NMS
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| P | OP2 | sing | 1.62Å | 1.45Å | |
| P | OP1 | doub | 1.50Å | 1.45Å | |
| P | O5' | sing | 1.62Å | 1.57Å | |
| P | OP3 | sing | 1.62Å | 51.52Å | |
| OP2 | HOP2 | sing | 0.98Å | 0.95Å | |
| O5' | C5' | sing | 1.42Å | 1.42Å | |
| N1 | C6 | sing | 1.39Å | 1.37Å | |
| N1 | C2 | sing | 1.41Å | 1.36Å | |
| N1 | C1' | sing | 1.43Å | 1.46Å | |
| C6 | C5 | doub | 1.34Å | 1.33Å | |
| C6 | H6 | sing | 1.09Å | 1.10Å | |
| C2 | O2 | doub | 1.23Å | 1.22Å | |
| C2 | N3 | sing | 1.40Å | 1.37Å | |
| N3 | C4 | sing | 1.39Å | 1.37Å | |
| N3 | HN3 | sing | 1.02Å | 1.02Å | |
| C4 | O4 | doub | 1.23Å | 1.20Å | |
| C4 | C5 | sing | 1.49Å | 1.45Å | |
| C5 | C5M | sing | 1.50Å | 1.50Å | |
| C5M | H71 | sing | 1.09Å | 1.12Å | |
| C5M | H72 | sing | 1.09Å | 1.11Å | |
| C5M | H73 | sing | 1.09Å | 1.11Å | |
| C2' | C1' | sing | 1.52Å | 1.44Å | |
| C2' | C3' | sing | 1.51Å | 1.49Å | |
| C2' | O6' | sing | 1.41Å | 1.40Å | |
| C2' | H2' | sing | 1.10Å | 1.12Å | |
| C5' | C4' | sing | 1.52Å | 1.50Å | |
| C5' | H5' | sing | 1.09Å | 1.11Å | |
| C5' | H5'' | sing | 1.09Å | 1.11Å | |
| C4' | O4' | sing | 1.44Å | 1.47Å | |
| C4' | C3' | sing | 1.52Å | 1.49Å | |
| C4' | H4' | sing | 1.09Å | 1.11Å | |
| O4' | C1' | sing | 1.44Å | 1.44Å | |
| C1' | H1' | sing | 1.09Å | 1.11Å | |
| C3' | O3' | sing | 1.43Å | 1.41Å | |
| C3' | H3' | sing | 1.09Å | 1.12Å | |
| O3' | HO3' | sing | 0.97Å | 0.95Å | |
| O6' | C7' | sing | 1.42Å | 1.45Å | |
| C7' | C8' | sing | 1.51Å | 1.50Å | |
| C7' | H7'1 | sing | 1.09Å | 1.11Å | |
| C7' | H7'2 | sing | 1.09Å | 1.11Å | |
| C8' | O8' | doub | 1.23Å | 1.20Å | |
| C8' | N9' | sing | 1.39Å | 1.37Å | |
| N9' | C10 | sing | 1.45Å | 1.46Å | |
| N9' | H9' | sing | 1.02Å | 1.02Å | |
| C10 | H101 | sing | 1.09Å | 1.12Å | |
| C10 | H102 | sing | 1.09Å | 1.12Å | |
| C10 | H103 | sing | 1.09Å | 1.12Å | |
| OP3 | HOP3 | sing | 0.98Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| OP2 | P | OP1 | 122.5° | 115.3° |
| OP2 | P | O5' | 111.5° | 103.8° |
| OP2 | P | OP3 | 130.2° | 103.3° |
| P | OP2 | HOP2 | 122.5° | 119.0° |
| OP1 | P | O5' | 103.9° | 115.0° |
| OP1 | P | OP3 | 65.2° | 114.9° |
| O5' | P | OP3 | 113.2° | 102.9° |
| P | O5' | C5' | 117.3° | 118.5° |
| P | OP3 | HOP3 | 130.2° | 119.0° |
| O5' | C5' | C4' | 106.0° | 108.6° |
| O5' | C5' | H5' | 113.5° | 109.2° |
| O5' | C5' | H5'' | 113.5° | 109.3° |
| C6 | N1 | C2 | 122.0° | 120.2° |
| C6 | N1 | C1' | 124.6° | 118.5° |
| N1 | C6 | C5 | 122.4° | 124.5° |
| N1 | C6 | H6 | 120.2° | 114.7° |
| C2 | N1 | C1' | 113.3° | 121.3° |
| N1 | C2 | O2 | 124.4° | 123.8° |
| N1 | C2 | N3 | 115.4° | 115.1° |
| N1 | C1' | C2' | 112.8° | 112.5° |
| N1 | C1' | O4' | 105.8° | 109.0° |
| N1 | C1' | H1' | 108.6° | 107.3° |
| C5 | C6 | H6 | 117.4° | 120.7° |
| C6 | C5 | C4 | 118.9° | 118.4° |
| C6 | C5 | C5M | 121.6° | 123.6° |
| O2 | C2 | N3 | 120.2° | 121.1° |
| C2 | N3 | C4 | 126.0° | 127.0° |
| C2 | N3 | HN3 | 117.0° | 116.4° |
| C4 | N3 | HN3 | 117.0° | 116.6° |
| N3 | C4 | O4 | 118.7° | 123.6° |
| N3 | C4 | C5 | 115.3° | 114.8° |
| O4 | C4 | C5 | 126.0° | 121.6° |
| C4 | C5 | C5M | 119.5° | 118.0° |
| C5 | C5M | H71 | 107.9° | 109.7° |
| C5 | C5M | H72 | 121.6° | 109.8° |
| C5 | C5M | H73 | 107.9° | 109.7° |
| H71 | C5M | H72 | 107.9° | 109.4° |
| H71 | C5M | H73 | 102.0° | 109.4° |
| H72 | C5M | H73 | 107.9° | 108.9° |
| C1' | C2' | C3' | 103.0° | 102.0° |
| C1' | C2' | O6' | 106.8° | 112.6° |
| C1' | C2' | H2' | 118.4° | 111.1° |
| C2' | C1' | O4' | 105.6° | 106.5° |
| C2' | C1' | H1' | 108.7° | 112.6° |
| C3' | C2' | O6' | 117.6° | 112.3° |
| C3' | C2' | H2' | 107.7° | 110.1° |
| C2' | C3' | C4' | 98.4° | 102.1° |
| C2' | C3' | O3' | 112.5° | 110.3° |
| C2' | C3' | H3' | 115.5° | 114.0° |
| O6' | C2' | H2' | 104.0° | 108.6° |
| C2' | O6' | C7' | 106.2° | 111.9° |
| C4' | C5' | H5' | 113.5° | 110.1° |
| C4' | C5' | H5'' | 113.5° | 110.1° |
| C5' | C4' | O4' | 105.2° | 108.2° |
| C5' | C4' | C3' | 120.3° | 113.3° |
| C5' | C4' | H4' | 103.1° | 109.3° |
| H5' | C5' | H5'' | 97.0° | 109.6° |
| O4' | C4' | C3' | 102.0° | 105.9° |
| O4' | C4' | H4' | 121.1° | 107.7° |
| C4' | O4' | C1' | 106.9° | 109.2° |
| C3' | C4' | H4' | 106.3° | 112.2° |
| C4' | C3' | O3' | 111.8° | 107.9° |
| C4' | C3' | H3' | 116.1° | 114.5° |
| O4' | C1' | H1' | 115.4° | 108.9° |
| O3' | C3' | H3' | 102.9° | 107.8° |
| C3' | O3' | HO3' | 112.5° | 106.4° |
| O6' | C7' | C8' | 107.3° | 110.7° |
| O6' | C7' | H7'1 | 113.0° | 108.5° |
| O6' | C7' | H7'2 | 113.0° | 109.2° |
| C8' | C7' | H7'1 | 113.0° | 109.3° |
| C8' | C7' | H7'2 | 113.0° | 110.1° |
| C7' | C8' | O8' | 124.0° | 122.8° |
| C7' | C8' | N9' | 112.6° | 111.6° |
| H7'1 | C7' | H7'2 | 97.4° | 109.0° |
| O8' | C8' | N9' | 123.4° | 125.6° |
| C8' | N9' | C10 | 116.3° | 123.0° |
| C8' | N9' | H9' | 118.8° | 118.5° |
| C10 | N9' | H9' | 124.8° | 118.5° |
| N9' | C10 | H101 | 109.7° | 110.1° |
| N9' | C10 | H102 | 116.3° | 110.2° |
| N9' | C10 | H103 | 109.7° | 110.2° |
| H101 | C10 | H102 | 109.7° | 108.9° |
| H101 | C10 | H103 | 100.4° | 108.8° |
| H102 | C10 | H103 | 109.7° | 108.7° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| OP2 | P | OP1 | O5' | 127.3° | 120.7° |
| OP2 | P | OP1 | OP3 | 123.3° | 120.0° |
| OP2 | P | O5' | OP3 | 157.4° | 107.4° |
| OP2 | P | O5' | C5' | 48.5° | 53.2° |
| OP2 | P | OP3 | HOP3 | 180.0° | 78.5° |
| OP1 | P | O5' | OP3 | 68.7° | 125.8° |
| OP1 | P | OP2 | HOP2 | 180.0° | 48.7° |
| OP1 | P | O5' | C5' | 177.6° | 179.9° |
| OP1 | P | OP3 | HOP3 | 67.3° | 48.0° |
| O5' | P | OP2 | HOP2 | 56.1° | 175.4° |
| P | O5' | C5' | C4' | 178.2° | 180.0° |
| P | O5' | C5' | H5' | 56.5° | 59.9° |
| P | O5' | C5' | H5'' | 53.0° | 59.9° |
| O5' | P | OP3 | HOP3 | 27.8° | 173.8° |
| OP3 | P | OP2 | HOP2 | 96.4° | 77.5° |
| OP3 | P | O5' | C5' | 108.9° | 54.2° |
| O5' | C5' | C4' | H5' | 125.3° | 119.5° |
| O5' | C5' | C4' | H5'' | 125.3° | 119.6° |
| O5' | C5' | H5' | H5'' | 119.4° | 119.6° |
| O5' | C5' | C4' | O4' | 72.5° | 62.4° |
| O5' | C5' | C4' | C3' | 41.6° | 179.5° |
| O5' | C5' | C4' | H4' | 159.7° | 54.6° |
| C6 | N1 | C2 | C1' | 179.1° | 179.9° |
| N1 | C6 | C5 | H6 | 180.0° | 180.0° |
| C6 | N1 | C2 | O2 | 179.7° | 180.0° |
| C6 | N1 | C2 | N3 | 0.9° | 0.0° |
| N1 | C6 | C5 | C4 | 0.9° | 0.0° |
| N1 | C6 | C5 | C5M | 179.9° | 180.0° |
| C6 | N1 | C1' | C2' | 90.0° | 85.6° |
| C6 | N1 | C1' | O4' | 25.0° | 32.3° |
| C6 | N1 | C1' | H1' | 149.4° | 150.0° |
| C2 | N1 | C6 | C5 | 1.0° | 0.0° |
| C2 | N1 | C6 | H6 | 179.0° | 180.0° |
| N1 | C2 | O2 | N3 | 179.4° | 179.9° |
| N1 | C2 | N3 | C4 | 0.8° | 0.0° |
| N1 | C2 | N3 | HN3 | 179.2° | 179.9° |
| C2 | N1 | C1' | C2' | 89.0° | 94.3° |
| C2 | N1 | C1' | O4' | 156.0° | 147.8° |
| C2 | N1 | C1' | H1' | 31.5° | 30.1° |
| C1' | N1 | C6 | C5 | 179.9° | 180.0° |
| C1' | N1 | C6 | H6 | 0.0° | 0.0° |
| C1' | N1 | C2 | O2 | 0.6° | 0.1° |
| C1' | N1 | C2 | N3 | 180.0° | 180.0° |
| N1 | C1' | C2' | O4' | 115.1° | 119.3° |
| N1 | C1' | C2' | H1' | 120.5° | 121.4° |
| N1 | C1' | C2' | C3' | 83.5° | 150.0° |
| N1 | C1' | C2' | O6' | 151.9° | 89.4° |
| N1 | C1' | C2' | H2' | 35.2° | 32.7° |
| N1 | C1' | O4' | C4' | 116.9° | 132.9° |
| N1 | C1' | O4' | H1' | 120.1° | 116.8° |
| C6 | C5 | C4 | N3 | 0.7° | 0.0° |
| C6 | C5 | C4 | O4 | 179.9° | 180.0° |
| C6 | C5 | C4 | C5M | 179.3° | 180.0° |
| C6 | C5 | C5M | H71 | 54.7° | 64.2° |
| C6 | C5 | C5M | H72 | 180.0° | 56.0° |
| C6 | C5 | C5M | H73 | 54.7° | 175.6° |
| H6 | C6 | C5 | C4 | 179.1° | 180.0° |
| H6 | C6 | C5 | C5M | 0.1° | 0.0° |
| O2 | C2 | N3 | C4 | 179.7° | 179.9° |
| O2 | C2 | N3 | HN3 | 0.3° | 0.0° |
| C2 | N3 | C4 | HN3 | 180.0° | 179.9° |
| C2 | N3 | C4 | O4 | 180.0° | 179.9° |
| C2 | N3 | C4 | C5 | 0.8° | 0.1° |
| N3 | C4 | O4 | C5 | 179.2° | 180.0° |
| N3 | C4 | C5 | C5M | 180.0° | 180.0° |
| HN3 | N3 | C4 | O4 | 0.0° | 0.0° |
| HN3 | N3 | C4 | C5 | 179.3° | 180.0° |
| O4 | C4 | C5 | C5M | 0.8° | 0.0° |
| C4 | C5 | C5M | H71 | 124.5° | 115.8° |
| C4 | C5 | C5M | H72 | 0.7° | 124.0° |
| C4 | C5 | C5M | H73 | 126.0° | 4.4° |
| C5 | C5M | H71 | H72 | 133.0° | 120.5° |
| C5 | C5M | H71 | H73 | 113.4° | 120.4° |
| C5 | C5M | H72 | H73 | 125.2° | 120.1° |
| H71 | C5M | H72 | H73 | 109.5° | 119.5° |
| C1' | C2' | C3' | O6' | 117.1° | 120.8° |
| C1' | C2' | C3' | H2' | 125.9° | 118.0° |
| C1' | C2' | O6' | H2' | 126.0° | 123.5° |
| C2' | C1' | O4' | C4' | 2.9° | 11.3° |
| C1' | C2' | C3' | C4' | 47.1° | 37.1° |
| C2' | C1' | O4' | H1' | 120.1° | 121.6° |
| C1' | C2' | C3' | O3' | 165.1° | 77.4° |
| C1' | C2' | C3' | H3' | 77.2° | 161.1° |
| C1' | C2' | O6' | C7' | 67.7° | 174.5° |
| C3' | C2' | O6' | H2' | 119.0° | 122.0° |
| C2' | C3' | C4' | C5' | 160.2° | 86.9° |
| C2' | C3' | C4' | O4' | 44.4° | 31.5° |
| C2' | C3' | C4' | O3' | 118.4° | 116.3° |
| C2' | C3' | C4' | H3' | 123.8° | 123.7° |
| C2' | C3' | C4' | H4' | 83.3° | 148.7° |
| C3' | C2' | C1' | O4' | 31.5° | 30.7° |
| C3' | C2' | C1' | H1' | 156.0° | 88.5° |
| C2' | C3' | O3' | H3' | 125.0° | 125.1° |
| C2' | C3' | O3' | HO3' | 180.0° | 95.6° |
| C3' | C2' | O6' | C7' | 177.3° | 60.0° |
| O6' | C2' | C3' | C4' | 70.0° | 158.0° |
| O6' | C2' | C1' | O4' | 93.0° | 151.3° |
| O6' | C2' | C1' | H1' | 31.4° | 32.1° |
| O6' | C2' | C3' | O3' | 47.9° | 43.5° |
| O6' | C2' | C3' | H3' | 165.7° | 78.0° |
| C2' | O6' | C7' | C8' | 132.0° | 180.0° |
| C2' | O6' | C7' | H7'1 | 6.7° | 60.1° |
| C2' | O6' | C7' | H7'2 | 102.8° | 58.6° |
| H2' | C2' | C3' | C4' | 173.0° | 80.9° |
| H2' | C2' | C1' | O4' | 150.2° | 86.6° |
| H2' | C2' | C1' | H1' | 85.3° | 154.2° |
| H2' | C2' | C3' | O3' | 69.0° | 164.6° |
| H2' | C2' | C3' | H3' | 48.7° | 43.1° |
| H2' | C2' | O6' | C7' | 58.3° | 62.0° |
| C4' | C5' | H5' | H5'' | 119.4° | 121.2° |
| C5' | C4' | O4' | C3' | 126.3° | 121.7° |
| C5' | C4' | O4' | H4' | 116.1° | 118.1° |
| C5' | C4' | C3' | H4' | 116.4° | 124.4° |
| C5' | C4' | O4' | C1' | 153.2° | 109.0° |
| C5' | C4' | C3' | O3' | 81.3° | 156.8° |
| C5' | C4' | C3' | H3' | 36.4° | 36.8° |
| H5' | C5' | C4' | O4' | 52.8° | 57.1° |
| H5' | C5' | C4' | C3' | 166.9° | 60.0° |
| H5' | C5' | C4' | H4' | 75.1° | 174.1° |
| H5'' | C5' | C4' | O4' | 162.2° | 178.0° |
| H5'' | C5' | C4' | C3' | 83.6° | 60.9° |
| H5'' | C5' | C4' | H4' | 34.4° | 65.0° |
| O4' | C4' | C3' | H4' | 127.8° | 117.2° |
| C4' | O4' | C1' | H1' | 123.0° | 110.3° |
| O4' | C4' | C3' | O3' | 162.9° | 84.7° |
| O4' | C4' | C3' | H3' | 79.4° | 155.2° |
| C3' | C4' | O4' | C1' | 26.8° | 12.8° |
| C4' | C3' | O3' | H3' | 125.3° | 124.2° |
| C4' | C3' | O3' | HO3' | 70.3° | 15.2° |
| H4' | C4' | O4' | C1' | 90.8° | 133.0° |
| H4' | C4' | C3' | O3' | 35.1° | 32.5° |
| H4' | C4' | C3' | H3' | 152.8° | 87.6° |
| H3' | C3' | O3' | HO3' | 55.0° | 139.4° |
| O6' | C7' | C8' | H7'1 | 125.3° | 119.4° |
| O6' | C7' | C8' | H7'2 | 125.3° | 120.9° |
| O6' | C7' | H7'1 | H7'2 | 119.0° | 118.9° |
| O6' | C7' | C8' | O8' | 178.8° | 0.6° |
| O6' | C7' | C8' | N9' | 0.6° | 179.4° |
| C8' | C7' | H7'1 | H7'2 | 118.9° | 120.4° |
| C7' | C8' | O8' | N9' | 178.1° | 180.0° |
| C7' | C8' | N9' | C10 | 178.6° | 180.0° |
| C7' | C8' | N9' | H9' | 1.4° | 0.1° |
| H7'1 | C7' | C8' | O8' | 53.6° | 120.0° |
| H7'1 | C7' | C8' | N9' | 124.7° | 60.0° |
| H7'2 | C7' | C8' | O8' | 55.9° | 120.3° |
| H7'2 | C7' | C8' | N9' | 125.9° | 59.7° |
| O8' | C8' | N9' | C10 | 3.1° | 0.0° |
| O8' | C8' | N9' | H9' | 176.9° | 179.9° |
| C8' | N9' | C10 | H9' | 180.0° | 179.9° |
| C8' | N9' | C10 | H101 | 54.7° | 150.3° |
| C8' | N9' | C10 | H102 | 180.0° | 30.2° |
| C8' | N9' | C10 | H103 | 54.7° | 89.7° |
| N9' | C10 | H101 | H102 | 129.0° | 120.9° |
| N9' | C10 | H101 | H103 | 115.5° | 120.8° |
| N9' | C10 | H102 | H103 | 125.3° | 120.9° |
| H9' | N9' | C10 | H101 | 125.2° | 29.8° |
| H9' | N9' | C10 | H102 | 0.0° | 149.9° |
| H9' | N9' | C10 | H103 | 125.3° | 90.2° |
| H101 | C10 | H102 | H103 | 109.4° | 118.3° |
