Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

NYL

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C1C2doub1.39Å1.40ÅAromatic
C1C3sing1.39Å1.39ÅAromatic
C1N4sing1.40Å1.41Å
C2C5sing1.38Å1.40ÅAromatic
C2HC2sing1.08Å1.10Å
C3C6doub1.38Å1.39ÅAromatic
C3HC3sing1.08Å1.10Å
N4C13sing1.46Å1.47Å
N4HN4sing0.97Å1.02Å
C5C7doub1.38Å1.39ÅAromatic
C5HC5sing1.08Å1.10Å
C6C7sing1.38Å1.39ÅAromatic
C6HC6sing1.08Å1.10Å
C7HC7sing1.08Å1.10Å
C13C15sing1.51Å1.52Å
C13H131sing1.09Å1.11Å
C13H132sing1.09Å1.11Å
C15C16doub1.31Å1.32Å
C15H15sing1.08Å1.10Å
C16H161sing1.08Å1.10Å
C16H162sing1.08Å1.10Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C2C1C3118.9°119.8°
C2C1N4122.3°120.1°
C1C2C5120.8°119.9°
C1C2HC2119.7°120.1°
C3C1N4118.8°120.1°
C1C3C6120.0°120.0°
C1C3HC3119.8°120.0°
C1N4C13118.8°120.0°
C1N4HN4108.9°120.0°
C5C2HC2119.5°120.0°
C2C5C7120.2°120.0°
C2C5HC5120.1°120.0°
C6C3HC3120.2°120.0°
C3C6C7121.5°120.1°
C3C6HC6119.3°119.9°
C13N4HN4108.8°120.0°
N4C13C15111.9°109.5°
N4C13H131111.3°109.5°
N4C13H132111.3°109.5°
C7C5HC5119.7°120.0°
C5C7C6118.6°120.2°
C5C7HC7120.6°119.9°
C7C6HC6119.3°120.0°
C6C7HC7120.8°119.9°
C15C13H131111.3°109.4°
C15C13H132111.3°109.5°
C13C15C16121.3°120.0°
C13C15H15126.5°120.0°
H131C13H13299.1°109.4°
C16C15H15112.2°120.0°
C15C16H161121.3°120.1°
C15C16H162112.2°119.9°
H161C16H162126.6°120.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C2C1C3N4179.9°179.7°
C1C2C5HC2180.0°180.0°
C2C1C3C60.1°0.5°
C2C1C3HC3179.9°179.9°
C2C1N4C132.9°179.9°
C2C1N4HN4128.2°0.0°
C1C2C5C70.5°0.0°
C1C2C5HC5179.5°179.9°
C3C1C2C50.4°0.3°
C3C1C2HC2179.6°179.8°
C1C3C6HC3180.0°179.6°
C3C1N4C13176.9°0.2°
C3C1N4HN451.6°179.7°
C1C3C6C70.0°0.5°
C1C3C6HC6179.9°179.7°
N4C1C2C5179.8°180.0°
N4C1C2HC20.2°0.0°
N4C1C3C6179.9°179.8°
N4C1C3HC30.1°0.2°
C1N4C13HN4125.3°179.9°
C1N4C13C15121.0°180.0°
C1N4C13H1314.3°60.0°
C1N4C13H132113.8°60.0°
C2C5C7HC5180.0°179.9°
C2C5C7C60.4°0.0°
C2C5C7HC7179.6°179.9°
HC2C2C5C7179.5°180.0°
HC2C2C5HC50.5°0.1°
C3C6C7C50.1°0.2°
C3C6C7HC6180.0°179.8°
C3C6C7HC7179.9°179.8°
HC3C3C6C7179.9°180.0°
HC3C3C6HC60.1°0.2°
N4C13C15H131125.2°120.1°
N4C13C15H132125.2°120.0°
N4C13H131H132117.2°120.0°
N4C13C15C16134.9°120.0°
N4C13C15H1545.1°60.0°
HN4N4C13C15113.8°0.0°
HN4N4C13H131121.0°120.0°
HN4N4C13H13211.5°120.0°
C5C7C6HC7180.0°179.9°
C5C7C6HC6179.9°180.0°
HC5C5C7C6179.6°179.9°
HC5C5C7HC70.4°0.0°
HC6C6C7HC70.1°0.0°
C15C13H131H132117.2°119.9°
C13C15C16H15180.0°180.0°
C13C15C16H161180.0°180.0°
C13C15C16H1620.0°0.2°
H131C13C15C169.7°120.0°
H131C13C15H15170.3°60.0°
H132C13C15C1699.9°0.1°
H132C13C15H1580.2°180.0°
C15C16H161H162180.0°179.7°
H15C15C16H1610.0°0.0°
H15C15C16H162180.0°179.7°

226262

PDB entries from 2024-10-16

PDB statisticsPDBj update infoContact PDBjnumon