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NOD

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C1C2doub0.00Å1.40ÅAromatic
C1C20sing0.00Å1.40ÅAromatic
C1H1sing0.00Å1.10Å
C2C3sing0.00Å1.41ÅAromatic
C2H2sing0.00Å1.10Å
C3C4doub0.00Å1.39ÅAromatic
C3H3sing0.00Å1.10Å
C4O4sing0.00Å1.40Å
C4C5sing0.00Å1.39ÅAromatic
O4C21sing0.00Å1.48Å
C5C6sing0.00Å1.39Å
C5C20doub0.00Å1.39ÅAromatic
C6O6doub0.00Å1.40Å
C6C7sing0.00Å1.39Å
C7C8doub0.00Å1.39ÅAromatic
C7C18sing0.00Å1.39ÅAromatic
C8O8sing0.00Å1.40Å
C8C9sing0.00Å1.40ÅAromatic
O8HO8sing0.00Å0.95Å
C9C10sing0.00Å1.50Å
C9C16doub0.00Å1.39ÅAromatic
C10O10sing0.00Å1.40Å
C10C11sing0.00Å1.55Å
C10H10sing0.00Å1.12Å
O10C1'sing0.00Å1.40Å
C11C12sing0.00Å1.56Å
C11H111sing0.00Å1.12Å
C11H112sing0.00Å1.12Å
C12O12sing0.00Å1.40Å
C12C13sing0.00Å1.53Å
C12C15sing0.00Å1.56Å
O12HO12sing0.00Å0.95Å
C13O13doub0.00Å1.38Å
C13C14sing0.00Å1.47Å
C14O14sing0.00Å1.44Å
C14H141sing0.00Å1.11Å
C14H142sing0.00Å1.11Å
O14HO14sing0.00Å0.95Å
C15C16sing0.00Å1.48Å
C15H151sing0.00Å1.12Å
C15H152sing0.00Å1.11Å
C16C17sing0.00Å1.39ÅAromatic
C17O17sing0.00Å1.38Å
C17C18doub0.00Å1.39ÅAromatic
O17HO17sing0.00Å0.95Å
C18C19sing0.00Å1.40Å
C19O19doub0.00Å1.34Å
C19C20sing0.00Å1.40Å
C21H211sing0.00Å1.11Å
C21H212sing0.00Å1.11Å
C21H213sing0.00Å1.11Å
C1'C2'sing0.00Å1.54Å
C1'O5'sing0.00Å1.44Å
C1'H1'sing0.00Å1.12Å
C2'C3'sing0.00Å1.51Å
C2'H2'1sing0.00Å1.11Å
C2'H2'2sing0.00Å1.11Å
C3'C4'sing0.00Å1.53Å
C3'N3'sing0.00Å1.46Å
C3'H3'sing0.00Å1.12Å
C4'O4'sing0.00Å1.48Å
C4'C5'sing0.00Å1.57Å
C4'H4'sing0.00Å1.11Å
O4'HO4'sing0.00Å0.95Å
C5'O5'sing0.00Å1.48Å
C5'C6'sing0.00Å1.53Å
C5'H5'sing0.00Å1.11Å
C6'H6'1sing0.00Å1.12Å
C6'H6'2sing0.00Å1.12Å
C6'H6'3sing0.00Å1.11Å
N3'C53sing0.00Å1.47Å
N3'HN3'sing0.00Å1.02Å
O16C63sing0.00Å1.50Å
O16H16sing0.00Å0.95Å
C63C53sing0.00Å1.54Å
C63H631sing0.00Å1.12Å
C63H632sing0.00Å1.11Å
C53H531sing0.00Å1.11Å
C53H532sing0.00Å1.11Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C2C1C20121.8°90.0°
C2C1H1119.2°90.0°
C1C2C3117.6°90.0°
C1C2H2120.7°90.0°
C20C1H1119.0°90.0°
C1C20C5120.8°90.0°
C1C20C19118.0°90.0°
C3C2H2121.7°90.0°
C2C3C4119.7°90.0°
C2C3H3120.8°90.0°
C4C3H3119.5°90.0°
C3C4O4119.7°90.0°
C3C4C5122.7°90.0°
O4C4C5117.6°90.0°
C4O4C21114.7°90.0°
C4C5C6123.1°90.0°
C4C5C20117.3°90.0°
O4C21H211114.7°90.0°
O4C21H212110.3°90.0°
O4C21H213110.3°90.0°
C6C5C20119.6°90.0°
C5C6O6122.8°90.0°
C5C6C7119.9°90.0°
C5C20C19121.2°90.0°
O6C6C7117.3°90.0°
C6C7C8119.2°90.0°
C6C7C18120.3°90.0°
C8C7C18120.4°90.0°
C7C8O8119.1°90.0°
C7C8C9118.7°90.0°
C7C18C17120.1°90.0°
C7C18C19121.0°90.0°
O8C8C9122.2°90.0°
C8O8HO8119.1°90.0°
C8C9C10115.4°90.0°
C8C9C16121.6°90.0°
C10C9C16122.9°90.0°
C9C10O10105.8°90.0°
C9C10C11116.6°90.0°
C9C10H10110.8°90.0°
C9C16C15120.3°90.0°
C9C16C17118.6°90.0°
O10C10C11117.9°90.0°
O10C10H10109.2°90.0°
C10O10C1'126.6°90.0°
C11C10H1096.1°90.0°
C10C11C12109.0°90.0°
C10C11H111112.4°90.0°
C10C11H112112.4°90.0°
O10C1'C2'114.4°90.0°
O10C1'O5'114.4°90.0°
O10C1'H1'102.6°90.0°
C12C11H111112.4°90.0°
C12C11H112112.4°90.0°
C11C12O12113.5°90.0°
C11C12C13109.8°90.0°
C11C12C15109.3°90.0°
H111C11H11298.0°90.0°
O12C12C13111.8°90.0°
O12C12C15109.9°90.0°
C12O12HO12113.5°90.0°
C13C12C15102.0°90.0°
C12C13O13117.2°90.0°
C12C13C14119.2°90.0°
C12C15C16113.5°90.0°
C12C15H151110.7°90.0°
C12C15H152110.7°90.0°
O13C13C14123.5°90.0°
C13C14O14109.8°90.0°
C13C14H141112.1°90.0°
C13C14H142112.1°90.0°
O14C14H141112.1°90.0°
O14C14H142112.1°90.0°
C14O14HO14109.8°90.0°
H141C14H14298.3°90.0°
C16C15H151110.8°90.0°
C16C15H152110.8°90.0°
C15C16C17121.0°90.0°
H151C15H15299.5°90.0°
C16C17O17123.0°90.0°
C16C17C18120.5°90.0°
O17C17C18116.4°90.0°
C17O17HO17123.1°90.0°
C17C18C19118.9°90.0°
C18C19O19123.1°90.0°
C18C19C20118.0°90.0°
O19C19C20118.9°90.0°
H211C21H212110.3°90.0°
H211C21H213110.3°90.0°
H212C21H213100.0°90.0°
C2'C1'O5'110.9°90.0°
C2'C1'H1'106.9°90.0°
C1'C2'C3'110.9°90.0°
C1'C2'H2'1111.7°90.0°
C1'C2'H2'2111.6°90.0°
O5'C1'H1'106.8°90.0°
C1'O5'C5'111.7°90.0°
C3'C2'H2'1111.7°90.0°
C3'C2'H2'2111.7°90.0°
C2'C3'C4'119.0°90.0°
C2'C3'N3'114.3°90.0°
C2'C3'H3'121.0°90.0°
H2'1C2'H2'298.7°90.0°
C4'C3'N3'125.7°90.0°
C4'C3'H3'70.0°90.0°
C3'C4'O4'111.2°90.0°
C3'C4'C5'108.4°90.0°
C3'C4'H4'107.3°90.0°
N3'C3'H3'91.5°90.0°
C3'N3'C53118.4°90.0°
C3'N3'HN3'109.0°90.0°
O4'C4'C5'103.5°90.0°
O4'C4'H4'111.9°90.0°
C4'O4'HO4'111.3°90.0°
C5'C4'H4'114.6°90.0°
C4'C5'O5'106.6°90.0°
C4'C5'C6'112.0°90.0°
C4'C5'H5'108.0°90.0°
O5'C5'C6'103.7°90.0°
O5'C5'H5'115.7°90.0°
C6'C5'H5'110.7°90.0°
C5'C6'H6'1112.1°90.0°
C5'C6'H6'2111.3°90.0°
C5'C6'H6'3111.3°90.0°
H6'1C6'H6'2111.2°90.0°
H6'1C6'H6'3111.2°90.0°
H6'2C6'H6'399.1°90.0°
C53N3'HN3'109.0°90.0°
N3'C53C63119.8°90.0°
N3'C53H531108.5°90.0°
N3'C53H532108.5°90.0°
C63O16H16116.4°90.0°
O16C63C53116.4°90.0°
O16C63H631109.7°90.0°
O16C63H632109.7°90.0°
C53C63H631109.7°90.0°
C53C63H632109.7°90.0°
C63C53H531108.5°90.0°
C63C53H532108.5°90.0°
H631C63H632100.5°90.0°
H531C53H532101.5°90.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C2C1C20H1180.0°90.0°
C1C2C3H2180.0°90.0°
C1C2C3C40.2°90.0°
C1C2C3H3179.8°90.0°
C2C1C20C51.9°90.0°
C2C1C20C19179.4°90.0°
C20C1C2C31.3°90.0°
C20C1C2H2178.7°90.0°
C1C20C5C40.9°90.0°
C1C20C5C6179.1°90.0°
C1C20C5C19177.5°90.0°
C1C20C19C18179.5°90.0°
C1C20C19O192.3°90.0°
H1C1C2C3178.7°90.0°
H1C1C2H21.3°90.0°
H1C1C20C5178.1°90.0°
H1C1C20C190.6°90.0°
C2C3C4H3180.0°90.0°
C2C3C4O4179.5°90.0°
C2C3C4C51.2°90.0°
H2C2C3C4179.8°90.0°
H2C2C3H30.2°90.0°
C3C4O4C5178.3°90.0°
C3C4O4C2115.3°90.0°
C3C4C5C6179.4°90.0°
C3C4C5C200.7°90.0°
H3C3C4O40.5°90.0°
H3C3C4C5178.8°90.0°
O4C4C5C61.1°90.0°
O4C4C5C20179.0°90.0°
C4O4C21H211180.0°90.0°
C4O4C21H21254.7°90.0°
C4O4C21H21354.8°90.0°
C5C4O4C21163.1°90.0°
C4C5C6C20180.0°90.0°
C4C5C6O60.1°90.0°
C4C5C6C7179.5°90.0°
C4C5C20C19178.3°90.0°
O4C21H211H212125.2°90.0°
O4C21H211H213125.2°90.0°
O4C21H212H213116.1°90.0°
C5C6O6C7179.6°90.0°
C5C6C7C8178.6°90.0°
C5C6C7C182.4°90.0°
C6C5C20C191.7°90.0°
C20C5C6O6179.9°90.0°
C20C5C6C70.5°90.0°
C5C20C19C182.0°90.0°
C5C20C19O19179.9°90.0°
O6C6C7C81.9°90.0°
O6C6C7C18178.0°90.0°
C6C7C8C18176.2°90.0°
C6C7C8O83.4°90.0°
C6C7C8C9177.7°90.0°
C6C7C18C17178.2°90.0°
C6C7C18C192.1°90.0°
C7C8O8C9178.9°90.0°
C7C8O8HO8180.0°90.0°
C7C8C9C10177.9°90.0°
C7C8C9C161.7°90.0°
C8C7C18C172.1°90.0°
C8C7C18C19178.2°90.0°
C18C7C8O8179.6°90.0°
C18C7C8C91.5°90.0°
C7C18C17C160.4°90.0°
C7C18C17O17177.9°90.0°
C7C18C17C19179.7°90.0°
C7C18C19O19178.2°90.0°
C7C18C19C200.1°90.0°
O8C8C9C100.9°90.0°
O8C8C9C16177.2°90.0°
C9C8O8HO81.2°90.0°
C8C9C10C16176.2°90.0°
C8C9C10O1052.7°90.0°
C8C9C10C11174.1°90.0°
C8C9C10H1065.6°90.0°
C8C9C16C15179.2°90.0°
C8C9C16C174.1°90.0°
C9C10O10C11132.5°90.0°
C9C10O10H10119.3°90.0°
C9C10C11H10117.0°90.0°
C9C10O10C1'159.9°90.0°
C9C10C11C1237.3°90.0°
C9C10C11H11187.9°90.0°
C9C10C11H112162.6°90.0°
C10C9C16C153.3°90.0°
C10C9C16C17179.9°90.0°
C16C9C10O10123.5°90.0°
C16C9C10C119.7°90.0°
C16C9C10H10118.2°90.0°
C9C16C15C1226.1°90.0°
C9C16C15C17176.5°90.0°
C9C16C15H15199.2°90.0°
C9C16C15H152151.3°90.0°
C9C16C17O17179.2°90.0°
C9C16C17C183.5°90.0°
O10C10C11H10115.5°90.0°
O10C10C11C1290.1°90.0°
O10C10C11H111144.6°90.0°
O10C10C11H11235.1°90.0°
C10O10C1'C2'160.7°90.0°
C10O10C1'O5'69.8°90.0°
C10O10C1'H1'45.4°90.0°
C11C10O10C1'67.7°90.0°
C10C11C12H111125.3°90.0°
C10C11C12H112125.3°90.0°
C10C11H111H112118.3°90.0°
C10C11C12O1264.5°90.0°
C10C11C12C13169.6°90.0°
C10C11C12C1558.5°90.0°
H10C10O10C1'40.5°90.0°
H10C10C11C12154.3°90.0°
H10C10C11H11129.0°90.0°
H10C10C11H11280.4°90.0°
O10C1'C2'O5'131.2°90.0°
O10C1'C2'H1'112.8°90.0°
O10C1'O5'H1'112.8°90.0°
O10C1'C2'C3'84.8°90.0°
O10C1'C2'H2'1150.0°90.0°
O10C1'C2'H2'240.5°90.0°
O10C1'O5'C5'66.1°90.0°
C12C11H111H112118.3°90.0°
C11C12O12C13124.8°90.0°
C11C12O12C15122.7°90.0°
C11C12C13C15115.8°90.0°
C11C12O12HO12180.0°90.0°
C11C12C13O1371.2°90.0°
C11C12C13C14111.1°90.0°
C11C12C15C1654.0°90.0°
C11C12C15H15171.3°90.0°
C11C12C15H152179.3°90.0°
H111C11C12O12170.2°90.0°
H111C11C12C1344.3°90.0°
H111C11C12C1566.8°90.0°
H112C11C12O1260.8°90.0°
H112C11C12C1365.1°90.0°
H112C11C12C15176.2°90.0°
O12C12C13C15117.3°90.0°
O12C12C13O13161.9°90.0°
O12C12C13C1415.8°90.0°
O12C12C15C1671.1°90.0°
O12C12C15H151163.6°90.0°
O12C12C15H15254.1°90.0°
C13C12O12HO1255.1°90.0°
C12C13O13C14177.6°90.0°
C12C13C14O14124.1°90.0°
C12C13C14H1411.2°90.0°
C12C13C14H142110.7°90.0°
C13C12C15C16170.2°90.0°
C13C12C15H15144.9°90.0°
C13C12C15H15264.5°90.0°
C15C12O12HO1257.3°90.0°
C15C12C13O1344.6°90.0°
C15C12C13C14133.1°90.0°
C12C15C16H151125.2°90.0°
C12C15C16H152125.3°90.0°
C12C15H151H152116.6°90.0°
C12C15C16C17157.4°90.0°
O13C13C14O1458.3°90.0°
O13C13C14H141176.4°90.0°
O13C13C14H14266.9°90.0°
C13C14O14H141125.3°90.0°
C13C14O14H142125.3°90.0°
C13C14H141H142118.0°90.0°
C13C14O14HO14180.0°90.0°
O14C14H141H142118.0°90.0°
H141C14O14HO1454.7°90.0°
H142C14O14HO1454.7°90.0°
C16C15H151H152116.6°90.0°
C15C16C17O172.6°90.0°
C15C16C17C18179.9°90.0°
H151C15C16C1777.4°90.0°
H152C15C16C1732.1°90.0°
C16C17O17C18177.4°90.0°
C16C17O17HO17180.0°90.0°
C16C17C18C19179.3°90.0°
O17C17C18C191.8°90.0°
C18C17O17HO172.7°90.0°
C17C18C19O191.5°90.0°
C17C18C19C20179.6°90.0°
C18C19O19C20178.1°90.0°
H211C21H212H213116.2°90.0°
C2'C1'O5'H1'116.1°90.0°
C1'C2'C3'H2'1125.2°90.0°
C1'C2'C3'H2'2125.2°90.0°
C1'C2'H2'1H2'2117.6°90.0°
C1'C2'C3'C4'39.3°90.0°
C1'C2'C3'N3'130.0°90.0°
C1'C2'C3'H3'122.2°90.0°
C2'C1'O5'C5'65.1°90.0°
O5'C1'C2'C3'46.4°90.0°
O5'C1'C2'H2'178.8°90.0°
O5'C1'C2'H2'2171.7°90.0°
C1'O5'C5'C4'69.8°90.0°
C1'O5'C5'C6'171.8°90.0°
C1'O5'C5'H5'50.4°90.0°
H1'C1'C2'C3'162.4°90.0°
H1'C1'C2'H2'137.2°90.0°
H1'C1'C2'H2'272.3°90.0°
H1'C1'O5'C5'178.9°90.0°
C3'C2'H2'1H2'2117.7°90.0°
C2'C3'C4'N3'168.0°90.0°
C2'C3'C4'H3'115.2°90.0°
C2'C3'N3'H3'125.3°90.0°
C2'C3'C4'O4'68.4°90.0°
C2'C3'C4'C5'44.7°90.0°
C2'C3'C4'H4'168.9°90.0°
C2'C3'N3'C53155.1°90.0°
C2'C3'N3'HN3'79.7°90.0°
H2'1C2'C3'C4'85.9°90.0°
H2'1C2'C3'N3'104.8°90.0°
H2'1C2'C3'H3'3.0°90.0°
H2'2C2'C3'C4'164.5°90.0°
H2'2C2'C3'N3'4.8°90.0°
H2'2C2'C3'H3'112.6°90.0°
C4'C3'N3'H3'66.2°90.0°
C3'C4'O4'C5'116.2°90.0°
C3'C4'O4'H4'120.0°90.0°
C3'C4'C5'H4'119.8°90.0°
C3'C4'O4'HO4'180.0°90.0°
C3'C4'C5'O5'55.8°90.0°
C3'C4'C5'C6'168.6°90.0°
C3'C4'C5'H5'69.2°90.0°
C4'C3'N3'C5336.5°90.0°
C4'C3'N3'HN3'88.8°90.0°
N3'C3'C4'O4'123.6°90.0°
N3'C3'C4'C5'123.3°90.0°
N3'C3'C4'H4'1.0°90.0°
C3'N3'C53HN3'125.2°90.0°
C3'N3'C53C6325.3°90.0°
C3'N3'C53H53199.9°90.0°
C3'N3'C53H532150.6°90.0°
H3'C3'C4'O4'46.8°90.0°
H3'C3'C4'C5'159.9°90.0°
H3'C3'C4'H4'75.9°90.0°
H3'C3'N3'C5329.7°90.0°
H3'C3'N3'HN3'155.0°90.0°
O4'C4'C5'H4'122.1°90.0°
O4'C4'C5'O5'62.3°90.0°
O4'C4'C5'C6'50.4°90.0°
O4'C4'C5'H5'172.6°90.0°
C5'C4'O4'HO4'63.8°90.0°
C4'C5'O5'C6'118.4°90.0°
C4'C5'O5'H5'120.2°90.0°
C4'C5'C6'H5'120.6°90.0°
C4'C5'C6'H6'1180.0°90.0°
C4'C5'C6'H6'254.8°90.0°
C4'C5'C6'H6'354.7°90.0°
H4'C4'O4'HO4'60.0°90.0°
H4'C4'C5'O5'175.6°90.0°
H4'C4'C5'C6'71.6°90.0°
H4'C4'C5'H5'50.6°90.0°
O5'C5'C6'H5'124.8°90.0°
O5'C5'C6'H6'165.3°90.0°
O5'C5'C6'H6'259.9°90.0°
O5'C5'C6'H6'3169.4°90.0°
C5'C6'H6'1H6'2125.3°90.0°
C5'C6'H6'1H6'3125.3°90.0°
C5'C6'H6'2H6'3117.2°90.0°
H5'C5'C6'H6'159.4°90.0°
H5'C5'C6'H6'2175.4°90.0°
H5'C5'C6'H6'365.9°90.0°
H6'1C6'H6'2H6'3117.1°90.0°
N3'C53C63O16141.5°90.0°
N3'C53C63H531125.2°90.0°
N3'C53C63H532125.3°90.0°
N3'C53C63H63116.3°90.0°
N3'C53C63H63293.2°90.0°
N3'C53H531H532114.2°90.0°
HN3'N3'C53C6399.9°90.0°
HN3'N3'C53H531134.9°90.0°
HN3'N3'C53H53225.3°90.0°
O16C63C53H631125.2°90.0°
O16C63C53H632125.3°90.0°
O16C63H631H632115.5°90.0°
O16C63C53H53116.3°90.0°
O16C63C53H53293.2°90.0°
H16O16C63C53180.0°90.0°
H16O16C63H63154.7°90.0°
H16O16C63H63254.7°90.0°
C53C63H631H632115.5°90.0°
C63C53H531H532114.2°90.0°
H631C63C53H531108.9°90.0°
H631C63C53H532141.5°90.0°
H632C63C53H531141.6°90.0°
H632C63C53H53232.1°90.0°

226262

PDB entries from 2024-10-16

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