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NPI

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
CACBsing1.53Å1.50Å
CACsing1.51Å1.53Å
CANsing1.47Å1.46Å
CAHAsing1.09Å1.10Å
CBC4sing1.53Å1.50Å
CBH31sing1.09Å1.10Å
CBH32sing1.09Å1.10Å
C4C5sing1.53Å1.54Å
C4H41sing1.09Å1.10Å
C4H42sing1.09Å1.10Å
C5C6sing1.53Å1.51Å
C5H51sing1.09Å1.10Å
C5H52sing1.09Å1.10Å
C6C7sing1.51Å1.54Å
C6H61sing1.09Å1.10Å
C6H62sing1.09Å1.10Å
COdoub1.21Å1.24Å
COXTsing1.34Å1.31Å
OXTHXTsing0.97Å0.95Å
NHsing1.01Å1.00Å
NH2sing1.01Å1.00Å
C7O71doub1.21Å1.24Å
C7O72sing1.34Å1.31Å
O72HOsing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
CBCAC108.1°109.5°
CBCAN110.8°109.5°
CBCAHA110.1°109.5°
CACBC4108.9°109.4°
CACBH31109.7°109.4°
CACBH32109.6°109.5°
CCAN111.1°109.5°
CCAHA109.8°109.4°
CACO121.5°120.0°
CACOXT117.1°120.1°
NCAHA107.0°109.5°
CANH109.5°111.0°
CANH2109.5°111.0°
C4CBH31109.7°109.5°
C4CBH32109.7°109.5°
CBC4C5111.1°109.4°
CBC4H41108.9°109.5°
CBC4H42108.9°109.5°
H31CBH32109.3°109.5°
C5C4H41108.9°109.4°
C5C4H42108.9°109.5°
C4C5C6115.0°109.5°
C4C5H51107.6°109.5°
C4C5H52107.6°109.5°
H41C4H42110.0°109.5°
C6C5H51107.7°109.5°
C6C5H52107.7°109.5°
C5C6C7117.4°109.5°
C5C6H61106.9°109.5°
C5C6H62106.9°109.5°
H51C5H52111.2°109.5°
C7C6H61106.9°109.5°
C7C6H62106.9°109.5°
C6C7O71122.7°120.0°
C6C7O72125.1°120.0°
H61C6H62111.9°109.5°
OCOXT121.4°119.9°
COXTHXT109.5°117.1°
HNH2109.5°111.0°
O71C7O72112.1°120.0°
C7O72HO109.5°116.9°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
CBCACN121.7°120.1°
CBCACHA120.1°120.0°
CBCANHA120.0°120.0°
CACBC4H31120.0°119.9°
CACBC4H32120.0°120.0°
CACBH31H32120.2°120.0°
CACBC4C5175.5°180.0°
CACBC4H4164.5°60.1°
CACBC4H4255.5°60.0°
CBCACO97.9°100.0°
CBCACOXT82.2°79.9°
CBCANH180.0°60.0°
CBCANH260.0°63.9°
CCANHA119.8°119.9°
CCACBC451.7°175.0°
CCACBH31171.7°65.0°
CCACBH3268.3°55.0°
CACOOXT179.9°179.9°
CACOXTHXT179.9°180.0°
CCANH59.9°60.0°
CCANH260.1°176.1°
NCACBC4173.5°65.0°
NCACBH3166.4°55.0°
NCACBH3253.6°175.0°
NCACO140.4°20.1°
NCACOXT39.5°160.0°
CANHH2120.0°123.9°
HACACBC468.2°55.1°
HACACBH3151.8°175.0°
HACACBH32171.8°65.0°
HACACO22.2°140.0°
HACACOXT157.7°40.0°
HACANH59.9°180.0°
HACANH2180.0°56.1°
C4CBH31H32120.2°120.1°
CBC4C5H41120.0°119.9°
CBC4C5H42120.0°120.0°
CBC4H41H42119.3°120.0°
CBC4C5C6176.4°180.0°
CBC4C5H5156.4°60.0°
CBC4C5H5263.6°60.0°
H31CBC4C555.5°60.1°
H31CBC4H41175.5°180.0°
H31CBC4H4264.5°59.9°
H32CBC4C564.5°60.0°
H32CBC4H4155.5°59.9°
H32CBC4H42175.5°180.0°
C5C4H41H42119.3°120.0°
C4C5C6H51120.0°120.0°
C4C5C6H52120.0°120.0°
C4C5H51H52117.7°120.0°
C4C5C6C7175.5°180.0°
C4C5C6H6164.5°60.0°
C4C5C6H6255.4°60.0°
H41C4C5C663.6°60.0°
H41C4C5H51176.4°180.0°
H41C4C5H5256.4°60.0°
H42C4C5C656.4°60.0°
H42C4C5H5163.6°60.0°
H42C4C5H52176.4°180.0°
C6C5H51H52117.8°120.0°
C5C6C7H61120.0°120.0°
C5C6C7H62120.0°120.0°
C5C6H61H62116.7°120.0°
C5C6C7O71153.5°0.0°
C5C6C7O7228.8°180.0°
H51C5C6C755.5°60.0°
H51C5C6H61175.5°180.0°
H51C5C6H6264.6°60.0°
H52C5C6C764.5°60.0°
H52C5C6H6155.5°60.0°
H52C5C6H62175.4°180.0°
C7C6H61H62116.7°120.0°
C6C7O71O72178.0°180.0°
C6C7O72HO177.9°180.0°
H61C6C7O7186.5°120.0°
H61C6C7O7291.2°60.0°
H62C6C7O7133.5°120.0°
H62C6C7O72148.8°60.0°
OCOXTHXT0.0°0.0°
O71C7O72HO0.0°0.0°

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PDB entries from 2024-07-17

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