NUP
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| O4 | C4 | doub | 1.22Å | 1.23Å | |
| C4 | N2 | sing | 1.35Å | 1.33Å | |
| C4 | C5 | sing | 1.40Å | 1.40Å | |
| N2 | C2 | sing | 1.35Å | 1.34Å | |
| N2 | HN2 | sing | 0.97Å | 1.00Å | |
| C2 | O2 | doub | 1.22Å | 1.25Å | |
| C2 | N1 | sing | 1.35Å | 1.41Å | |
| C5 | C6 | doub | 1.37Å | 1.38Å | |
| C5 | H5 | sing | 1.08Å | 1.08Å | |
| C6 | N1 | sing | 1.37Å | 1.42Å | |
| C6 | N3 | sing | 1.37Å | 1.34Å | |
| N3 | HN31 | sing | 0.97Å | 1.00Å | |
| N3 | HN32 | sing | 0.97Å | 1.00Å | |
| N1 | C1' | sing | 1.47Å | 1.47Å | |
| C1' | C2' | sing | 1.55Å | 1.53Å | |
| C1' | O4' | sing | 1.44Å | 1.44Å | |
| C1' | H1' | sing | 1.09Å | 1.10Å | |
| O4' | C4' | sing | 1.44Å | 1.42Å | |
| C2' | O2' | sing | 1.43Å | 1.44Å | |
| C2' | C3' | sing | 1.55Å | 1.52Å | |
| C2' | H2' | sing | 1.09Å | 1.10Å | |
| O2' | HO2' | sing | 0.97Å | 0.95Å | |
| C3' | O3' | sing | 1.43Å | 1.44Å | |
| C3' | C4' | sing | 1.54Å | 1.53Å | |
| C3' | H3' | sing | 1.09Å | 1.10Å | |
| O3' | HO3' | sing | 0.97Å | 0.95Å | |
| C4' | C5' | sing | 1.53Å | 1.53Å | |
| C4' | H4' | sing | 1.09Å | 1.10Å | |
| C5' | O5' | sing | 1.43Å | 1.43Å | |
| C5' | H5'1 | sing | 1.09Å | 1.10Å | |
| C5' | H5'2 | sing | 1.09Å | 1.10Å | |
| O5' | P | sing | 1.61Å | 1.62Å | |
| P | O1P | doub | 1.48Å | 1.49Å | |
| P | O2P | sing | 1.61Å | 1.51Å | |
| P | O3P | sing | 1.61Å | 1.52Å | |
| O2P | HO2P | sing | 0.97Å | 0.95Å | |
| O3P | HO3P | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O4 | C4 | N2 | 116.1° | 120.2° |
| O4 | C4 | C5 | 120.6° | 120.2° |
| N2 | C4 | C5 | 123.3° | 119.6° |
| C4 | N2 | C2 | 121.3° | 120.5° |
| C4 | N2 | HN2 | 119.3° | 119.8° |
| C4 | C5 | C6 | 116.3° | 119.1° |
| C4 | C5 | H5 | 121.8° | 120.4° |
| C2 | N2 | HN2 | 119.4° | 119.7° |
| N2 | C2 | O2 | 118.7° | 119.5° |
| N2 | C2 | N1 | 119.7° | 121.0° |
| O2 | C2 | N1 | 121.6° | 119.5° |
| C2 | N1 | C6 | 118.2° | 120.4° |
| C2 | N1 | C1' | 119.9° | 119.8° |
| C6 | C5 | H5 | 121.8° | 120.5° |
| C5 | C6 | N1 | 121.1° | 119.4° |
| C5 | C6 | N3 | 117.4° | 120.3° |
| N1 | C6 | N3 | 121.5° | 120.3° |
| C6 | N1 | C1' | 121.8° | 119.8° |
| C6 | N3 | HN31 | 109.5° | 120.0° |
| C6 | N3 | HN32 | 109.5° | 120.0° |
| HN31 | N3 | HN32 | 109.5° | 120.0° |
| N1 | C1' | C2' | 114.5° | 110.6° |
| N1 | C1' | O4' | 109.7° | 110.7° |
| N1 | C1' | H1' | 104.9° | 110.5° |
| C2' | C1' | O4' | 106.6° | 103.5° |
| C2' | C1' | H1' | 108.2° | 110.6° |
| C1' | C2' | O2' | 118.0° | 110.9° |
| C1' | C2' | C3' | 100.3° | 102.1° |
| C1' | C2' | H2' | 111.3° | 110.8° |
| O4' | C1' | H1' | 113.1° | 110.8° |
| C1' | O4' | C4' | 110.8° | 107.0° |
| O4' | C4' | C3' | 104.8° | 107.3° |
| O4' | C4' | C5' | 111.2° | 109.9° |
| O4' | C4' | H4' | 112.7° | 109.9° |
| O2' | C2' | C3' | 112.3° | 111.0° |
| O2' | C2' | H2' | 98.9° | 110.8° |
| C2' | O2' | HO2' | 109.5° | 114.0° |
| C3' | C2' | H2' | 117.0° | 111.0° |
| C2' | C3' | O3' | 108.8° | 110.5° |
| C2' | C3' | C4' | 104.2° | 104.2° |
| C2' | C3' | H3' | 113.7° | 110.5° |
| O3' | C3' | C4' | 110.5° | 110.4° |
| O3' | C3' | H3' | 107.7° | 110.4° |
| C3' | O3' | HO3' | 109.5° | 114.0° |
| C4' | C3' | H3' | 112.0° | 110.6° |
| C3' | C4' | C5' | 112.9° | 109.9° |
| C3' | C4' | H4' | 111.0° | 109.9° |
| C5' | C4' | H4' | 104.5° | 110.0° |
| C4' | C5' | O5' | 107.5° | 109.5° |
| C4' | C5' | H5'1 | 110.1° | 109.5° |
| C4' | C5' | H5'2 | 110.6° | 109.5° |
| O5' | C5' | H5'1 | 110.1° | 109.4° |
| O5' | C5' | H5'2 | 110.6° | 109.5° |
| C5' | O5' | P | 123.8° | 123.0° |
| H5'1 | C5' | H5'2 | 108.0° | 109.5° |
| O5' | P | O1P | 100.4° | 109.5° |
| O5' | P | O2P | 104.9° | 109.5° |
| O5' | P | O3P | 104.1° | 109.4° |
| O1P | P | O2P | 118.9° | 109.5° |
| O1P | P | O3P | 111.5° | 109.5° |
| O2P | P | O3P | 114.4° | 109.5° |
| P | O2P | HO2P | 109.5° | 114.0° |
| P | O3P | HO3P | 109.5° | 113.9° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O4 | C4 | N2 | C5 | 179.1° | 179.8° |
| O4 | C4 | N2 | C2 | 179.8° | 180.0° |
| O4 | C4 | N2 | HN2 | 0.2° | 0.0° |
| O4 | C4 | C5 | C6 | 179.9° | 180.0° |
| O4 | C4 | C5 | H5 | 0.1° | 0.0° |
| C4 | N2 | C2 | HN2 | 180.0° | 180.0° |
| C4 | N2 | C2 | O2 | 179.3° | 180.0° |
| C4 | N2 | C2 | N1 | 0.3° | 0.0° |
| N2 | C4 | C5 | C6 | 1.0° | 0.2° |
| N2 | C4 | C5 | H5 | 179.0° | 179.8° |
| C5 | C4 | N2 | C2 | 0.7° | 0.3° |
| C5 | C4 | N2 | HN2 | 179.3° | 179.8° |
| C4 | C5 | C6 | H5 | 180.0° | 180.0° |
| C4 | C5 | C6 | N1 | 0.2° | 0.0° |
| C4 | C5 | C6 | N3 | 179.4° | 179.9° |
| N2 | C2 | O2 | N1 | 179.7° | 180.0° |
| N2 | C2 | N1 | C6 | 1.1° | 0.2° |
| N2 | C2 | N1 | C1' | 179.5° | 180.0° |
| HN2 | N2 | C2 | O2 | 0.7° | 0.0° |
| HN2 | N2 | C2 | N1 | 179.6° | 180.0° |
| O2 | C2 | N1 | C6 | 178.6° | 179.7° |
| O2 | C2 | N1 | C1' | 0.2° | 0.0° |
| C2 | N1 | C6 | C5 | 0.8° | 0.3° |
| C2 | N1 | C6 | C1' | 178.4° | 179.7° |
| C2 | N1 | C6 | N3 | 178.4° | 179.8° |
| C2 | N1 | C1' | C2' | 52.1° | 68.3° |
| C2 | N1 | C1' | O4' | 67.7° | 45.8° |
| C2 | N1 | C1' | H1' | 170.5° | 168.9° |
| C5 | C6 | N1 | N3 | 179.2° | 179.9° |
| C5 | C6 | N3 | HN31 | 117.3° | 7.3° |
| C5 | C6 | N3 | HN32 | 122.7° | 172.6° |
| C5 | C6 | N1 | C1' | 179.2° | 180.0° |
| H5 | C5 | C6 | N1 | 179.7° | 179.9° |
| H5 | C5 | C6 | N3 | 0.5° | 0.0° |
| N1 | C6 | N3 | HN31 | 63.5° | 172.8° |
| N1 | C6 | N3 | HN32 | 56.5° | 7.3° |
| C6 | N1 | C1' | C2' | 129.5° | 112.0° |
| C6 | N1 | C1' | O4' | 110.7° | 133.9° |
| C6 | N1 | C1' | H1' | 11.1° | 10.8° |
| C6 | N3 | HN31 | HN32 | 120.0° | 180.0° |
| N3 | C6 | N1 | C1' | 0.0° | 0.1° |
| N1 | C1' | C2' | O4' | 121.5° | 118.6° |
| N1 | C1' | C2' | H1' | 116.6° | 122.8° |
| N1 | C1' | O4' | H1' | 116.8° | 123.0° |
| N1 | C1' | O4' | C4' | 136.9° | 158.6° |
| N1 | C1' | C2' | O2' | 86.2° | 86.2° |
| N1 | C1' | C2' | C3' | 151.6° | 155.5° |
| N1 | C1' | C2' | H2' | 27.1° | 37.3° |
| C2' | C1' | O4' | H1' | 118.7° | 118.5° |
| C2' | C1' | O4' | C4' | 12.4° | 40.0° |
| C1' | C2' | O2' | C3' | 115.9° | 112.7° |
| C1' | C2' | O2' | H2' | 119.9° | 123.5° |
| C1' | C2' | C3' | H2' | 120.4° | 118.1° |
| C1' | C2' | O2' | HO2' | 44.3° | 180.0° |
| C1' | C2' | C3' | O3' | 82.0° | 97.8° |
| C1' | C2' | C3' | C4' | 35.9° | 20.8° |
| C1' | C2' | C3' | H3' | 158.1° | 139.7° |
| O4' | C1' | C2' | O2' | 152.3° | 155.2° |
| O4' | C1' | C2' | C3' | 30.0° | 37.0° |
| O4' | C1' | C2' | H2' | 94.5° | 81.3° |
| C1' | O4' | C4' | C3' | 10.9° | 26.5° |
| C1' | O4' | C4' | C5' | 111.4° | 145.9° |
| C1' | O4' | C4' | H4' | 131.6° | 93.0° |
| H1' | C1' | O4' | C4' | 106.3° | 78.5° |
| H1' | C1' | C2' | O2' | 30.4° | 36.6° |
| H1' | C1' | C2' | C3' | 91.8° | 81.7° |
| H1' | C1' | C2' | H2' | 143.7° | 160.1° |
| O4' | C4' | C3' | C2' | 30.1° | 2.0° |
| O4' | C4' | C3' | O3' | 86.6° | 120.7° |
| O4' | C4' | C3' | C5' | 121.2° | 119.4° |
| O4' | C4' | C3' | H4' | 121.9° | 119.5° |
| O4' | C4' | C3' | H3' | 153.3° | 116.8° |
| O4' | C4' | C5' | H4' | 121.8° | 121.1° |
| O4' | C4' | C5' | O5' | 172.6° | 66.5° |
| O4' | C4' | C5' | H5'1 | 67.4° | 173.6° |
| O4' | C4' | C5' | H5'2 | 51.8° | 53.5° |
| O2' | C2' | C3' | H2' | 113.5° | 123.7° |
| O2' | C2' | C3' | O3' | 44.1° | 20.4° |
| O2' | C2' | C3' | C4' | 162.0° | 139.0° |
| O2' | C2' | C3' | H3' | 75.8° | 102.1° |
| C3' | C2' | O2' | HO2' | 160.2° | 67.3° |
| C2' | C3' | O3' | C4' | 113.8° | 114.8° |
| C2' | C3' | O3' | H3' | 123.6° | 122.6° |
| C2' | C3' | C4' | H3' | 123.3° | 118.8° |
| C2' | C3' | O3' | HO3' | 87.4° | 61.5° |
| C2' | C3' | C4' | C5' | 91.1° | 121.4° |
| C2' | C3' | C4' | H4' | 151.9° | 117.4° |
| H2' | C2' | O2' | HO2' | 75.6° | 56.5° |
| H2' | C2' | C3' | O3' | 157.6° | 144.1° |
| H2' | C2' | C3' | C4' | 84.5° | 97.3° |
| H2' | C2' | C3' | H3' | 37.7° | 21.5° |
| O3' | C3' | C4' | H3' | 120.1° | 122.5° |
| O3' | C3' | C4' | C5' | 152.2° | 119.9° |
| O3' | C3' | C4' | H4' | 35.2° | 1.3° |
| C4' | C3' | O3' | HO3' | 158.8° | 176.2° |
| C3' | C4' | C5' | H4' | 120.7° | 121.1° |
| C3' | C4' | C5' | O5' | 69.9° | 175.7° |
| C3' | C4' | C5' | H5'1 | 50.1° | 55.8° |
| C3' | C4' | C5' | H5'2 | 169.3° | 64.3° |
| H3' | C3' | O3' | HO3' | 36.2° | 61.1° |
| H3' | C3' | C4' | C5' | 32.2° | 2.6° |
| H3' | C3' | C4' | H4' | 84.8° | 123.8° |
| C4' | C5' | O5' | H5'1 | 120.0° | 120.0° |
| C4' | C5' | O5' | H5'2 | 120.8° | 120.0° |
| C4' | C5' | H5'1 | H5'2 | 120.8° | 120.0° |
| C4' | C5' | O5' | P | 179.8° | 180.0° |
| H4' | C4' | C5' | O5' | 50.8° | 54.6° |
| H4' | C4' | C5' | H5'1 | 170.8° | 65.3° |
| H4' | C4' | C5' | H5'2 | 70.0° | 174.6° |
| O5' | C5' | H5'1 | H5'2 | 120.9° | 120.0° |
| C5' | O5' | P | O1P | 162.6° | 55.0° |
| C5' | O5' | P | O2P | 38.7° | 65.0° |
| C5' | O5' | P | O3P | 81.9° | 175.0° |
| H5'1 | C5' | O5' | P | 60.3° | 60.0° |
| H5'2 | C5' | O5' | P | 59.0° | 60.0° |
| O5' | P | O1P | O2P | 113.6° | 120.0° |
| O5' | P | O1P | O3P | 109.8° | 120.0° |
| O5' | P | O2P | O3P | 113.4° | 120.0° |
| O5' | P | O2P | HO2P | 89.7° | 60.0° |
| O5' | P | O3P | HO3P | 114.0° | 180.0° |
| O1P | P | O2P | O3P | 135.4° | 120.0° |
| O1P | P | O2P | HO2P | 159.1° | 180.0° |
| O1P | P | O3P | HO3P | 6.6° | 60.0° |
| O2P | P | O3P | HO3P | 132.1° | 60.0° |
| O3P | P | O2P | HO2P | 23.7° | 60.0° |
