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Summary Geometry Related PDB entries

NPT

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
N	C1	sing	1.47Å	1.48Å
N	HN1	sing	1.01Å	1.02Å
N	HN2	sing	1.01Å	1.02Å
C1	C2	sing	1.53Å	1.56Å
C1	H11	sing	1.09Å	1.11Å
C1	H12	sing	1.09Å	1.12Å
C2	C3	sing	1.53Å	1.54Å
C2	C4	sing	1.53Å	1.54Å
C2	C5	sing	1.53Å	1.52Å
C3	H31	sing	1.09Å	1.12Å
C3	H32	sing	1.09Å	1.11Å
C3	H33	sing	1.09Å	1.11Å
C4	H41	sing	1.09Å	1.12Å
C4	H42	sing	1.09Å	1.12Å
C4	H43	sing	1.09Å	1.11Å
C5	H51	sing	1.09Å	1.12Å
C5	H52	sing	1.09Å	1.11Å
C5	H53	sing	1.09Å	1.12Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
C1	N	HN1	109.4°	106.8°
C1	N	HN2	112.2°	106.7°
N	C1	C2	109.4°	109.5°
N	C1	H11	112.3°	109.5°
N	C1	H12	112.3°	109.4°
HN1	N	HN2	112.3°	106.7°
C2	C1	H11	112.2°	109.5°
C2	C1	H12	112.2°	109.5°
C1	C2	C3	112.5°	109.5°
C1	C2	C4	103.6°	109.5°
C1	C2	C5	111.1°	109.5°
H11	C1	H12	98.2°	109.5°
C3	C2	C4	107.5°	109.4°
C3	C2	C5	107.4°	109.4°
C2	C3	H31	112.5°	109.5°
C2	C3	H32	111.1°	109.4°
C2	C3	H33	111.1°	109.5°
C4	C2	C5	114.7°	109.5°
C2	C4	H41	103.6°	109.5°
C2	C4	H42	114.4°	109.6°
C2	C4	H43	114.4°	109.5°
C2	C5	H51	111.1°	109.5°
C2	C5	H52	111.6°	109.5°
C2	C5	H53	111.7°	109.5°
H31	C3	H32	111.1°	109.5°
H31	C3	H33	111.1°	109.5°
H32	C3	H33	99.3°	109.5°
H41	C4	H42	114.4°	109.4°
H41	C4	H43	114.4°	109.5°
H42	C4	H43	96.1°	109.5°
H51	C5	H52	111.6°	109.5°
H51	C5	H53	111.6°	109.5°
H52	C5	H53	98.8°	109.4°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
C1	N	HN1	HN2	125.2°	113.8°
N	C1	C2	H11	125.3°	120.1°
N	C1	C2	H12	125.3°	119.9°
N	C1	H11	H12	118.2°	120.0°
N	C1	C2	C3	56.9°	180.0°
N	C1	C2	C4	58.9°	60.0°
N	C1	C2	C5	177.3°	60.1°
HN1	N	C1	C2	180.0°	66.2°
HN1	N	C1	H11	54.7°	173.8°
HN1	N	C1	H12	54.8°	53.8°
HN2	N	C1	C2	54.8°	180.0°
HN2	N	C1	H11	180.0°	59.9°
HN2	N	C1	H12	70.5°	60.1°
C2	C1	H11	H12	118.1°	120.0°
C1	C2	C3	C4	113.5°	120.1°
C1	C2	C3	C5	122.6°	120.0°
C1	C2	C4	C5	121.3°	120.1°
C1	C2	C3	H31	180.0°	180.0°
C1	C2	C3	H32	54.8°	60.0°
C1	C2	C3	H33	54.8°	59.9°
C1	C2	C4	H41	180.0°	60.0°
C1	C2	C4	H42	54.8°	180.0°
C1	C2	C4	H43	54.7°	60.0°
C1	C2	C5	H51	180.0°	59.9°
C1	C2	C5	H52	54.7°	60.1°
C1	C2	C5	H53	54.8°	180.0°
H11	C1	C2	C3	68.4°	59.9°
H11	C1	C2	C4	175.8°	180.0°
H11	C1	C2	C5	52.1°	60.0°
H12	C1	C2	C3	177.8°	60.0°
H12	C1	C2	C4	66.3°	60.0°
H12	C1	C2	C5	57.4°	180.0°
C3	C2	C4	C5	119.4°	119.9°
C2	C3	H31	H32	125.3°	119.9°
C2	C3	H31	H33	125.2°	120.0°
C2	C3	H32	H33	117.0°	119.9°
C3	C2	C4	H41	60.7°	60.1°
C3	C2	C4	H42	174.1°	59.9°
C3	C2	C4	H43	64.6°	180.0°
C3	C2	C5	H51	56.5°	60.1°
C3	C2	C5	H52	68.7°	179.9°
C3	C2	C5	H53	178.2°	60.0°
C4	C2	C3	H31	66.5°	59.9°
C4	C2	C3	H32	58.7°	60.1°
C4	C2	C3	H33	168.2°	180.0°
C2	C4	H41	H42	125.2°	120.1°
C2	C4	H41	H43	125.3°	120.0°
C2	C4	H42	H43	120.3°	120.1°
C4	C2	C5	H51	62.9°	180.0°
C4	C2	C5	H52	171.9°	60.0°
C4	C2	C5	H53	62.4°	59.9°
C5	C2	C3	H31	57.4°	60.0°
C5	C2	C3	H32	177.3°	180.0°
C5	C2	C3	H33	67.8°	60.1°
C5	C2	C4	H41	58.7°	180.0°
C5	C2	C4	H42	66.5°	60.0°
C5	C2	C4	H43	176.0°	60.1°
C2	C5	H51	H52	125.3°	120.0°
C2	C5	H51	H53	125.3°	120.1°
C2	C5	H52	H53	117.6°	120.0°
H31	C3	H32	H33	117.0°	120.1°
H41	C4	H42	H43	120.3°	119.9°
H51	C5	H52	H53	117.4°	120.0°

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