Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

NPK

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
N1C3sing1.34Å1.33Å
N1C5sing1.47Å1.48Å
N1C30sing1.35Å1.35Å
S1C2sing1.84Å1.77Å
S1C6sing1.84Å1.76Å
C2C4sing1.54Å1.52Å
C2C7sing1.53Å1.50Å
N2C3sing1.34Å1.24Å
N2C4sing1.47Å1.44Å
C3O3doub1.22Å1.25Å
C4C5sing1.53Å1.52Å
C5C6sing1.54Å1.54Å
C7C8sing1.53Å1.48Å
C8C9sing1.53Å1.45Å
C9C10sing1.53Å1.30Å
C10C11sing1.51Å1.47Å
C11O11doub1.21Å1.22Å
C11O12sing1.34Å1.27Å
C30O31doub1.21Å1.22Å
C30O32sing1.35Å1.42Å
O32C33sing1.45Å1.39Å
C33C34sing1.53Å1.55Å
C33C35sing1.51Å1.51Å
C35C36doub1.38Å1.39ÅAromatic
C35C40sing1.38Å1.53ÅAromatic
C36C37sing1.39Å1.37ÅAromatic
C37C38doub1.39Å1.47ÅAromatic
C37O44sing1.36Å1.38Å
C38C39sing1.39Å1.38ÅAromatic
C38O46sing1.36Å1.36Å
C39C40doub1.38Å1.41ÅAromatic
C40N40sing1.48Å1.42Å
N40O54doub1.22Å1.23Å
N40O55sing1.22Å1.23Å
O44C45sing1.44Å1.45Å
C45O46sing1.44Å1.47Å
C2H2sing1.09Å1.10Å
N2HN2sing0.97Å1.00Å
C4H4sing1.09Å1.10Å
C5H5sing1.09Å1.10Å
C6H6sing1.09Å1.10Å
C6H6Asing1.09Å1.10Å
C7H7sing1.09Å1.10Å
C7H7Asing1.09Å1.10Å
C8H8sing1.09Å1.10Å
C8H8Asing1.09Å1.10Å
C9H9sing1.09Å1.10Å
C9H9Asing1.09Å1.10Å
C10H10sing1.09Å1.10Å
C10H10Asing1.09Å1.10Å
O12HO12sing0.97Å0.95Å
C33H33sing1.09Å1.10Å
C34H34sing1.09Å1.10Å
C34H34Asing1.09Å1.10Å
C34H34Bsing1.09Å1.10Å
C36H36sing1.08Å1.08Å
C39H39sing1.08Å1.08Å
C45H45sing1.09Å1.10Å
C45H45Asing1.09Å1.10Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C3N1C5113.4°109.1°
C3N1C30121.0°125.5°
N1C3N2105.9°113.9°
N1C3O3128.1°123.1°
C5N1C30125.5°125.5°
N1C5C497.8°104.0°
N1C5C6110.8°109.2°
N1C5H5112.9°110.3°
N1C30O31127.2°120.0°
N1C30O32118.0°120.0°
C2S1C698.2°94.8°
S1C2C4107.6°102.7°
S1C2C7110.7°110.8°
S1C2H2106.2°110.8°
S1C6C5108.8°102.7°
S1C6H6109.6°110.8°
S1C6H6A109.6°110.8°
C4C2C7113.9°110.8°
C2C4N293.5°109.2°
C2C4C5113.8°112.4°
C4C2H2108.9°110.8°
C2C4H4114.7°110.2°
C2C7C8110.3°109.5°
C7C2H2109.2°110.8°
C2C7H7109.3°109.5°
C2C7H7A109.3°109.5°
C3N2C4117.0°109.0°
N2C3O3125.8°123.0°
C3N2HN2121.5°125.5°
N2C4C5101.8°104.0°
C4N2HN2121.5°125.5°
N2C4H4116.1°110.2°
C4C5C6110.4°112.4°
C5C4H4114.6°110.6°
C4C5H5112.3°110.2°
C6C5H5112.0°110.5°
C5C6H6109.7°110.7°
C5C6H6A109.6°110.7°
C7C8C997.0°109.5°
C8C7H7109.3°109.5°
C8C7H7A109.3°109.4°
C7C8H8112.5°109.5°
C7C8H8A112.5°109.5°
C8C9C10133.5°109.5°
C9C8H8112.5°109.5°
C9C8H8A112.5°109.5°
C8C9H9103.2°109.5°
C8C9H9A103.2°109.5°
C9C10C11100.8°109.5°
C10C9H9103.1°109.5°
C10C9H9A103.1°109.4°
C9C10H10111.6°109.5°
C9C10H10A111.6°109.5°
C10C11O11120.9°120.0°
C10C11O12119.9°120.0°
C11C10H10111.6°109.5°
C11C10H10A111.6°109.5°
O11C11O12119.2°120.0°
C11O12HO12109.5°117.0°
O31C30O32114.5°120.1°
C30O32C33122.0°116.9°
O32C33C34108.1°109.5°
O32C33C35128.2°109.5°
O32C33H33101.7°109.5°
C34C33C35112.7°109.4°
C34C33H33100.5°109.5°
C33C34H34109.5°109.5°
C33C34H34A109.5°109.4°
C33C34H34B109.5°109.5°
C33C35C36107.0°119.9°
C33C35C40132.6°119.9°
C35C33H33100.8°109.5°
C36C35C40119.5°120.1°
C35C36C37119.9°120.0°
C35C36H36120.1°120.0°
C35C40C39120.0°120.1°
C35C40N40125.2°119.9°
C36C37C38119.8°119.8°
C36C37O44128.5°131.5°
C37C36H36120.1°120.0°
C38C37O44111.7°108.7°
C37C38C39124.1°119.8°
C37C38O46105.5°108.6°
C37O44C45106.2°105.5°
C39C38O46130.4°131.6°
C38C39C40116.5°120.1°
C38C39H39121.8°120.0°
C38O46C45110.2°105.5°
C39C40N40114.5°119.9°
C40C39H39121.7°119.9°
C40N40O54125.3°120.0°
C40N40O55115.6°119.9°
O54N40O55118.8°120.1°
O44C45O46106.4°103.7°
O44C45H45110.3°110.6°
O44C45H45A110.3°110.6°
O46C45H45110.2°110.5°
O46C45H45A110.2°110.5°
H6C6H6A109.5°110.8°
H7C7H7A109.4°109.5°
H8C8H8A109.5°109.4°
H9C9H9A109.5°109.5°
H10C10H10A109.5°109.4°
H34C34H34A109.4°109.5°
H34C34H34B109.5°109.5°
H34AC34H34B109.5°109.5°
H45C45H45A109.5°110.6°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C3N1C5C30176.1°179.7°
N1C3N2O3176.6°180.0°
N1C3N2C45.6°0.0°
C3N1C5C420.9°0.0°
C3N1C5C694.4°120.2°
C3N1C30O314.0°180.0°
C3N1C30O32177.6°0.1°
N1C3N2HN2174.3°179.9°
C3N1C5H5139.1°118.2°
N1C5C6S1113.6°139.5°
N1C5C4C2114.5°118.0°
C5N1C3N217.6°0.0°
N1C5C4N215.3°0.0°
C5N1C3O3158.9°180.0°
N1C5C4C6115.6°118.0°
N1C5C4H5118.7°118.2°
N1C5C6H5127.0°121.5°
C5N1C30O31179.9°0.3°
C5N1C30O326.6°179.7°
N1C5C4H4110.9°118.3°
N1C5C6H66.3°21.2°
N1C5C6H6A126.6°102.1°
C30N1C3N2158.7°179.7°
C30N1C3O324.8°0.3°
C30N1C5C4155.2°179.7°
C30N1C5C689.5°60.1°
N1C30O31O32173.8°180.0°
N1C30O32C33120.5°180.0°
C30N1C5H537.0°61.6°
S1C2C4C7123.2°118.3°
S1C2C4H2114.7°118.3°
S1C2C7H2116.5°123.3°
S1C2C4N2112.6°139.6°
S1C2C4C58.1°24.6°
C2S1C6C510.0°34.7°
S1C2C7C8103.1°66.4°
S1C2C4H4126.5°99.2°
C2S1C6H6109.9°83.6°
C2S1C6H6A129.9°153.0°
S1C2C7H7136.8°173.5°
S1C2C7H7A17.1°53.5°
C6S1C2C410.5°34.7°
C6S1C2C7135.6°153.0°
S1C6C5C46.4°24.6°
S1C6C5H6119.9°118.3°
S1C6C5H6A119.9°118.4°
C6S1C2H2106.0°83.6°
S1C6C5H5119.5°99.0°
S1C6H6H6A120.3°123.4°
C4C2C7H2122.0°123.4°
C2C4N2C3122.7°120.2°
C2C4N2C5115.2°120.2°
C2C4N2H4119.7°121.2°
C2C4C5H4134.6°123.6°
C2C4C5C61.2°0.0°
C4C2C7C8135.5°179.7°
C2C4N2HN257.4°59.7°
C2C4C5H5126.8°123.8°
C4C2C7H715.3°60.2°
C4C2C7H7A104.4°59.8°
C7C2C4N2124.2°102.1°
C7C2C4C5131.3°142.9°
C2C7C8H7120.1°120.0°
C2C7C8H7A120.2°120.0°
C2C7C8C9171.2°180.0°
C7C2C4H43.3°19.1°
C2C7H7H7A119.6°120.0°
C2C7C8H853.3°60.0°
C2C7C8H8A70.9°60.0°
C3N2C4HN2180.0°179.9°
C3N2C4C57.5°0.0°
C3N2C4H4117.6°118.6°
C4N2C3O3171.0°180.0°
N2C4C5H4126.2°118.3°
N2C4C5C6100.4°118.0°
N2C4C2H22.0°21.3°
N2C4C5H5134.0°118.2°
O3C3N2HN29.0°0.1°
C4C5C6H5125.8°123.6°
C5C4C2H2106.6°93.7°
C5C4N2HN2172.5°179.9°
C4C5C6H6113.5°93.7°
C4C5C6H6A126.3°143.0°
C6C5C4H4133.5°123.6°
C5C6H6H6A120.3°123.3°
C7C8C9H8117.9°120.0°
C7C8C9H8A117.9°120.1°
C7C8C9C10165.8°180.0°
C8C7C2H213.5°56.9°
C8C7H7H7A119.6°120.0°
C7C8H8H8A125.8°120.0°
C7C8C9H971.1°60.0°
C7C8C9H9A42.8°60.0°
C8C9C10H9123.0°120.0°
C8C9C10H9A123.0°120.0°
C8C9C10C11178.4°180.0°
C9C8C7H768.7°60.0°
C9C8C7H7A51.0°60.0°
C9C8H8H8A125.9°119.9°
C8C9H9H9A109.3°120.0°
C8C9C10H1059.8°60.0°
C8C9C10H10A63.0°59.9°
C9C10C11H10118.6°120.0°
C9C10C11H10A118.6°120.0°
C9C10C11O11133.3°0.0°
C9C10C11O1243.8°180.0°
C10C9C8H847.9°60.0°
C10C9C8H8A76.3°59.9°
C10C9H9H9A109.3°120.0°
C9C10H10H10A124.0°120.0°
C10C11O11O12177.1°180.0°
C11C10C9H958.6°60.0°
C11C10C9H9A55.4°60.0°
C11C10H10H10A124.0°120.0°
C10C11O12HO12177.2°180.0°
O11C11C10H1014.7°120.0°
O11C11C10H10A108.1°120.1°
O11C11O12HO120.0°0.0°
O12C11C10H10162.4°60.0°
O12C11C10H10A74.8°59.9°
O31C30O32C3365.1°0.0°
C30O32C33C34161.1°90.0°
C30O32C33C3520.4°150.0°
C30O32C33H3393.6°30.0°
O32C33C34C35147.3°120.0°
O32C33C34H33106.1°120.0°
O32C33C35H33114.4°120.0°
O32C33C35C36104.3°21.3°
O32C33C35C4086.8°159.0°
O32C33C34H34180.0°59.9°
O32C33C34H34A60.0°60.0°
O32C33C34H34B60.0°180.0°
C34C33C35H33106.3°120.0°
C34C33C35C36116.4°98.7°
C34C33C35C4052.4°81.0°
C33C34H34H34A120.0°119.9°
C33C34H34H34B120.0°120.0°
C33C34H34AH34B120.0°120.0°
C33C35C36C40170.6°179.7°
C33C35C36C37174.8°180.0°
C33C35C40C39172.0°179.8°
C33C35C40N4014.2°0.1°
C35C33C34H3432.7°60.1°
C35C33C34H34A87.3°180.0°
C35C33C34H34B152.7°60.0°
C33C35C36H365.2°0.0°
C35C36C37H36180.0°180.0°
C35C36C37C382.2°0.0°
C35C36C37O44178.1°180.0°
C36C35C40C394.3°0.5°
C36C35C40N40178.1°179.8°
C36C35C33H3310.1°141.3°
C40C35C36C374.1°0.3°
C35C40C39C382.2°0.5°
C35C40C39N40174.4°179.7°
C35C40N40O5426.7°175.2°
C35C40N40O55148.2°4.7°
C40C35C33H33158.8°39.0°
C40C35C36H36175.9°179.7°
C35C40C39H39177.8°179.7°
C36C37C38O44179.7°180.0°
C36C37C38C390.2°0.0°
C36C37C38O46179.7°179.9°
C36C37O44C45178.6°162.8°
C37C38C39O46179.9°180.0°
C37C38C39C400.3°0.2°
C38C37O44C451.1°17.3°
C37C38O46C451.1°17.3°
C38C37C36H36177.8°180.0°
C37C38C39H39179.7°180.0°
O44C37C38C39179.9°180.0°
O44C37C38O460.0°0.0°
C37O44C45O461.7°27.1°
O44C37C36H361.9°0.0°
C37O44C45H45117.8°145.6°
C37O44C45H45A121.2°91.4°
C38C39C40H39180.0°179.8°
C38C39C40N40176.7°179.8°
C39C38O46C45178.8°162.7°
O46C38C39C40179.6°179.8°
C38O46C45O441.8°27.1°
O46C38C39H390.4°0.0°
C38O46C45H45117.7°145.7°
C38O46C45H45A121.3°91.5°
C39C40N40O54159.2°5.1°
C39C40N40O5525.9°175.0°
C40N40O54O55174.7°179.9°
N40C40C39H393.3°0.0°
O44C45O46H45119.5°118.6°
O44C45O46H45A119.5°118.6°
O44C45H45H45A121.5°122.9°
O46C45H45H45A121.4°122.7°
H2C2C4H4118.8°142.5°
H2C2C7H7106.7°63.1°
H2C2C7H7A133.6°176.9°
HN2N2C4H462.3°61.5°
H4C4C5H57.8°0.2°
H5C5C6H6120.7°142.7°
H5C5C6H6A0.4°19.3°
H7C7C8H8173.4°180.0°
H7C7C8H8A49.3°60.0°
H7AC7C8H866.9°60.0°
H7AC7C8H8A169.0°180.0°
H8C8C9H9171.0°180.0°
H8C8C9H9A75.1°60.0°
H8AC8C9H946.8°60.1°
H8AC8C9H9A160.7°179.9°
H9C9C10H10177.1°180.0°
H9C9C10H10A60.0°60.1°
H9AC9C10H1063.2°60.0°
H9AC9C10H10A174.0°179.9°
H33C33C34H3473.9°179.9°
H33C33C34H34A166.1°60.0°
H33C33C34H34B46.1°60.0°
H34C34H34AH34B120.0°120.0°

223532

PDB entries from 2024-08-07

PDB statisticsPDBj update infoContact PDBjnumon