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Summary Geometry Related PDB entries

NVA

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
N	CA	sing	1.47Å	1.45Å
N	H	sing	1.01Å	1.02Å
N	H2	sing	1.01Å	1.02Å
CA	CB	sing	1.53Å	1.54Å
CA	C	sing	1.51Å	1.52Å
CA	HA	sing	1.09Å	1.12Å
CB	CG	sing	1.53Å	1.56Å
CB	HB2	sing	1.09Å	1.12Å
CB	HB3	sing	1.09Å	1.12Å
CG	CD	sing	1.53Å	1.51Å
CG	HG2	sing	1.09Å	1.12Å
CG	HG3	sing	1.09Å	1.11Å
CD	HD1	sing	1.09Å	1.11Å
CD	HD2	sing	1.09Å	1.11Å
CD	HD3	sing	1.09Å	1.12Å
C	O	doub	1.21Å	1.23Å
C	OXT	sing	1.34Å	1.33Å
OXT	HXT	sing	0.97Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
CA	N	H	110.2°	106.7°
CA	N	H2	112.0°	106.7°
N	CA	CB	110.3°	109.4°
N	CA	C	113.2°	109.4°
N	CA	HA	106.1°	109.5°
H	N	H2	111.9°	106.7°
CB	CA	C	108.6°	109.5°
CB	CA	HA	110.9°	109.5°
CA	CB	CG	105.7°	109.5°
CA	CB	HB2	113.6°	109.4°
CA	CB	HB3	113.6°	109.5°
C	CA	HA	107.7°	109.5°
CA	C	O	120.6°	120.1°
CA	C	OXT	115.2°	120.0°
CG	CB	HB2	113.7°	109.4°
CG	CB	HB3	113.7°	109.4°
CB	CG	CD	111.2°	109.5°
CB	CG	HG2	111.5°	109.5°
CB	CG	HG3	111.5°	109.4°
HB2	CB	HB3	96.8°	109.5°
CD	CG	HG2	111.6°	109.5°
CD	CG	HG3	111.6°	109.5°
CG	CD	HD1	111.1°	109.5°
CG	CD	HD2	111.5°	109.5°
CG	CD	HD3	111.6°	109.5°
HG2	CG	HG3	98.8°	109.4°
HD1	CD	HD2	111.7°	109.4°
HD1	CD	HD3	111.6°	109.5°
HD2	CD	HD3	98.8°	109.4°
O	C	OXT	124.2°	119.9°
C	OXT	HXT	115.2°	120.0°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
CA	N	H	H2	125.3°	113.8°
N	CA	CB	C	124.5°	120.0°
N	CA	CB	HA	117.2°	120.0°
N	CA	C	HA	117.0°	120.0°
N	CA	CB	CG	74.0°	60.0°
N	CA	CB	HB2	51.3°	180.0°
N	CA	CB	HB3	160.7°	60.0°
N	CA	C	O	45.6°	30.0°
N	CA	C	OXT	134.6°	150.1°
H	N	CA	CB	180.0°	53.8°
H	N	CA	C	58.1°	173.8°
H	N	CA	HA	59.9°	66.1°
H2	N	CA	CB	54.8°	60.0°
H2	N	CA	C	176.6°	60.0°
H2	N	CA	HA	65.4°	180.0°
CB	CA	C	HA	120.2°	120.0°
CA	CB	CG	HB2	125.2°	120.0°
CA	CB	CG	HB3	125.3°	120.0°
CA	CB	HB2	HB3	119.5°	120.0°
CA	CB	CG	CD	165.5°	179.9°
CA	CB	CG	HG2	40.3°	60.0°
CA	CB	CG	HG3	69.2°	59.9°
CB	CA	C	O	77.2°	89.9°
CB	CA	C	OXT	102.6°	90.0°
C	CA	CB	CG	161.5°	180.0°
C	CA	CB	HB2	73.3°	60.1°
C	CA	CB	HB3	36.1°	60.0°
CA	C	O	OXT	179.8°	179.8°
CA	C	OXT	HXT	180.0°	180.0°
HA	CA	CB	CG	43.2°	60.0°
HA	CA	CB	HB2	168.5°	60.0°
HA	CA	CB	HB3	82.1°	180.0°
HA	CA	C	O	162.5°	150.1°
HA	CA	C	OXT	17.6°	30.1°
CG	CB	HB2	HB3	119.6°	119.9°
CB	CG	CD	HG2	125.2°	120.1°
CB	CG	CD	HG3	125.2°	120.0°
CB	CG	HG2	HG3	117.4°	119.9°
CB	CG	CD	HD1	180.0°	180.0°
CB	CG	CD	HD2	54.7°	60.0°
CB	CG	CD	HD3	54.7°	59.9°
HB2	CB	CG	CD	69.2°	60.0°
HB2	CB	CG	HG2	165.5°	180.0°
HB2	CB	CG	HG3	56.0°	60.1°
HB3	CB	CG	CD	40.3°	60.0°
HB3	CB	CG	HG2	85.0°	60.1°
HB3	CB	CG	HG3	165.5°	180.0°
CD	CG	HG2	HG3	117.6°	120.0°
CG	CD	HD1	HD2	125.2°	120.0°
CG	CD	HD1	HD3	125.2°	120.1°
CG	CD	HD2	HD3	117.5°	120.0°
HG2	CG	CD	HD1	54.7°	59.9°
HG2	CG	CD	HD2	179.9°	60.0°
HG2	CG	CD	HD3	70.5°	180.0°
HG3	CG	CD	HD1	54.8°	60.0°
HG3	CG	CD	HD2	70.5°	180.0°
HG3	CG	CD	HD3	179.9°	60.1°
HD1	CD	HD2	HD3	117.5°	120.0°
O	C	OXT	HXT	0.2°	0.1°

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