NYM
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| N1 | C6 | sing | 1.37Å | 1.36Å | |
| N1 | C2 | sing | 1.35Å | 1.42Å | |
| N1 | C1' | sing | 1.46Å | 1.51Å | |
| C6 | C5 | doub | 1.35Å | 1.34Å | |
| C6 | HC61 | sing | 1.08Å | 1.10Å | |
| C2 | O2 | doub | 1.22Å | 1.23Å | |
| C2 | N3 | sing | 1.35Å | 1.35Å | |
| N3 | C4 | sing | 1.35Å | 1.40Å | |
| N3 | HN31 | sing | 0.97Å | 1.02Å | |
| C4 | O4 | doub | 1.22Å | 1.34Å | |
| C4 | C5 | sing | 1.42Å | 1.49Å | |
| C5 | C7 | sing | 1.51Å | 1.54Å | |
| C7 | HC71 | sing | 1.09Å | 1.12Å | |
| C7 | HC72 | sing | 1.09Å | 1.12Å | |
| C7 | HC73 | sing | 1.09Å | 1.12Å | |
| O4' | C1' | sing | 1.44Å | 1.36Å | |
| O4' | C4' | sing | 1.45Å | 1.42Å | |
| N3' | C3' | sing | 1.47Å | 1.53Å | |
| N3' | H3'1 | sing | 1.01Å | 1.02Å | |
| N3' | H3'2 | sing | 1.01Å | 1.02Å | |
| C1' | C2' | sing | 1.54Å | 1.54Å | |
| C1' | H1'1 | sing | 1.09Å | 1.11Å | |
| C2' | C3' | sing | 1.55Å | 1.52Å | |
| C2' | H2'1 | sing | 1.09Å | 1.11Å | |
| C2' | H2'2 | sing | 1.09Å | 1.12Å | |
| C3' | C4' | sing | 1.55Å | 1.53Å | |
| C3' | HC31 | sing | 1.09Å | 1.12Å | |
| C4' | C5' | sing | 1.53Å | 1.57Å | |
| C4' | H4'1 | sing | 1.09Å | 1.11Å | |
| O5' | C5' | sing | 1.43Å | 1.46Å | |
| O5' | P1 | sing | 1.61Å | 1.62Å | |
| C5' | H5'1 | sing | 1.09Å | 1.12Å | |
| C5' | H5'2 | sing | 1.09Å | 1.11Å | |
| P1 | OP2 | sing | 1.61Å | 1.49Å | |
| P1 | OP1 | doub | 1.48Å | 1.46Å | |
| P1 | OP3 | sing | 1.61Å | 1.65Å | |
| OP2 | HP31 | sing | 0.97Å | 0.95Å | |
| OP3 | HP21 | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| C6 | N1 | C2 | 124.4° | 120.6° |
| C6 | N1 | C1' | 117.0° | 119.7° |
| N1 | C6 | C5 | 120.8° | 119.7° |
| N1 | C6 | HC61 | 120.3° | 120.1° |
| C2 | N1 | C1' | 118.0° | 119.7° |
| N1 | C2 | O2 | 120.1° | 119.5° |
| N1 | C2 | N3 | 115.4° | 120.9° |
| N1 | C1' | O4' | 104.9° | 109.9° |
| N1 | C1' | C2' | 115.0° | 109.9° |
| N1 | C1' | H1'1 | 107.0° | 109.9° |
| C5 | C6 | HC61 | 118.9° | 120.2° |
| C6 | C5 | C4 | 118.1° | 119.1° |
| C6 | C5 | C7 | 128.3° | 120.4° |
| O2 | C2 | N3 | 124.4° | 119.6° |
| C2 | N3 | C4 | 123.4° | 120.3° |
| C2 | N3 | HN31 | 116.4° | 119.8° |
| C4 | N3 | HN31 | 120.1° | 119.9° |
| N3 | C4 | O4 | 115.6° | 120.3° |
| N3 | C4 | C5 | 117.7° | 119.4° |
| O4 | C4 | C5 | 126.6° | 120.3° |
| C4 | C5 | C7 | 113.6° | 120.5° |
| C5 | C7 | HC71 | 128.3° | 109.5° |
| C5 | C7 | HC72 | 105.6° | 109.4° |
| C5 | C7 | HC73 | 105.6° | 109.5° |
| HC71 | C7 | HC72 | 105.6° | 109.5° |
| HC71 | C7 | HC73 | 105.6° | 109.5° |
| HC72 | C7 | HC73 | 103.7° | 109.5° |
| C1' | O4' | C4' | 110.0° | 106.9° |
| O4' | C1' | C2' | 102.9° | 107.4° |
| O4' | C1' | H1'1 | 118.4° | 109.9° |
| O4' | C4' | C3' | 106.8° | 103.6° |
| O4' | C4' | C5' | 116.5° | 110.8° |
| O4' | C4' | H4'1 | 106.6° | 110.5° |
| C3' | N3' | H3'1 | 106.1° | 106.7° |
| C3' | N3' | H3'2 | 113.4° | 106.7° |
| N3' | C3' | C2' | 106.1° | 110.9° |
| N3' | C3' | C4' | 104.2° | 111.0° |
| N3' | C3' | HC31 | 112.7° | 110.8° |
| H3'1 | N3' | H3'2 | 113.5° | 106.7° |
| C2' | C1' | H1'1 | 108.9° | 109.8° |
| C1' | C2' | C3' | 104.6° | 104.2° |
| C1' | C2' | H2'1 | 114.1° | 110.5° |
| C1' | C2' | H2'2 | 114.0° | 110.5° |
| C3' | C2' | H2'1 | 114.0° | 110.5° |
| C3' | C2' | H2'2 | 114.0° | 110.5° |
| C2' | C3' | C4' | 102.3° | 102.1° |
| C2' | C3' | HC31 | 114.3° | 110.9° |
| H2'1 | C2' | H2'2 | 96.4° | 110.6° |
| C4' | C3' | HC31 | 116.0° | 110.9° |
| C3' | C4' | C5' | 109.7° | 110.6° |
| C3' | C4' | H4'1 | 113.9° | 110.6° |
| C5' | C4' | H4'1 | 103.5° | 110.6° |
| C4' | C5' | O5' | 104.1° | 109.5° |
| C4' | C5' | H5'1 | 114.3° | 109.5° |
| C4' | C5' | H5'2 | 114.3° | 109.5° |
| C5' | O5' | P1 | 123.8° | 106.8° |
| O5' | C5' | H5'1 | 114.2° | 109.4° |
| O5' | C5' | H5'2 | 114.2° | 109.5° |
| O5' | P1 | OP2 | 116.1° | 109.5° |
| O5' | P1 | OP1 | 102.2° | 109.5° |
| O5' | P1 | OP3 | 95.1° | 109.5° |
| H5'1 | C5' | H5'2 | 96.2° | 109.5° |
| OP2 | P1 | OP1 | 125.6° | 109.5° |
| OP2 | P1 | OP3 | 95.4° | 109.5° |
| P1 | OP2 | HP31 | 116.1° | 106.8° |
| OP1 | P1 | OP3 | 119.1° | 109.5° |
| P1 | OP3 | HP21 | 95.1° | 106.8° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| C6 | N1 | C2 | C1' | 171.5° | 179.9° |
| N1 | C6 | C5 | HC61 | 180.0° | 179.9° |
| C6 | N1 | C2 | O2 | 178.3° | 179.9° |
| C6 | N1 | C2 | N3 | 5.0° | 0.1° |
| N1 | C6 | C5 | C4 | 1.7° | 0.3° |
| N1 | C6 | C5 | C7 | 178.4° | 180.0° |
| C6 | N1 | C1' | O4' | 52.2° | 126.8° |
| C6 | N1 | C1' | C2' | 60.1° | 115.2° |
| C6 | N1 | C1' | H1'1 | 178.8° | 5.7° |
| C2 | N1 | C6 | C5 | 4.0° | 0.1° |
| C2 | N1 | C6 | HC61 | 176.0° | 180.0° |
| N1 | C2 | O2 | N3 | 176.4° | 180.0° |
| N1 | C2 | N3 | C4 | 3.8° | 0.3° |
| N1 | C2 | N3 | HN31 | 176.2° | 180.0° |
| C2 | N1 | C1' | O4' | 119.9° | 53.3° |
| C2 | N1 | C1' | C2' | 127.8° | 64.7° |
| C2 | N1 | C1' | H1'1 | 6.7° | 174.3° |
| C1' | N1 | C6 | C5 | 175.6° | 180.0° |
| C1' | N1 | C6 | HC61 | 4.4° | 0.1° |
| C1' | N1 | C2 | O2 | 6.8° | 0.0° |
| C1' | N1 | C2 | N3 | 176.4° | 180.0° |
| N1 | C1' | O4' | C2' | 120.6° | 119.5° |
| N1 | C1' | O4' | H1'1 | 119.2° | 121.0° |
| N1 | C1' | O4' | C4' | 158.5° | 145.8° |
| N1 | C1' | C2' | H1'1 | 120.1° | 121.0° |
| N1 | C1' | C2' | C3' | 145.6° | 121.5° |
| N1 | C1' | C2' | H2'1 | 89.1° | 119.9° |
| N1 | C1' | C2' | H2'2 | 20.3° | 2.8° |
| C6 | C5 | C4 | N3 | 0.6° | 0.5° |
| C6 | C5 | C4 | O4 | 178.2° | 180.0° |
| C6 | C5 | C4 | C7 | 179.9° | 179.7° |
| C6 | C5 | C7 | HC71 | 180.0° | 90.1° |
| C6 | C5 | C7 | HC72 | 54.7° | 150.0° |
| C6 | C5 | C7 | HC73 | 54.7° | 30.0° |
| HC61 | C6 | C5 | C4 | 178.3° | 179.8° |
| HC61 | C6 | C5 | C7 | 1.6° | 0.1° |
| O2 | C2 | N3 | C4 | 179.6° | 179.7° |
| O2 | C2 | N3 | HN31 | 0.4° | 0.0° |
| C2 | N3 | C4 | HN31 | 180.0° | 179.7° |
| C2 | N3 | C4 | O4 | 177.1° | 180.0° |
| C2 | N3 | C4 | C5 | 1.9° | 0.5° |
| N3 | C4 | O4 | C5 | 178.8° | 179.5° |
| N3 | C4 | C5 | C7 | 179.5° | 179.8° |
| HN31 | N3 | C4 | O4 | 2.9° | 0.3° |
| HN31 | N3 | C4 | C5 | 178.1° | 179.8° |
| O4 | C4 | C5 | C7 | 1.7° | 0.3° |
| C4 | C5 | C7 | HC71 | 0.1° | 90.3° |
| C4 | C5 | C7 | HC72 | 125.2° | 29.7° |
| C4 | C5 | C7 | HC73 | 125.4° | 149.7° |
| C5 | C7 | HC71 | HC72 | 125.3° | 119.9° |
| C5 | C7 | HC71 | HC73 | 125.3° | 120.0° |
| C5 | C7 | HC72 | HC73 | 110.9° | 120.0° |
| HC71 | C7 | HC72 | HC73 | 110.8° | 120.1° |
| O4' | C1' | C2' | H1'1 | 126.5° | 119.5° |
| O4' | C1' | C2' | C3' | 32.2° | 1.9° |
| O4' | C1' | C2' | H2'1 | 157.5° | 120.6° |
| O4' | C1' | C2' | H2'2 | 93.1° | 116.7° |
| C1' | O4' | C4' | C3' | 28.7° | 39.9° |
| C1' | O4' | C4' | C5' | 151.7° | 158.5° |
| C1' | O4' | C4' | H4'1 | 93.4° | 78.6° |
| O4' | C4' | C3' | N3' | 116.3° | 155.2° |
| C4' | O4' | C1' | C2' | 37.8° | 26.3° |
| C4' | O4' | C1' | H1'1 | 82.3° | 93.2° |
| O4' | C4' | C3' | C2' | 6.0° | 36.9° |
| O4' | C4' | C3' | C5' | 127.1° | 118.8° |
| O4' | C4' | C3' | H4'1 | 117.4° | 118.4° |
| O4' | C4' | C3' | HC31 | 119.1° | 81.2° |
| O4' | C4' | C5' | H4'1 | 116.7° | 122.8° |
| O4' | C4' | C5' | O5' | 84.8° | 70.7° |
| O4' | C4' | C5' | H5'1 | 40.4° | 169.3° |
| O4' | C4' | C5' | H5'2 | 149.9° | 49.3° |
| C3' | N3' | H3'1 | H3'2 | 125.2° | 113.9° |
| N3' | C3' | C2' | C1' | 93.8° | 139.1° |
| N3' | C3' | C2' | C4' | 108.9° | 118.3° |
| N3' | C3' | C2' | HC31 | 124.9° | 123.5° |
| N3' | C3' | C2' | H2'1 | 31.5° | 20.5° |
| N3' | C3' | C2' | H2'2 | 140.9° | 102.2° |
| N3' | C3' | C4' | HC31 | 124.5° | 123.6° |
| N3' | C3' | C4' | C5' | 116.6° | 86.1° |
| N3' | C3' | C4' | H4'1 | 1.1° | 36.8° |
| H3'1 | N3' | C3' | C2' | 180.0° | 61.4° |
| H3'1 | N3' | C3' | C4' | 72.5° | 174.1° |
| H3'1 | N3' | C3' | HC31 | 54.1° | 62.2° |
| H3'2 | N3' | C3' | C2' | 54.8° | 175.2° |
| H3'2 | N3' | C3' | C4' | 162.3° | 72.0° |
| H3'2 | N3' | C3' | HC31 | 71.1° | 51.7° |
| C1' | C2' | C3' | H2'1 | 125.3° | 118.7° |
| C1' | C2' | C3' | H2'2 | 125.3° | 118.7° |
| C1' | C2' | H2'1 | H2'2 | 119.9° | 122.7° |
| C1' | C2' | C3' | C4' | 15.1° | 20.9° |
| C1' | C2' | C3' | HC31 | 141.3° | 97.3° |
| H1'1 | C1' | C2' | C3' | 94.3° | 117.5° |
| H1'1 | C1' | C2' | H2'1 | 31.0° | 1.1° |
| H1'1 | C1' | C2' | H2'2 | 140.4° | 123.8° |
| C3' | C2' | H2'1 | H2'2 | 119.9° | 122.6° |
| C2' | C3' | C4' | HC31 | 125.1° | 118.2° |
| C2' | C3' | C4' | C5' | 133.1° | 155.7° |
| C2' | C3' | C4' | H4'1 | 111.4° | 81.5° |
| H2'1 | C2' | C3' | C4' | 140.4° | 97.8° |
| H2'1 | C2' | C3' | HC31 | 93.4° | 144.0° |
| H2'2 | C2' | C3' | C4' | 110.2° | 139.5° |
| H2'2 | C2' | C3' | HC31 | 16.0° | 21.3° |
| C3' | C4' | C5' | H4'1 | 121.9° | 122.9° |
| C3' | C4' | C5' | O5' | 36.6° | 175.0° |
| C3' | C4' | C5' | H5'1 | 161.8° | 55.0° |
| C3' | C4' | C5' | H5'2 | 88.7° | 65.0° |
| HC31 | C3' | C4' | C5' | 7.9° | 37.5° |
| HC31 | C3' | C4' | H4'1 | 123.4° | 160.4° |
| C4' | C5' | O5' | H5'1 | 125.3° | 120.0° |
| C4' | C5' | O5' | H5'2 | 125.3° | 120.0° |
| C4' | C5' | O5' | P1 | 157.9° | 180.0° |
| C4' | C5' | H5'1 | H5'2 | 120.2° | 120.0° |
| H4'1 | C4' | C5' | O5' | 158.5° | 52.1° |
| H4'1 | C4' | C5' | H5'1 | 76.3° | 67.9° |
| H4'1 | C4' | C5' | H5'2 | 33.2° | 172.1° |
| O5' | C5' | H5'1 | H5'2 | 120.1° | 120.0° |
| C5' | O5' | P1 | OP2 | 43.7° | 175.0° |
| C5' | O5' | P1 | OP1 | 176.0° | 55.0° |
| C5' | O5' | P1 | OP3 | 54.8° | 65.1° |
| P1 | O5' | C5' | H5'1 | 76.8° | 60.0° |
| P1 | O5' | C5' | H5'2 | 32.6° | 60.0° |
| O5' | P1 | OP2 | OP1 | 129.8° | 120.0° |
| O5' | P1 | OP2 | OP3 | 98.3° | 120.0° |
| O5' | P1 | OP1 | OP3 | 102.9° | 120.0° |
| O5' | P1 | OP2 | HP31 | 180.0° | 179.9° |
| O5' | P1 | OP3 | HP21 | 180.0° | 60.0° |
| OP2 | P1 | OP1 | OP3 | 122.0° | 120.0° |
| OP2 | P1 | OP3 | HP21 | 63.1° | 59.9° |
| OP1 | P1 | OP2 | HP31 | 50.2° | 60.1° |
| OP1 | P1 | OP3 | HP21 | 73.0° | 179.9° |
| OP3 | P1 | OP2 | HP31 | 81.6° | 60.0° |
