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NSS

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
OAXSBEdoub1.45Å1.43Å
SBEOAYdoub1.45Å1.43Å
SBENATsing1.71Å1.59Å
SBEO5'sing1.64Å1.64Å
NATCsing1.43Å1.33Å
NATHATsing1.03Å1.00Å
COdoub1.23Å1.21Å
CCAsing1.52Å1.51Å
CANsing1.50Å1.46Å
CACBsing1.53Å1.54Å
CAHAsing1.09Å1.10Å
NHN1sing1.02Å1.00Å
NHN2sing1.02Å1.00Å
NHN3sing1.02Å1.00Å
CBCGsing1.52Å1.52Å
CBHB1sing1.10Å1.10Å
CBHB2sing1.10Å1.10Å
CGOD1doub1.23Å1.23Å
CGND2sing1.38Å1.34Å
ND2HD21sing1.01Å1.00Å
ND2HD22sing1.01Å1.00Å
O5'C5'sing1.42Å1.44Å
C5'C4'sing1.52Å1.52Å
C5'H5'1sing1.09Å1.10Å
C5'H5'2sing1.09Å1.10Å
C4'C3'sing1.52Å1.54Å
C4'O4'sing1.45Å1.44Å
C4'H4'sing1.09Å1.10Å
C3'O3'sing1.43Å1.44Å
C3'C2'sing1.52Å1.51Å
C3'H3'sing1.09Å1.10Å
O3'H2sing0.97Å0.95Å
C2'O2'sing1.41Å1.45Å
C2'C1'sing1.52Å1.52Å
C2'H2'sing1.10Å1.10Å
O2'H1sing0.97Å0.95Å
C1'O4'sing1.44Å1.44Å
C1'N9sing1.46Å1.51Å
C1'H1'sing1.10Å1.10Å
N9C4sing1.37Å1.32ÅAromatic
N9C8sing1.37Å1.46ÅAromatic
C4N3sing1.34Å1.35ÅAromatic
C4C5doub1.39Å1.40ÅAromatic
N3C2doub1.35Å1.35ÅAromatic
C2N1sing1.35Å1.33ÅAromatic
C2H3sing1.09Å1.08Å
N1C6doub1.35Å1.36ÅAromatic
C6N6sing1.41Å1.36Å
C6C5sing1.39Å1.40ÅAromatic
N6HN61sing1.00Å1.00Å
N6HN62sing1.00Å1.00Å
C5N7sing1.37Å1.37ÅAromatic
N7C8doub1.32Å1.46ÅAromatic
C8H8sing1.08Å1.08Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
OAXSBEOAY116.7°120.2°
OAXSBENAT112.3°108.3°
OAXSBEO5'107.6°108.2°
OAYSBENAT108.1°107.5°
OAYSBEO5'108.0°108.0°
NATSBEO5'103.2°103.3°
SBENATC128.1°124.4°
SBENATHAT116.0°117.7°
SBEO5'C5'115.0°119.0°
CNATHAT115.9°117.8°
NATCO124.2°123.3°
NATCCA116.0°113.6°
OCCA119.8°123.1°
CCAN109.0°108.8°
CCACB106.3°110.8°
CCAHA112.1°110.6°
NCACB110.1°107.9°
NCAHA108.4°105.4°
CANHN1109.5°110.3°
CANHN2109.5°110.3°
CANHN3109.5°110.4°
CBCAHA111.0°113.0°
CACBCG114.1°113.1°
CACBHB1106.9°110.4°
CACBHB2107.9°110.9°
HN1NHN2109.5°108.6°
HN1NHN3109.5°108.6°
HN2NHN3109.4°108.6°
CGCBHB1106.8°106.2°
CGCBHB2107.9°108.5°
CBCGOD1122.7°124.2°
CBCGND2115.3°112.2°
HB1CBHB2113.2°107.4°
OD1CGND2122.0°123.5°
CGND2HD21126.3°119.6°
CGND2HD22107.4°121.0°
HD21ND2HD22126.3°119.5°
O5'C5'C4'108.7°109.1°
O5'C5'H5'1109.9°108.8°
O5'C5'H5'2109.7°108.7°
C4'C5'H5'1109.9°110.5°
C4'C5'H5'2109.7°110.6°
C5'C4'C3'112.8°112.9°
C5'C4'O4'109.9°108.4°
C5'C4'H4'105.7°109.3°
H5'1C5'H5'2108.9°109.1°
C3'C4'O4'105.4°106.4°
C3'C4'H4'110.2°112.1°
C4'C3'O3'110.2°108.8°
C4'C3'C2'101.8°102.3°
C4'C3'H3'115.1°114.5°
O4'C4'H4'113.0°107.6°
C4'O4'C1'108.6°108.8°
O3'C3'C2'112.9°109.5°
O3'C3'H3'104.5°107.7°
C3'O3'H2109.5°106.4°
C2'C3'H3'112.5°113.8°
C3'C2'O2'109.6°113.1°
C3'C2'C1'102.6°101.5°
C3'C2'H2'112.6°110.3°
O2'C2'C1'105.7°111.9°
O2'C2'H2'109.8°108.9°
C2'O2'H1109.5°107.3°
C1'C2'H2'116.1°111.1°
C2'C1'O4'108.1°106.1°
C2'C1'N9114.3°114.0°
C2'C1'H1'108.1°112.6°
O4'C1'N9112.0°109.7°
O4'C1'H1'110.4°108.9°
N9C1'H1'103.8°105.3°
C1'N9C4126.6°126.9°
C1'N9C8119.1°126.1°
C4N9C8114.3°107.0°
N9C4N3133.4°127.5°
N9C4C5105.6°105.2°
N9C8N7100.5°112.2°
N9C8H8129.7°122.2°
N3C4C5121.1°127.3°
C4N3C2119.6°110.4°
C4C5C6117.5°116.9°
C4C5N7110.6°110.7°
N3C2N1121.2°128.8°
N3C2H3119.4°115.6°
N1C2H3119.4°115.5°
C2N1C6121.8°117.5°
N1C6N6119.1°120.2°
N1C6C5118.9°119.0°
N6C6C5122.0°120.7°
C6N6HN61125.4°119.5°
C6N6HN62109.2°119.4°
C6C5N7131.8°132.4°
HN61N6HN62125.4°120.8°
C5N7C8109.0°104.9°
N7C8H8129.8°125.6°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
OAXSBEOAYNAT127.7°124.4°
OAXSBEOAYO5'121.3°124.7°
OAXSBENATO5'115.6°114.6°
OAXSBENATC56.1°24.6°
OAXSBENATHAT123.9°155.4°
OAXSBEO5'C5'178.7°65.4°
OAYSBENATO5'114.2°114.1°
OAYSBENATC173.7°155.9°
OAYSBENATHAT6.3°24.1°
OAYSBEO5'C5'54.5°66.3°
SBENATCHAT180.0°180.0°
SBENATCO2.1°0.5°
SBENATCCA175.8°180.0°
NATSBEO5'C5'59.8°180.0°
O5'SBENATC59.5°90.0°
O5'SBENATHAT120.5°90.0°
SBEO5'C5'C4'130.5°180.0°
SBEO5'C5'H5'1109.2°59.4°
SBEO5'C5'H5'210.5°59.3°
NATCOCA177.9°179.5°
NATCCAN153.7°114.8°
NATCCACB87.7°126.7°
NATCCAHA33.8°0.5°
HATNATCO177.9°179.5°
HATNATCCA4.2°0.0°
OCCAN28.2°64.7°
OCCACB90.4°53.8°
OCCAHA148.2°180.0°
CCANCB116.2°120.3°
CCANHA122.3°118.7°
CCACBHA122.1°124.8°
CCANHN1110.4°148.4°
CCANHN29.6°28.5°
CCANHN3129.5°91.5°
CCACBCG179.1°64.8°
CCACBHB161.2°54.1°
CCACBHB260.9°173.0°
NCACBHA120.0°116.1°
CANHN1HN2120.0°121.0°
CANHN1HN3120.0°121.1°
CANHN2HN3120.0°121.1°
NCACBCG63.0°176.1°
NCACBHB1179.1°65.0°
NCACBHB257.0°54.0°
CBCANHN15.7°28.1°
CBCANHN2125.7°91.9°
CBCANHN3114.3°148.1°
CACBCGHB1117.9°121.3°
CACBCGHB2120.0°123.4°
CACBHB1HB2118.7°121.0°
CACBCGOD162.6°2.1°
CACBCGND2117.3°178.7°
HACANHN1127.3°92.9°
HACANHN2112.7°147.1°
HACANHN37.3°27.1°
HACACBCG57.0°60.0°
HACACBHB160.9°178.9°
HACACBHB2177.0°62.1°
HN1NHN2HN3120.0°117.9°
CGCBHB1HB2118.7°116.0°
CBCGOD1ND2179.9°179.1°
CBCGND2HD210.0°0.3°
CBCGND2HD22180.0°179.7°
HB1CBCGOD155.3°119.2°
HB1CBCGND2124.8°60.0°
HB2CBCGOD1177.4°125.5°
HB2CBCGND22.7°55.3°
OD1CGND2HD21179.9°179.5°
OD1CGND2HD220.1°0.5°
CGND2HD21HD22180.0°179.9°
O5'C5'C4'H5'1120.3°119.6°
O5'C5'C4'H5'2120.0°119.5°
O5'C5'H5'1H5'2120.2°118.5°
O5'C5'C4'C3'64.8°179.5°
O5'C5'C4'O4'52.6°61.9°
O5'C5'C4'H4'174.8°55.0°
C4'C5'H5'1H5'2120.2°121.8°
C5'C4'C3'O4'119.9°118.8°
C5'C4'C3'H4'117.8°123.9°
C5'C4'O4'H4'117.8°118.0°
C5'C4'C3'O3'85.5°154.1°
C5'C4'C3'C2'154.5°90.2°
C5'C4'C3'H3'32.4°33.5°
C5'C4'O4'C1'142.0°114.3°
H5'1C5'C4'C3'174.9°60.0°
H5'1C5'C4'O4'67.7°57.7°
H5'1C5'C4'H4'54.5°174.6°
H5'2C5'C4'C3'55.2°60.9°
H5'2C5'C4'O4'172.5°178.6°
H5'2C5'C4'H4'65.2°64.5°
C3'C4'O4'H4'120.4°120.3°
C4'C3'O3'C2'113.1°111.1°
C4'C3'O3'H3'124.2°124.6°
C4'C3'C2'H3'123.8°124.1°
C4'C3'O3'H291.8°142.7°
C4'C3'C2'O2'77.3°157.4°
C4'C3'C2'C1'34.7°37.4°
C4'C3'C2'H2'160.2°80.4°
C3'C4'O4'C1'20.2°7.4°
O4'C4'C3'O3'154.6°87.2°
O4'C4'C3'C2'34.5°28.6°
O4'C4'C3'H3'87.6°152.3°
C4'O4'C1'C2'2.4°16.9°
C4'O4'C1'N9124.4°140.6°
C4'O4'C1'H1'120.4°104.6°
H4'C4'C3'O3'32.3°30.1°
H4'C4'C3'C2'87.7°145.9°
H4'C4'C3'H3'150.2°90.4°
H4'C4'O4'C1'100.2°127.7°
O3'C3'C2'H3'118.0°120.6°
O3'C3'C2'O2'40.8°42.1°
O3'C3'C2'C1'152.8°77.9°
O3'C3'C2'H2'81.6°164.3°
C2'C3'O3'H221.3°106.3°
C3'C2'O2'C1'109.9°113.8°
C3'C2'O2'H2'124.2°123.0°
C3'C2'C1'H2'123.2°117.3°
C3'C2'O2'H1178.3°58.3°
C3'C2'C1'O4'24.1°34.2°
C3'C2'C1'N9101.4°155.2°
C3'C2'C1'H1'143.7°84.9°
H3'C3'O3'H2143.9°18.0°
H3'C3'C2'O2'158.9°78.5°
H3'C3'C2'C1'89.2°161.5°
H3'C3'C2'H2'36.4°43.7°
O2'C2'C1'H2'121.9°121.9°
O2'C2'C1'O4'90.7°155.0°
O2'C2'C1'N9143.8°84.0°
O2'C2'C1'H1'28.8°35.9°
C1'C2'O2'H168.4°55.6°
C2'C1'O4'N9126.8°123.7°
C2'C1'O4'H1'118.0°121.5°
C2'C1'N9H1'117.4°124.0°
C2'C1'N9C4104.8°94.0°
C2'C1'N9C876.9°86.0°
H2'C2'O2'H157.5°178.7°
H2'C2'C1'O4'147.4°83.0°
H2'C2'C1'N921.9°37.9°
H2'C2'C1'H1'93.1°157.8°
O4'C1'N9H1'119.2°117.1°
O4'C1'N9C4131.8°147.1°
O4'C1'N9C846.5°32.9°
C1'N9C4C8178.4°179.9°
C1'N9C4N30.8°0.0°
C1'N9C4C5179.5°179.9°
C1'N9C8N7178.9°180.0°
C1'N9C8H81.1°0.1°
H1'C1'N9C412.7°29.9°
H1'C1'N9C8165.7°150.0°
N9C4N3C5179.6°180.0°
N9C4N3C2179.8°180.0°
N9C4C5C6179.4°180.0°
N9C4C5N71.4°0.0°
C4N9C8N70.4°0.0°
C4N9C8H8179.6°180.0°
C8N9C4N3179.3°180.0°
C8N9C4C51.1°0.0°
N9C8N7C50.5°0.0°
N9C8N7H8180.0°179.9°
C4N3C2N10.3°0.0°
C4N3C2H3179.7°180.0°
N3C4C5C60.9°0.0°
N3C4C5N7178.9°180.0°
C5C4N3C20.6°0.0°
C4C5C6N10.9°0.0°
C4C5C6N6178.3°180.0°
C4C5C6N7177.5°179.9°
C4C5N7C81.2°0.0°
N3C2N1H3180.0°180.0°
N3C2N1C60.3°0.0°
C2N1C6N6178.6°180.0°
C2N1C6C50.6°0.0°
H3C2N1C6179.8°180.0°
N1C6N6C5179.2°180.0°
N1C6N6HN61179.6°84.9°
N1C6N6HN620.4°101.4°
N1C6C5N7178.3°180.0°
C6N6HN61HN62180.0°173.6°
N6C6C5N70.8°0.1°
C5C6N6HN610.4°95.2°
C5C6N6HN62179.6°78.5°
C6C5N7C8178.8°180.0°
C5N7C8H8179.5°180.0°

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PDB entries from 2024-07-17

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