O2C

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
P	O1P	doub	1.50Å	1.47Å
P	O2P	sing	1.62Å	1.49Å
P	O5'	sing	1.62Å	1.59Å
P	O3P	sing	1.62Å	26.48Å
O2P	HOP2	sing	0.98Å	0.95Å
O5'	C5'	sing	1.42Å	1.43Å
C5'	C4'	sing	1.52Å	1.51Å
C5'	H5'1	sing	1.09Å	1.10Å
C5'	H5'2	sing	1.09Å	1.10Å
C4'	O4'	sing	1.44Å	1.45Å
C4'	C3'	sing	1.52Å	1.52Å
C4'	H4'	sing	1.09Å	1.10Å
O4'	C1'	sing	1.43Å	1.42Å
C1'	N1	sing	1.44Å	1.48Å
C1'	C2'	sing	1.52Å	1.53Å
C1'	H1'	sing	1.10Å	1.10Å
N1	C6	sing	1.39Å	1.37Å
N1	C2	sing	1.42Å	1.40Å
C6	C5	doub	1.33Å	1.34Å
C6	H6	sing	1.08Å	1.08Å
C2	O2	doub	1.23Å	1.23Å
C2	N3	sing	1.38Å	1.35Å
N3	C4	doub	1.31Å	1.33Å
C4	N4	sing	1.38Å	1.33Å
C4	C5	sing	1.49Å	1.42Å
N4	HN41	sing	0.99Å	1.00Å
N4	HN42	sing	0.99Å	1.00Å
C5	H5	sing	1.08Å	1.08Å
C2'	O2'	sing	1.41Å	1.42Å
C2'	C3'	sing	1.51Å	1.52Å
C2'	H2'	sing	1.10Å	1.10Å
O2'	HO'2	sing	0.97Å	0.95Å
C3'	H3'1	sing	1.10Å	1.10Å
C3'	H3'2	sing	1.10Å	1.10Å
O3P	HOP3	sing	0.98Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
O1P	P	O2P	119.6°	115.3°
O1P	P	O5'	109.1°	115.0°
O1P	P	O3P	125.2°	115.0°
O2P	P	O5'	107.8°	103.8°
O2P	P	O3P	62.8°	103.3°
P	O2P	HOP2	109.5°	119.0°
O5'	P	O3P	122.2°	102.9°
P	O5'	C5'	121.0°	118.4°
P	O3P	HOP3	125.2°	118.9°
O5'	C5'	C4'	110.1°	108.9°
O5'	C5'	H5'1	109.1°	108.9°
O5'	C5'	H5'2	109.3°	109.0°
C4'	C5'	H5'1	109.1°	110.4°
C4'	C5'	H5'2	109.2°	110.3°
C5'	C4'	O4'	109.4°	108.5°
C5'	C4'	C3'	115.2°	113.2°
C5'	C4'	H4'	104.0°	108.9°
H5'1	C5'	H5'2	110.0°	109.3°
O4'	C4'	C3'	103.9°	106.2°
O4'	C4'	H4'	115.3°	108.6°
C4'	O4'	C1'	109.6°	109.0°
C3'	C4'	H4'	109.4°	111.3°
C4'	C3'	C2'	101.7°	102.7°
C4'	C3'	H3'1	113.8°	110.3°
C4'	C3'	H3'2	112.1°	113.9°
O4'	C1'	N1	108.7°	109.0°
O4'	C1'	C2'	107.3°	107.1°
O4'	C1'	H1'	113.4°	108.6°
N1	C1'	C2'	114.7°	112.6°
N1	C1'	H1'	105.8°	107.1°
C1'	N1	C6	121.2°	118.6°
C1'	N1	C2	118.6°	122.0°
C2'	C1'	H1'	107.1°	112.3°
C1'	C2'	O2'	109.2°	111.3°
C1'	C2'	C3'	101.4°	102.0°
C1'	C2'	H2'	115.6°	112.0°
C6	N1	C2	120.2°	119.4°
N1	C6	C5	121.0°	122.7°
N1	C6	H6	119.5°	116.1°
N1	C2	O2	119.0°	121.0°
N1	C2	N3	119.4°	118.8°
C5	C6	H6	119.5°	121.2°
C6	C5	C4	117.4°	116.3°
C6	C5	H5	121.3°	123.1°
O2	C2	N3	121.6°	120.2°
C2	N3	C4	120.0°	121.1°
N3	C4	N4	117.9°	120.1°
N3	C4	C5	121.9°	121.7°
N4	C4	C5	120.2°	118.2°
C4	N4	HN41	124.9°	118.1°
C4	N4	HN42	110.1°	118.1°
C4	C5	H5	121.3°	120.5°
HN41	N4	HN42	124.9°	123.9°
O2'	C2'	C3'	112.0°	112.0°
O2'	C2'	H2'	105.8°	108.9°
C2'	O2'	HO'2	109.5°	106.6°
C3'	C2'	H2'	113.0°	110.7°
C2'	C3'	H3'1	113.8°	109.8°
C2'	C3'	H3'2	112.1°	113.2°
H3'1	C3'	H3'2	103.7°	107.0°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O1P	P	O2P	O5'	125.4°	126.7°
O1P	P	O2P	O3P	116.9°	126.3°
O1P	P	O5'	O3P	160.0°	125.8°
O1P	P	O2P	HOP2	79.5°	48.8°
O1P	P	O5'	C5'	39.4°	180.0°
O1P	P	O3P	HOP3	180.0°	48.0°
O2P	P	O5'	O3P	68.6°	107.4°
O2P	P	O5'	C5'	170.8°	53.2°
O2P	P	O3P	HOP3	71.5°	78.5°
O5'	P	O2P	HOP2	155.2°	175.4°
P	O5'	C5'	C4'	172.4°	180.0°
P	O5'	C5'	H5'1	67.8°	59.6°
P	O5'	C5'	H5'2	52.4°	59.6°
O5'	P	O3P	HOP3	23.3°	173.8°
O3P	P	O2P	HOP2	37.5°	77.5°
O3P	P	O5'	C5'	120.6°	54.2°
O5'	C5'	C4'	H5'1	119.7°	119.5°
O5'	C5'	C4'	H5'2	120.0°	119.6°
O5'	C5'	H5'1	H5'2	119.8°	119.0°
O5'	C5'	C4'	O4'	66.5°	61.9°
O5'	C5'	C4'	C3'	50.1°	179.5°
O5'	C5'	C4'	H4'	169.9°	56.2°
C4'	C5'	H5'1	H5'2	119.8°	121.5°
C5'	C4'	O4'	C3'	123.6°	121.9°
C5'	C4'	O4'	H4'	116.7°	118.2°
C5'	C4'	C3'	H4'	116.7°	123.0°
C5'	C4'	O4'	C1'	146.5°	108.8°
C5'	C4'	C3'	C2'	157.5°	88.1°
C5'	C4'	C3'	H3'1	79.7°	154.9°
C5'	C4'	C3'	H3'2	37.5°	34.6°
H5'1	C5'	C4'	O4'	53.3°	57.6°
H5'1	C5'	C4'	C3'	169.8°	60.0°
H5'1	C5'	C4'	H4'	70.4°	175.7°
H5'2	C5'	C4'	O4'	173.5°	178.5°
H5'2	C5'	C4'	C3'	69.9°	60.9°
H5'2	C5'	C4'	H4'	49.8°	63.4°
O4'	C4'	C3'	H4'	123.7°	118.1°
C4'	O4'	C1'	N1	123.0°	132.1°
C4'	O4'	C1'	C2'	1.6°	10.0°
C4'	O4'	C1'	H1'	119.7°	111.5°
O4'	C4'	C3'	C2'	37.9°	30.8°
O4'	C4'	C3'	H3'1	160.6°	86.2°
O4'	C4'	C3'	H3'2	82.1°	153.5°
C3'	C4'	O4'	C1'	22.9°	13.1°
C4'	C3'	C2'	C1'	37.7°	35.5°
C4'	C3'	C2'	O2'	78.5°	154.5°
C4'	C3'	C2'	H3'1	122.8°	117.3°
C4'	C3'	C2'	H3'2	120.0°	123.2°
C4'	C3'	C2'	H2'	162.2°	83.8°
C4'	C3'	H3'1	H3'2	122.0°	124.4°
H4'	C4'	O4'	C1'	96.8°	132.9°
H4'	C4'	C3'	C2'	85.8°	148.9°
H4'	C4'	C3'	H3'1	37.0°	31.9°
H4'	C4'	C3'	H3'2	154.2°	88.4°
O4'	C1'	N1	C2'	120.1°	118.7°
O4'	C1'	N1	H1'	122.1°	117.3°
O4'	C1'	C2'	H1'	122.1°	119.1°
O4'	C1'	N1	C6	26.6°	32.7°
O4'	C1'	N1	C2	152.6°	147.3°
O4'	C1'	C2'	O2'	93.2°	148.4°
O4'	C1'	C2'	C3'	25.1°	28.8°
O4'	C1'	C2'	H2'	147.7°	89.5°
N1	C1'	C2'	H1'	117.1°	121.1°
C1'	N1	C6	C2	179.2°	180.0°
C1'	N1	C6	C5	177.4°	180.0°
C1'	N1	C6	H6	2.6°	0.0°
C1'	N1	C2	O2	3.2°	0.1°
C1'	N1	C2	N3	176.9°	180.0°
N1	C1'	C2'	O2'	145.9°	91.8°
N1	C1'	C2'	C3'	95.7°	148.6°
N1	C1'	C2'	H2'	26.9°	30.3°
C2'	C1'	N1	C6	93.5°	86.0°
C2'	C1'	N1	C2	87.3°	94.0°
C1'	C2'	O2'	C3'	111.5°	113.4°
C1'	C2'	O2'	H2'	125.0°	123.9°
C1'	C2'	C3'	H2'	124.4°	119.2°
C1'	C2'	O2'	HO'2	112.3°	128.3°
C1'	C2'	C3'	H3'1	160.5°	81.9°
C1'	C2'	C3'	H3'2	82.2°	158.6°
H1'	C1'	N1	C6	148.7°	150.0°
H1'	C1'	N1	C2	30.6°	30.0°
H1'	C1'	C2'	O2'	28.9°	29.3°
H1'	C1'	C2'	C3'	147.2°	90.3°
H1'	C1'	C2'	H2'	90.2°	151.4°
N1	C6	C5	H6	180.0°	179.9°
C6	N1	C2	O2	177.5°	179.9°
C6	N1	C2	N3	2.3°	0.0°
N1	C6	C5	C4	0.2°	0.0°
N1	C6	C5	H5	179.8°	180.0°
C2	N1	C6	C5	1.8°	0.0°
C2	N1	C6	H6	178.2°	180.0°
N1	C2	O2	N3	179.8°	179.9°
N1	C2	N3	C4	0.7°	0.0°
C6	C5	C4	N3	1.9°	0.1°
C6	C5	C4	N4	177.4°	180.0°
C6	C5	C4	H5	180.0°	180.0°
H6	C6	C5	C4	179.8°	180.0°
H6	C6	C5	H5	0.2°	0.0°
O2	C2	N3	C4	179.2°	179.9°
C2	N3	C4	N4	177.9°	180.0°
C2	N3	C4	C5	1.4°	0.1°
N3	C4	N4	C5	179.3°	179.9°
N3	C4	N4	HN41	0.0°	120.6°
N3	C4	N4	HN42	180.0°	59.4°
N3	C4	C5	H5	178.1°	179.9°
C4	N4	HN41	HN42	180.0°	180.0°
N4	C4	C5	H5	2.6°	0.0°
C5	C4	N4	HN41	179.3°	59.4°
C5	C4	N4	HN42	0.7°	120.6°
O2'	C2'	C3'	H2'	119.3°	121.7°
O2'	C2'	C3'	H3'1	44.2°	37.2°
O2'	C2'	C3'	H3'2	161.5°	82.3°
C3'	C2'	O2'	HO'2	136.2°	14.9°
C2'	C3'	H3'1	H3'2	122.1°	123.2°
H2'	C2'	O2'	HO'2	12.7°	107.8°
H2'	C2'	C3'	H3'1	75.1°	158.9°
H2'	C2'	C3'	H3'2	42.2°	39.4°

Definition date:	2005-10-31
Last modified:	2011-06-04
Release status:	REL
Processing site:	RCSB