NP3

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
P	O1P	doub	1.48Å	1.48Å
P	O2P	sing	1.61Å	1.48Å
P	O3P	sing	1.61Å	1.62Å
P	O5'	sing	1.61Å	1.63Å
O2P	HOP2	sing	0.97Å	0.95Å
O3P	HOP3	sing	0.97Å	0.95Å
O5'	C5'	sing	1.43Å	1.44Å
C5'	C4'	sing	1.53Å	1.54Å
C5'	H5'1	sing	1.09Å	1.10Å
C5'	H5'2	sing	1.09Å	1.10Å
C4'	O4'	sing	1.44Å	1.43Å
C4'	C3'	sing	1.55Å	1.54Å
C4'	H4'	sing	1.09Å	1.10Å
O4'	C1'	sing	1.44Å	1.42Å
C1'	N1	sing	1.47Å	1.44Å
C1'	C2'	sing	1.54Å	1.52Å
C1'	H1'	sing	1.09Å	1.10Å
N1	C5	sing	1.36Å	1.36Å	Aromatic
N1	C2	sing	1.36Å	1.34Å	Aromatic
C5	C4	doub	1.35Å	1.34Å	Aromatic
C5	H5	sing	1.08Å	1.08Å
C2	C3	doub	1.35Å	1.33Å	Aromatic
C2	H2	sing	1.08Å	1.08Å
C3	C4	sing	1.41Å	1.39Å	Aromatic
C3	N3	sing	1.48Å	1.31Å
C4	H4	sing	1.08Å	1.08Å
N3	ON1	sing	1.22Å	1.26Å
N3	ON2	doub	1.22Å	1.26Å
C2'	C3'	sing	1.55Å	1.49Å
C2'	H2'1	sing	1.09Å	1.10Å
C2'	H2'2	sing	1.09Å	1.10Å
C3'	O3'	sing	1.43Å	1.44Å
C3'	H3'	sing	1.09Å	1.10Å
O3'	H3T	sing	0.97Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
O1P	P	O2P	119.9°	109.5°
O1P	P	O3P	108.2°	109.5°
O1P	P	O5'	108.5°	109.4°
O2P	P	O3P	109.2°	109.5°
O2P	P	O5'	108.3°	109.5°
P	O2P	HOP2	109.5°	114.0°
O3P	P	O5'	101.1°	109.5°
P	O3P	HOP3	109.5°	114.0°
P	O5'	C5'	119.3°	123.0°
O5'	C5'	C4'	115.8°	109.5°
O5'	C5'	H5'1	107.4°	109.5°
O5'	C5'	H5'2	105.9°	109.5°
C4'	C5'	H5'1	107.4°	109.5°
C4'	C5'	H5'2	106.0°	109.4°
C5'	C4'	O4'	107.7°	110.6°
C5'	C4'	C3'	116.3°	110.7°
C5'	C4'	H4'	105.6°	110.6°
H5'1	C5'	H5'2	114.6°	109.4°
O4'	C4'	C3'	107.8°	103.5°
O4'	C4'	H4'	114.4°	110.6°
C4'	O4'	C1'	106.8°	107.0°
C3'	C4'	H4'	105.4°	110.7°
C4'	C3'	C2'	98.1°	102.1°
C4'	C3'	O3'	111.7°	110.9°
C4'	C3'	H3'	116.1°	110.9°
O4'	C1'	N1	111.4°	110.0°
O4'	C1'	C2'	105.6°	107.3°
O4'	C1'	H1'	111.0°	109.9°
N1	C1'	C2'	110.1°	109.9°
N1	C1'	H1'	106.6°	109.8°
C1'	N1	C5	125.9°	125.6°
C1'	N1	C2	127.8°	125.7°
C2'	C1'	H1'	112.3°	110.0°
C1'	C2'	C3'	101.7°	104.2°
C1'	C2'	H2'1	112.2°	110.5°
C1'	C2'	H2'2	113.8°	110.5°
C5	N1	C2	106.3°	108.7°
N1	C5	C4	106.6°	108.2°
N1	C5	H5	126.7°	125.9°
N1	C2	C3	113.6°	108.2°
N1	C2	H2	123.2°	125.9°
C4	C5	H5	126.7°	125.9°
C5	C4	C3	111.0°	107.4°
C5	C4	H4	124.5°	126.3°
C3	C2	H2	123.2°	125.9°
C2	C3	C4	102.5°	107.4°
C2	C3	N3	127.8°	126.3°
C4	C3	N3	129.6°	126.3°
C3	C4	H4	124.5°	126.3°
C3	N3	ON1	118.3°	120.0°
C3	N3	ON2	120.8°	120.0°
ON1	N3	ON2	120.9°	120.0°
C3'	C2'	H2'1	112.1°	110.5°
C3'	C2'	H2'2	113.8°	110.5°
C2'	C3'	O3'	111.8°	110.9°
C2'	C3'	H3'	116.0°	110.9°
H2'1	C2'	H2'2	103.6°	110.5°
O3'	C3'	H3'	103.4°	110.8°
C3'	O3'	H3T	109.5°	114.0°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O1P	P	O2P	O3P	125.6°	120.0°
O1P	P	O2P	O5'	125.1°	119.9°
O1P	P	O3P	O5'	113.8°	120.0°
O1P	P	O2P	HOP2	43.5°	179.9°
O1P	P	O3P	HOP3	27.4°	60.0°
O1P	P	O5'	C5'	61.2°	55.0°
O2P	P	O3P	O5'	114.0°	120.0°
O2P	P	O3P	HOP3	104.8°	60.0°
O2P	P	O5'	C5'	167.1°	65.0°
O3P	P	O2P	HOP2	169.1°	60.1°
O3P	P	O5'	C5'	52.4°	175.0°
O5'	P	O2P	HOP2	81.6°	60.0°
O5'	P	O3P	HOP3	141.2°	179.9°
P	O5'	C5'	C4'	158.4°	180.0°
P	O5'	C5'	H5'1	81.6°	60.0°
P	O5'	C5'	H5'2	41.3°	60.0°
O5'	C5'	C4'	H5'1	120.0°	120.1°
O5'	C5'	C4'	H5'2	117.1°	120.0°
O5'	C5'	H5'1	H5'2	117.4°	120.0°
O5'	C5'	C4'	O4'	56.6°	66.4°
O5'	C5'	C4'	C3'	64.4°	179.5°
O5'	C5'	C4'	H4'	179.2°	56.4°
C4'	C5'	H5'1	H5'2	117.4°	119.9°
C5'	C4'	O4'	C3'	126.2°	118.6°
C5'	C4'	O4'	H4'	117.0°	122.8°
C5'	C4'	C3'	H4'	116.5°	123.0°
C5'	C4'	O4'	C1'	114.4°	158.5°
C5'	C4'	C3'	C2'	86.0°	155.5°
C5'	C4'	C3'	O3'	156.5°	86.2°
C5'	C4'	C3'	H3'	38.3°	37.3°
H5'1	C5'	C4'	O4'	176.6°	53.6°
H5'1	C5'	C4'	C3'	55.6°	60.5°
H5'1	C5'	C4'	H4'	60.8°	176.5°
H5'2	C5'	C4'	O4'	60.5°	173.5°
H5'2	C5'	C4'	C3'	178.5°	59.4°
H5'2	C5'	C4'	H4'	62.1°	63.6°
O4'	C4'	C3'	H4'	122.6°	118.5°
C4'	O4'	C1'	N1	135.9°	145.9°
C4'	O4'	C1'	C2'	16.4°	26.4°
C4'	O4'	C1'	H1'	105.6°	93.1°
O4'	C4'	C3'	C2'	34.9°	37.0°
O4'	C4'	C3'	O3'	82.5°	155.2°
O4'	C4'	C3'	H3'	159.2°	81.2°
C3'	C4'	O4'	C1'	11.7°	40.0°
C4'	C3'	C2'	C1'	42.7°	20.9°
C4'	C3'	C2'	O3'	117.3°	118.2°
C4'	C3'	C2'	H3'	124.4°	118.2°
C4'	C3'	C2'	H2'1	162.7°	97.8°
C4'	C3'	C2'	H2'2	80.1°	139.6°
C4'	C3'	O3'	H3'	125.6°	123.6°
C4'	C3'	O3'	H3T	36.2°	180.0°
H4'	C4'	O4'	C1'	128.6°	78.6°
H4'	C4'	C3'	C2'	157.5°	81.5°
H4'	C4'	C3'	O3'	40.0°	36.7°
H4'	C4'	C3'	H3'	78.2°	160.3°
O4'	C1'	N1	C2'	116.8°	117.9°
O4'	C1'	N1	H1'	121.2°	121.0°
O4'	C1'	C2'	H1'	121.1°	119.5°
O4'	C1'	N1	C5	107.2°	38.6°
O4'	C1'	N1	C2	74.6°	141.7°
O4'	C1'	C2'	C3'	38.9°	2.0°
O4'	C1'	C2'	H2'1	158.8°	120.7°
O4'	C1'	C2'	H2'2	83.9°	116.7°
N1	C1'	C2'	H1'	118.6°	121.0°
C1'	N1	C5	C2	178.6°	179.8°
C1'	N1	C5	C4	178.4°	180.0°
C1'	N1	C5	H5	1.6°	0.1°
C1'	N1	C2	C3	178.2°	180.0°
C1'	N1	C2	H2	1.9°	0.0°
N1	C1'	C2'	C3'	159.2°	121.5°
N1	C1'	C2'	H2'1	80.8°	119.8°
N1	C1'	C2'	H2'2	36.5°	2.9°
C2'	C1'	N1	C5	136.0°	79.3°
C2'	C1'	N1	C2	42.3°	100.4°
C1'	C2'	C3'	H2'1	120.0°	118.7°
C1'	C2'	C3'	H2'2	122.8°	118.7°
C1'	C2'	H2'1	H2'2	123.2°	122.7°
C1'	C2'	C3'	O3'	74.6°	139.1°
C1'	C2'	C3'	H3'	167.1°	97.3°
H1'	C1'	N1	C5	14.0°	159.6°
H1'	C1'	N1	C2	164.3°	20.7°
H1'	C1'	C2'	C3'	82.2°	117.5°
H1'	C1'	C2'	H2'1	37.8°	1.2°
H1'	C1'	C2'	H2'2	155.0°	123.9°
N1	C5	C4	H5	180.0°	180.0°
C5	N1	C2	C3	0.4°	0.2°
C5	N1	C2	H2	179.6°	179.8°
N1	C5	C4	C3	0.1°	0.1°
N1	C5	C4	H4	180.0°	180.0°
C2	N1	C5	C4	0.2°	0.2°
C2	N1	C5	H5	179.8°	179.8°
N1	C2	C3	H2	180.0°	180.0°
N1	C2	C3	C4	0.4°	0.1°
N1	C2	C3	N3	176.8°	180.0°
C5	C4	C3	C2	0.3°	0.0°
C5	C4	C3	H4	180.0°	179.9°
C5	C4	C3	N3	176.8°	179.8°
H5	C5	C4	C3	179.9°	179.9°
H5	C5	C4	H4	0.0°	0.0°
C2	C3	C4	N3	177.1°	179.8°
C2	C3	C4	H4	179.8°	179.9°
C2	C3	N3	ON1	90.1°	0.0°
C2	C3	N3	ON2	89.7°	180.0°
H2	C2	C3	C4	179.6°	179.8°
H2	C2	C3	N3	3.3°	0.0°
C4	C3	N3	ON1	86.3°	179.8°
C4	C3	N3	ON2	93.9°	0.2°
N3	C3	C4	H4	3.2°	0.1°
C3	N3	ON1	ON2	179.8°	180.0°
C3'	C2'	H2'1	H2'2	123.1°	122.6°
C2'	C3'	O3'	H3'	125.6°	123.6°
C2'	C3'	O3'	H3T	72.6°	67.2°
H2'1	C2'	C3'	O3'	45.4°	20.4°
H2'1	C2'	C3'	H3'	72.9°	144.0°
H2'2	C2'	C3'	O3'	162.6°	102.2°
H2'2	C2'	C3'	H3'	44.3°	21.4°
H3'	C3'	O3'	H3T	161.8°	56.4°

Definition date:	1999-12-20
Last modified:	2011-06-04
Release status:	REL
Processing site:	RCSB
Derived from:	1DK6