
O5'	C5'	H5'	H5'A	119.8°	120.0°
O5'	C5'	C4'	H4'	160.8°	56.4°
C5'	C4'	O4'	C3'	119.7°	118.5°
C5'	C4'	O4'	H4'	117.7°	122.9°
C5'	C4'	C3'	H4'	117.6°	122.9°
C5'	C4'	C3'	O3'	126.4°	86.3°
C5'	C4'	C3'	C2'	116.9°	155.5°
C5'	C4'	O4'	C1'	145.8°	158.5°
C4'	C5'	H5'	H5'A	119.8°	120.0°
C5'	C4'	C3'	H3'	7.4°	37.2°
O4'	C4'	C3'	H4'	119.6°	118.6°
O4'	C4'	C3'	O3'	110.8°	155.2°
O4'	C4'	C3'	C2'	5.9°	37.0°
C4'	O4'	C1'	C2'	48.4°	26.5°
C4'	O4'	C1'	N9	170.5°	146.0°
O4'	C4'	C5'	H5'	160.4°	53.5°
O4'	C4'	C5'	H5'A	40.2°	173.5°
O4'	C4'	C3'	H3'	130.2°	81.2°
C4'	O4'	C1'	H1'	73.2°	92.9°
C4'	C3'	O3'	C2'	114.3°	112.7°
C4'	C3'	O3'	H3'	121.2°	123.6°
C4'	C3'	C2'	H3'	120.7°	118.2°
C3'	C4'	O4'	C1'	26.1°	40.0°
C4'	C3'	C2'	C1'	33.0°	20.9°
C3'	C4'	C5'	H5'	81.8°	60.5°
C3'	C4'	C5'	H5'A	158.1°	59.5°
C4'	C3'	O3'	HO3'	137.0°	180.0°
C4'	C3'	C2'	H2'	87.0°	139.5°
C4'	C3'	C2'	H2'A	156.8°	97.8°
O3'	C3'	C2'	H3'	118.7°	123.6°
O3'	C3'	C2'	C1'	87.6°	139.1°
O3'	C3'	C4'	H4'	8.7°	36.7°
O3'	C3'	C2'	H2'	152.4°	102.3°
O3'	C3'	C2'	H2'A	36.2°	20.4°
C3'	C2'	C1'	O4'	49.9°	2.0°
C3'	C2'	C1'	H2'	120.0°	118.7°
C3'	C2'	C1'	H2'A	123.8°	118.6°
C3'	C2'	C1'	N9	170.1°	121.5°
C2'	C3'	C4'	H4'	125.5°	81.6°
C2'	C3'	O3'	HO3'	108.6°	67.3°
C3'	C2'	H2'	H2'A	124.6°	122.6°
C3'	C2'	C1'	H1'	73.6°	117.4°
O4'	C1'	C2'	N9	120.1°	119.4°
O4'	C1'	C2'	H1'	123.5°	119.4°
O4'	C1'	N9	H1'	123.7°	121.1°
O4'	C1'	N9	C8	80.6°	23.6°
O4'	C1'	N9	C4	101.5°	156.7°
C1'	O4'	C4'	H4'	96.5°	78.6°
O4'	C1'	C2'	H2'	70.1°	116.7°
O4'	C1'	C2'	H2'A	173.8°	120.7°
C2'	C1'	N9	H1'	121.9°	121.1°
C2'	C1'	N9	C8	33.8°	94.3°
C2'	C1'	N9	C4	144.1°	85.4°
C1'	C2'	C3'	H3'	153.7°	97.3°
C1'	C2'	H2'	H2'A	124.6°	122.6°
C1'	N9	C8	C4	178.2°	179.7°
C1'	N9	C8	N7	177.8°	180.0°
C1'	N9	C4	C5	177.8°	179.9°
C1'	N9	C4	N3	2.7°	0.7°
N9	C1'	C2'	H2'	50.0°	2.8°
N9	C1'	C2'	H2'A	66.1°	119.9°
C1'	N9	C8	H8	2.2°	0.1°
N9	C8	N7	H8	180.0°	180.0°
N9	C8	N7	C5	0.2°	0.0°
C8	N9	C4	C5	0.5°	0.4°
C8	N9	C4	N3	179.1°	179.6°
C8	N9	C1'	H1'	155.7°	144.7°
C8	N7	C5	C6	179.5°	180.0°
N7	C8	N9	C4	0.4°	0.3°
C8	N7	C5	C4	0.1°	0.2°
N7	C5	C6	C4	179.3°	179.8°
N7	C5	C6	O6	2.6°	0.1°
N7	C5	C6	N1	178.9°	180.0°
N7	C5	C4	N9	0.4°	0.4°
N7	C5	C4	N3	179.3°	179.7°
C5	N7	C8	H8	179.8°	180.0°
C5	C6	O6	N1	178.5°	179.9°
C5	C6	N1	C2	0.4°	0.1°
C6	C5	C4	N9	179.8°	179.8°
C6	C5	C4	N3	0.2°	0.5°
C5	C6	N1	HN1	179.5°	180.0°
O6	C6	N1	C2	178.1°	180.0°
O6	C6	C5	C4	178.1°	179.7°
O6	C6	N1	HN1	2.0°	0.1°
C6	N1	C2	HN1	180.0°	179.9°
C6	N1	C2	N2	178.7°	180.0°
C6	N1	C2	N3	0.3°	0.1°
N1	C6	C5	C4	0.4°	0.2°
N1	C2	N2	N3	179.0°	180.0°
N1	C2	N3	C4	0.1°	0.2°
N1	C2	N2	CM1	177.9°	174.4°
N1	C2	N2	CM2	0.2°	5.5°
N2	C2	N3	C4	178.9°	179.7°
C2	N2	CM1	CM2	178.1°	180.0°
N2	C2	N1	HN1	1.3°	0.1°
C2	N2	CM1	HM1	68.0°	90.0°
C2	N2	CM1	HM1A	52.0°	150.0°
C2	N2	CM1	HM1B	172.0°	30.0°
C2	N2	CM2	HM2	123.9°	5.0°
C2	N2	CM2	HM2A	116.2°	125.0°
C2	N2	CM2	HM2B	3.8°	114.9°
C2	N3	C4	N9	179.5°	179.6°
C2	N3	C4	C5	0.0°	0.5°
N3	C2	N2	CM1	1.1°	5.5°
N3	C2	N2	CM2	179.2°	174.5°
N3	C2	N1	HN1	179.7°	180.0°
N9	C4	C5	N3	179.6°	179.3°
C4	N9	C1'	H1'	22.2°	35.7°
C4	N9	C8	H8	179.6°	179.8°
N2	CM1	HM1	HM1A	120.0°	120.0°
N2	CM1	HM1	HM1B	120.0°	120.0°
N2	CM1	HM1A	HM1B	120.0°	120.1°
CM1	N2	CM2	HM2	54.3°	174.9°
CM1	N2	CM2	HM2A	65.7°	54.9°
CM1	N2	CM2	HM2B	174.3°	65.1°
CM2	N2	CM1	HM1	110.1°	90.0°
CM2	N2	CM1	HM1A	129.9°	29.9°
CM2	N2	CM1	HM1B	9.9°	150.0°
N2	CM2	HM2	HM2A	120.0°	120.0°
N2	CM2	HM2	HM2B	120.0°	120.0°
N2	CM2	HM2A	HM2B	120.0°	120.1°
H5'	C5'	C4'	H4'	40.9°	176.4°
H5'A	C5'	C4'	H4'	79.3°	63.5°
H4'	C4'	C3'	H3'	110.2°	160.2°
H3'	C3'	O3'	HO3'	15.8°	56.4°
H3'	C3'	C2'	H2'	33.7°	21.3°
H3'	C3'	C2'	H2'A	82.5°	144.0°
H2'	C2'	C1'	H1'	166.4°	124.0°
H2'A	C2'	C1'	H1'	50.3°	1.3°
HM1	CM1	HM1A	HM1B	120.0°	120.0°
HM2	CM2	HM2A	HM2B	120.0°	120.0°

Definition date:	2009-01-22
Last modified:	2011-06-04
Release status:	REL
Processing site:	EBI