NPH
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| N | CA | sing | 1.47Å | 1.46Å | |
| N | H | sing | 1.01Å | 1.02Å | |
| N | H2 | sing | 1.01Å | 1.02Å | |
| CA | CB | sing | 1.53Å | 1.52Å | |
| CA | C | sing | 1.51Å | 1.52Å | |
| CA | HA | sing | 1.09Å | 1.12Å | |
| CB | SG | sing | 1.81Å | 1.79Å | |
| CB | HB2 | sing | 1.09Å | 1.11Å | |
| CB | HB3 | sing | 1.09Å | 1.12Å | |
| SG | CD | sing | 1.81Å | 1.80Å | |
| CD | CE | sing | 1.51Å | 1.50Å | |
| CD | HD2 | sing | 1.09Å | 1.12Å | |
| CD | HD3 | sing | 1.09Å | 1.12Å | |
| CE | OZ | doub | 1.21Å | 1.42Å | |
| CE | NZ | sing | 1.35Å | 1.31Å | |
| NZ | C6 | sing | 1.40Å | 1.47Å | |
| NZ | HZ | sing | 0.97Å | 1.02Å | |
| C6 | C5 | doub | 1.36Å | 1.40Å | Aromatic |
| C6 | C6A | sing | 1.46Å | 1.39Å | Aromatic |
| C5 | C4A | sing | 1.41Å | 1.39Å | Aromatic |
| C5 | H5 | sing | 1.08Å | 1.10Å | |
| C6A | C10 | sing | 1.41Å | 1.40Å | Aromatic |
| C6A | C7 | doub | 1.40Å | 1.40Å | Aromatic |
| C4A | C4 | doub | 1.41Å | 1.39Å | Aromatic |
| C4A | C1A | sing | 1.41Å | 1.40Å | Aromatic |
| C10 | C1A | sing | 1.47Å | 1.41Å | Aromatic |
| C10 | N10 | doub | 1.33Å | 1.40Å | Aromatic |
| C7 | C8 | sing | 1.37Å | 1.39Å | Aromatic |
| C7 | H7 | sing | 1.08Å | 1.10Å | |
| C4 | C3 | sing | 1.37Å | 1.39Å | Aromatic |
| C4 | H4 | sing | 1.08Å | 1.10Å | |
| C1A | N1 | doub | 1.33Å | 1.40Å | Aromatic |
| N10 | C9 | sing | 1.31Å | 1.41Å | Aromatic |
| C8 | C9 | doub | 1.39Å | 1.40Å | Aromatic |
| C8 | H8 | sing | 1.08Å | 1.10Å | |
| C3 | C2 | doub | 1.39Å | 1.39Å | Aromatic |
| C3 | H3 | sing | 1.08Å | 1.10Å | |
| N1 | C2 | sing | 1.31Å | 1.41Å | Aromatic |
| C9 | H9 | sing | 1.08Å | 1.10Å | |
| C2 | HC2 | sing | 1.08Å | 1.10Å | |
| C | O | doub | 1.21Å | 1.23Å | |
| C | OXT | sing | 1.34Å | 1.33Å | |
| OXT | HXT | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| CA | N | H | 109.1° | 106.7° |
| CA | N | H2 | 112.3° | 106.7° |
| N | CA | CB | 109.2° | 109.4° |
| N | CA | C | 109.6° | 109.4° |
| N | CA | HA | 109.2° | 109.4° |
| H | N | H2 | 112.4° | 106.7° |
| CB | CA | C | 108.2° | 109.6° |
| CB | CA | HA | 110.6° | 109.5° |
| CA | CB | SG | 117.8° | 109.6° |
| CA | CB | HB2 | 109.2° | 109.5° |
| CA | CB | HB3 | 109.2° | 109.5° |
| C | CA | HA | 110.1° | 109.5° |
| CA | C | O | 120.2° | 120.1° |
| CA | C | OXT | 117.0° | 120.0° |
| SG | CB | HB2 | 109.2° | 109.5° |
| SG | CB | HB3 | 109.2° | 109.5° |
| CB | SG | CD | 103.8° | 100.1° |
| HB2 | CB | HB3 | 100.9° | 109.4° |
| SG | CD | CE | 105.6° | 109.5° |
| SG | CD | HD2 | 113.7° | 109.4° |
| SG | CD | HD3 | 113.7° | 109.5° |
| CE | CD | HD2 | 113.7° | 109.4° |
| CE | CD | HD3 | 113.7° | 109.5° |
| CD | CE | OZ | 119.1° | 120.0° |
| CD | CE | NZ | 117.6° | 120.0° |
| HD2 | CD | HD3 | 96.8° | 109.4° |
| OZ | CE | NZ | 123.3° | 120.0° |
| CE | NZ | C6 | 122.6° | 120.0° |
| CE | NZ | HZ | 112.5° | 120.0° |
| C6 | NZ | HZ | 124.8° | 120.0° |
| NZ | C6 | C5 | 121.6° | 119.8° |
| NZ | C6 | C6A | 118.2° | 119.8° |
| C5 | C6 | C6A | 120.3° | 120.4° |
| C6 | C5 | C4A | 120.2° | 121.3° |
| C6 | C5 | H5 | 120.2° | 119.4° |
| C6 | C6A | C10 | 120.1° | 119.8° |
| C6 | C6A | C7 | 119.0° | 121.3° |
| C4A | C5 | H5 | 119.6° | 119.3° |
| C5 | C4A | C4 | 119.2° | 120.5° |
| C5 | C4A | C1A | 120.2° | 120.8° |
| C10 | C6A | C7 | 120.9° | 119.0° |
| C6A | C10 | C1A | 119.6° | 118.6° |
| C6A | C10 | N10 | 119.3° | 120.1° |
| C6A | C7 | C8 | 119.8° | 118.2° |
| C6A | C7 | H7 | 120.3° | 120.9° |
| C4 | C4A | C1A | 120.6° | 118.7° |
| C4A | C4 | C3 | 120.9° | 118.4° |
| C4A | C4 | H4 | 119.5° | 120.8° |
| C4A | C1A | C10 | 119.6° | 119.1° |
| C4A | C1A | N1 | 118.8° | 120.2° |
| C1A | C10 | N10 | 121.1° | 121.3° |
| C10 | C1A | N1 | 121.5° | 120.7° |
| C10 | N10 | C9 | 119.5° | 121.4° |
| C8 | C7 | H7 | 119.9° | 120.9° |
| C7 | C8 | C9 | 119.5° | 119.8° |
| C7 | C8 | H8 | 120.2° | 120.1° |
| C3 | C4 | H4 | 119.6° | 120.8° |
| C4 | C3 | C2 | 119.0° | 119.8° |
| C4 | C3 | H3 | 120.5° | 120.1° |
| C1A | N1 | C2 | 120.1° | 121.5° |
| N10 | C9 | C8 | 121.1° | 121.6° |
| N10 | C9 | H9 | 119.8° | 119.2° |
| C9 | C8 | H8 | 120.4° | 120.1° |
| C8 | C9 | H9 | 119.1° | 119.2° |
| C2 | C3 | H3 | 120.5° | 120.1° |
| C3 | C2 | N1 | 120.6° | 121.5° |
| C3 | C2 | HC2 | 119.0° | 119.2° |
| N1 | C2 | HC2 | 120.3° | 119.3° |
| O | C | OXT | 122.8° | 119.9° |
| C | OXT | HXT | 117.0° | 120.0° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| CA | N | H | H2 | 125.2° | 113.8° |
| N | CA | CB | C | 119.3° | 120.0° |
| N | CA | CB | HA | 120.1° | 120.0° |
| N | CA | C | HA | 120.1° | 119.9° |
| N | CA | CB | SG | 61.2° | 60.0° |
| N | CA | CB | HB2 | 64.1° | 60.0° |
| N | CA | CB | HB3 | 173.5° | 180.0° |
| N | CA | C | O | 61.2° | 30.1° |
| N | CA | C | OXT | 120.8° | 150.0° |
| H | N | CA | CB | 180.0° | 53.7° |
| H | N | CA | C | 61.6° | 173.8° |
| H | N | CA | HA | 59.0° | 66.3° |
| H2 | N | CA | CB | 54.7° | 60.0° |
| H2 | N | CA | C | 173.1° | 60.0° |
| H2 | N | CA | HA | 66.3° | 180.0° |
| CB | CA | C | HA | 121.0° | 120.1° |
| CA | CB | SG | HB2 | 125.3° | 120.0° |
| CA | CB | SG | HB3 | 125.3° | 120.0° |
| CA | CB | HB2 | HB3 | 114.9° | 119.9° |
| CA | CB | SG | CD | 132.3° | 180.0° |
| CB | CA | C | O | 57.8° | 89.9° |
| CB | CA | C | OXT | 120.3° | 90.0° |
| C | CA | CB | SG | 179.6° | 180.0° |
| C | CA | CB | HB2 | 55.1° | 59.9° |
| C | CA | CB | HB3 | 54.3° | 60.0° |
| CA | C | O | OXT | 178.0° | 179.9° |
| CA | C | OXT | HXT | 180.0° | 179.9° |
| HA | CA | CB | SG | 58.9° | 60.0° |
| HA | CA | CB | HB2 | 175.8° | 180.0° |
| HA | CA | CB | HB3 | 66.3° | 60.1° |
| HA | CA | C | O | 178.7° | 150.0° |
| HA | CA | C | OXT | 0.7° | 30.1° |
| SG | CB | HB2 | HB3 | 115.0° | 120.0° |
| CB | SG | CD | CE | 163.2° | 180.0° |
| CB | SG | CD | HD2 | 71.5° | 60.0° |
| CB | SG | CD | HD3 | 37.9° | 59.9° |
| HB2 | CB | SG | CD | 102.4° | 60.0° |
| HB3 | CB | SG | CD | 7.1° | 59.9° |
| SG | CD | CE | HD2 | 125.3° | 120.0° |
| SG | CD | CE | HD3 | 125.3° | 120.1° |
| SG | CD | HD2 | HD3 | 119.6° | 120.0° |
| SG | CD | CE | OZ | 89.7° | 0.0° |
| SG | CD | CE | NZ | 89.6° | 180.0° |
| CE | CD | HD2 | HD3 | 119.6° | 120.0° |
| CD | CE | OZ | NZ | 179.2° | 180.0° |
| CD | CE | NZ | C6 | 178.7° | 174.2° |
| CD | CE | NZ | HZ | 1.3° | 5.7° |
| HD2 | CD | CE | OZ | 145.0° | 120.0° |
| HD2 | CD | CE | NZ | 35.7° | 60.0° |
| HD3 | CD | CE | OZ | 35.6° | 120.0° |
| HD3 | CD | CE | NZ | 145.1° | 59.9° |
| OZ | CE | NZ | C6 | 0.5° | 5.8° |
| OZ | CE | NZ | HZ | 179.5° | 174.3° |
| CE | NZ | C6 | HZ | 180.0° | 179.9° |
| CE | NZ | C6 | C5 | 0.3° | 34.5° |
| CE | NZ | C6 | C6A | 179.9° | 145.8° |
| NZ | C6 | C5 | C6A | 179.8° | 179.7° |
| NZ | C6 | C5 | C4A | 179.4° | 179.9° |
| NZ | C6 | C5 | H5 | 0.6° | 0.0° |
| NZ | C6 | C6A | C10 | 179.6° | 179.8° |
| NZ | C6 | C6A | C7 | 0.4° | 0.6° |
| HZ | NZ | C6 | C5 | 179.7° | 145.5° |
| HZ | NZ | C6 | C6A | 0.1° | 34.2° |
| C6 | C5 | C4A | H5 | 180.0° | 180.0° |
| C5 | C6 | C6A | C10 | 0.2° | 0.5° |
| C5 | C6 | C6A | C7 | 179.8° | 179.7° |
| C6 | C5 | C4A | C4 | 179.8° | 180.0° |
| C6 | C5 | C4A | C1A | 0.1° | 0.0° |
| C6A | C6 | C5 | C4A | 0.3° | 0.3° |
| C6A | C6 | C5 | H5 | 179.6° | 179.7° |
| C6 | C6A | C10 | C7 | 180.0° | 179.2° |
| C6 | C6A | C10 | C1A | 0.1° | 0.4° |
| C6 | C6A | C10 | N10 | 179.9° | 179.6° |
| C6 | C6A | C7 | C8 | 179.8° | 179.7° |
| C6 | C6A | C7 | H7 | 0.1° | 0.5° |
| C5 | C4A | C4 | C1A | 179.9° | 180.0° |
| C5 | C4A | C1A | C10 | 0.2° | 0.1° |
| C5 | C4A | C4 | C3 | 179.6° | 180.0° |
| C5 | C4A | C4 | H4 | 0.4° | 0.0° |
| C5 | C4A | C1A | N1 | 179.7° | 180.0° |
| H5 | C5 | C4A | C4 | 0.3° | 0.0° |
| H5 | C5 | C4A | C1A | 179.8° | 180.0° |
| C6A | C10 | C1A | C4A | 0.3° | 0.2° |
| C6A | C10 | C1A | N10 | 179.9° | 179.9° |
| C10 | C6A | C7 | C8 | 0.2° | 0.4° |
| C10 | C6A | C7 | H7 | 179.8° | 179.8° |
| C6A | C10 | C1A | N1 | 179.5° | 179.8° |
| C6A | C10 | N10 | C9 | 0.2° | 0.1° |
| C7 | C6A | C10 | C1A | 179.8° | 179.7° |
| C7 | C6A | C10 | N10 | 0.1° | 0.4° |
| C6A | C7 | C8 | H7 | 180.0° | 179.8° |
| C6A | C7 | C8 | C9 | 0.1° | 0.2° |
| C6A | C7 | C8 | H8 | 179.9° | 179.8° |
| C4 | C4A | C1A | C10 | 179.9° | 180.0° |
| C4A | C4 | C3 | H4 | 180.0° | 180.0° |
| C4 | C4A | C1A | N1 | 0.2° | 0.0° |
| C4A | C4 | C3 | C2 | 0.1° | 0.0° |
| C4A | C4 | C3 | H3 | 179.9° | 179.9° |
| C4A | C1A | C10 | N1 | 179.9° | 179.9° |
| C4A | C1A | C10 | N10 | 179.7° | 179.9° |
| C1A | C4A | C4 | C3 | 0.3° | 0.0° |
| C1A | C4A | C4 | H4 | 179.6° | 179.9° |
| C4A | C1A | N1 | C2 | 0.1° | 0.0° |
| C1A | C10 | N10 | C9 | 179.9° | 179.9° |
| C10 | C1A | N1 | C2 | 179.8° | 179.9° |
| N10 | C10 | C1A | N1 | 0.4° | 0.2° |
| C10 | N10 | C9 | C8 | 0.3° | 0.1° |
| C10 | N10 | C9 | H9 | 179.7° | 180.0° |
| C7 | C8 | C9 | N10 | 0.2° | 0.0° |
| C7 | C8 | C9 | H8 | 180.0° | 179.9° |
| C7 | C8 | C9 | H9 | 179.8° | 180.0° |
| H7 | C7 | C8 | C9 | 180.0° | 179.9° |
| H7 | C7 | C8 | H8 | 0.0° | 0.0° |
| C4 | C3 | C2 | H3 | 180.0° | 179.9° |
| C4 | C3 | C2 | N1 | 0.2° | 0.0° |
| C4 | C3 | C2 | HC2 | 179.8° | 179.9° |
| H4 | C4 | C3 | C2 | 179.9° | 180.0° |
| H4 | C4 | C3 | H3 | 0.1° | 0.0° |
| C1A | N1 | C2 | C3 | 0.3° | 0.0° |
| C1A | N1 | C2 | HC2 | 179.7° | 179.9° |
| N10 | C9 | C8 | H9 | 180.0° | 180.0° |
| N10 | C9 | C8 | H8 | 179.8° | 180.0° |
| H8 | C8 | C9 | H9 | 0.2° | 0.0° |
| C3 | C2 | N1 | HC2 | 180.0° | 179.9° |
| H3 | C3 | C2 | N1 | 179.8° | 179.9° |
| H3 | C3 | C2 | HC2 | 0.2° | 0.0° |
| O | C | OXT | HXT | 1.9° | 0.0° |
