NMM
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| CAA | NH2 | sing | 1.46Å | 1.47Å | |
| CAA | HAA1 | sing | 1.09Å | 1.10Å | |
| CAA | HAA2 | sing | 1.09Å | 1.10Å | |
| CAA | HAA3 | sing | 1.09Å | 1.10Å | |
| NH2 | CZ | sing | 1.37Å | 1.33Å | |
| NH2 | HH2 | sing | 0.97Å | 1.00Å | |
| CZ | NH1 | doub | 1.30Å | 1.33Å | |
| CZ | NE | sing | 1.37Å | 1.34Å | |
| NH1 | HH1 | sing | 0.97Å | 1.00Å | |
| NE | CD | sing | 1.47Å | 1.48Å | |
| NE | HE | sing | 0.97Å | 1.00Å | |
| CD | CG | sing | 1.53Å | 1.53Å | |
| CD | HD3 | sing | 1.09Å | 1.10Å | |
| CD | HD2 | sing | 1.09Å | 1.10Å | |
| CG | CB | sing | 1.53Å | 1.53Å | |
| CG | HG3 | sing | 1.09Å | 1.10Å | |
| CG | HG2 | sing | 1.09Å | 1.10Å | |
| CB | CA | sing | 1.53Å | 1.53Å | |
| CB | HB3 | sing | 1.09Å | 1.10Å | |
| CB | HB2 | sing | 1.09Å | 1.10Å | |
| CA | C | sing | 1.51Å | 1.53Å | |
| CA | N | sing | 1.47Å | 1.47Å | |
| CA | HA | sing | 1.09Å | 1.10Å | |
| C | O | doub | 1.21Å | 1.27Å | |
| C | OXT | sing | 1.34Å | 1.26Å | |
| OXT | HXT | sing | 0.97Å | 0.95Å | |
| N | H | sing | 1.01Å | 1.00Å | |
| N | H2 | sing | 1.01Å | 1.00Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| NH2 | CAA | HAA1 | 109.4° | 109.5° |
| NH2 | CAA | HAA2 | 109.5° | 109.4° |
| NH2 | CAA | HAA3 | 109.5° | 109.5° |
| CAA | NH2 | CZ | 121.3° | 120.0° |
| CAA | NH2 | HH2 | 119.3° | 120.0° |
| HAA1 | CAA | HAA2 | 109.5° | 109.4° |
| HAA1 | CAA | HAA3 | 109.4° | 109.5° |
| HAA2 | CAA | HAA3 | 109.5° | 109.5° |
| CZ | NH2 | HH2 | 119.3° | 120.0° |
| NH2 | CZ | NH1 | 116.0° | 120.0° |
| NH2 | CZ | NE | 120.5° | 120.0° |
| NH1 | CZ | NE | 123.5° | 120.0° |
| CZ | NH1 | HH1 | 109.8° | 120.0° |
| CZ | NE | CD | 122.2° | 120.0° |
| CZ | NE | HE | 118.9° | 120.0° |
| CD | NE | HE | 118.9° | 120.0° |
| NE | CD | CG | 116.5° | 109.5° |
| NE | CD | HD3 | 105.6° | 109.5° |
| NE | CD | HD2 | 107.2° | 109.5° |
| CG | CD | HD3 | 105.6° | 109.5° |
| CG | CD | HD2 | 107.2° | 109.5° |
| CD | CG | CB | 106.2° | 109.5° |
| CD | CG | HG3 | 111.3° | 109.5° |
| CD | CG | HG2 | 110.5° | 109.4° |
| HD3 | CD | HD2 | 115.1° | 109.5° |
| CB | CG | HG3 | 111.3° | 109.5° |
| CB | CG | HG2 | 110.6° | 109.4° |
| CG | CB | CA | 110.4° | 109.5° |
| CG | CB | HB3 | 108.9° | 109.5° |
| CG | CB | HB2 | 109.1° | 109.5° |
| HG3 | CG | HG2 | 107.0° | 109.5° |
| CA | CB | HB3 | 109.0° | 109.4° |
| CA | CB | HB2 | 109.1° | 109.5° |
| CB | CA | C | 109.7° | 109.5° |
| CB | CA | N | 108.9° | 109.4° |
| CB | CA | HA | 109.0° | 109.5° |
| HB3 | CB | HB2 | 110.2° | 109.5° |
| C | CA | N | 107.4° | 109.5° |
| C | CA | HA | 110.5° | 109.5° |
| CA | C | O | 114.5° | 120.0° |
| CA | C | OXT | 118.3° | 120.0° |
| N | CA | HA | 111.2° | 109.4° |
| CA | N | H | 109.5° | 106.6° |
| CA | N | H2 | 109.5° | 106.7° |
| O | C | OXT | 127.1° | 120.0° |
| C | OXT | HXT | 109.5° | 120.0° |
| H | N | H2 | 109.5° | 106.7° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| NH2 | CAA | HAA1 | HAA2 | 120.0° | 119.9° |
| NH2 | CAA | HAA1 | HAA3 | 120.0° | 120.0° |
| NH2 | CAA | HAA2 | HAA3 | 120.1° | 120.0° |
| CAA | NH2 | CZ | HH2 | 180.0° | 180.0° |
| CAA | NH2 | CZ | NH1 | 0.5° | 0.0° |
| CAA | NH2 | CZ | NE | 178.4° | 180.0° |
| HAA1 | CAA | HAA2 | HAA3 | 120.0° | 120.0° |
| HAA1 | CAA | NH2 | CZ | 175.6° | 60.0° |
| HAA1 | CAA | NH2 | HH2 | 4.4° | 120.0° |
| HAA2 | CAA | NH2 | CZ | 64.4° | 60.0° |
| HAA2 | CAA | NH2 | HH2 | 115.6° | 120.0° |
| HAA3 | CAA | NH2 | CZ | 55.6° | 180.0° |
| HAA3 | CAA | NH2 | HH2 | 124.4° | 0.0° |
| NH2 | CZ | NH1 | NE | 178.9° | 179.9° |
| NH2 | CZ | NH1 | HH1 | 180.0° | 180.0° |
| NH2 | CZ | NE | CD | 0.6° | 180.0° |
| NH2 | CZ | NE | HE | 179.4° | 0.1° |
| HH2 | NH2 | CZ | NH1 | 179.5° | 180.0° |
| HH2 | NH2 | CZ | NE | 1.6° | 0.1° |
| NH1 | CZ | NE | CD | 178.2° | 0.1° |
| NH1 | CZ | NE | HE | 1.8° | 180.0° |
| NE | CZ | NH1 | HH1 | 1.1° | 0.1° |
| CZ | NE | CD | HE | 180.0° | 180.0° |
| CZ | NE | CD | CG | 158.5° | 180.0° |
| CZ | NE | CD | HD3 | 84.7° | 60.0° |
| CZ | NE | CD | HD2 | 38.5° | 60.0° |
| NE | CD | CG | HD3 | 116.8° | 120.0° |
| NE | CD | CG | HD2 | 120.0° | 120.0° |
| NE | CD | HD3 | HD2 | 118.0° | 120.0° |
| NE | CD | CG | CB | 76.3° | 180.0° |
| NE | CD | CG | HG3 | 162.4° | 60.0° |
| NE | CD | CG | HG2 | 43.7° | 60.1° |
| HE | NE | CD | CG | 21.4° | 0.0° |
| HE | NE | CD | HD3 | 95.4° | 120.0° |
| HE | NE | CD | HD2 | 141.4° | 120.0° |
| CG | CD | HD3 | HD2 | 118.0° | 120.0° |
| CD | CG | CB | HG3 | 121.2° | 120.0° |
| CD | CG | CB | HG2 | 120.0° | 119.9° |
| CD | CG | HG3 | HG2 | 120.8° | 120.0° |
| CD | CG | CB | CA | 149.6° | 180.0° |
| CD | CG | CB | HB3 | 90.8° | 60.0° |
| CD | CG | CB | HB2 | 29.6° | 60.0° |
| HD3 | CD | CG | CB | 40.4° | 60.0° |
| HD3 | CD | CG | HG3 | 80.8° | 180.0° |
| HD3 | CD | CG | HG2 | 160.5° | 60.0° |
| HD2 | CD | CG | CB | 163.6° | 60.0° |
| HD2 | CD | CG | HG3 | 42.4° | 60.0° |
| HD2 | CD | CG | HG2 | 76.3° | 179.9° |
| CB | CG | HG3 | HG2 | 120.9° | 120.0° |
| CG | CB | CA | HB3 | 119.6° | 120.0° |
| CG | CB | CA | HB2 | 120.0° | 120.0° |
| CG | CB | HB3 | HB2 | 119.7° | 120.0° |
| CG | CB | CA | C | 145.1° | 175.0° |
| CG | CB | CA | N | 27.8° | 64.9° |
| CG | CB | CA | HA | 93.7° | 55.0° |
| HG3 | CG | CB | CA | 28.4° | 60.0° |
| HG3 | CG | CB | HB3 | 148.0° | 180.0° |
| HG3 | CG | CB | HB2 | 91.6° | 60.0° |
| HG2 | CG | CB | CA | 90.4° | 60.0° |
| HG2 | CG | CB | HB3 | 29.2° | 59.9° |
| HG2 | CG | CB | HB2 | 149.6° | 179.9° |
| CA | CB | HB3 | HB2 | 119.8° | 120.0° |
| CB | CA | C | N | 118.3° | 120.0° |
| CB | CA | C | HA | 120.3° | 120.0° |
| CB | CA | N | HA | 120.2° | 119.9° |
| CB | CA | C | O | 169.7° | 100.0° |
| CB | CA | C | OXT | 6.0° | 80.0° |
| CB | CA | N | H | 90.3° | 173.8° |
| CB | CA | N | H2 | 149.7° | 60.0° |
| HB3 | CB | CA | C | 25.5° | 55.0° |
| HB3 | CB | CA | N | 91.8° | 175.0° |
| HB3 | CB | CA | HA | 146.7° | 65.1° |
| HB2 | CB | CA | C | 94.9° | 65.0° |
| HB2 | CB | CA | N | 147.8° | 55.1° |
| HB2 | CB | CA | HA | 26.3° | 175.0° |
| C | CA | N | HA | 121.1° | 120.0° |
| CA | C | O | OXT | 175.2° | 180.0° |
| CA | C | OXT | HXT | 175.1° | 180.0° |
| C | CA | N | H | 28.4° | 53.7° |
| C | CA | N | H2 | 91.6° | 60.0° |
| N | CA | C | O | 51.5° | 20.0° |
| N | CA | C | OXT | 124.2° | 160.0° |
| CA | N | H | H2 | 120.0° | 113.7° |
| HA | CA | C | O | 70.0° | 140.0° |
| HA | CA | C | OXT | 114.3° | 40.0° |
| HA | CA | N | H | 149.5° | 66.3° |
| HA | CA | N | H2 | 29.5° | 180.0° |
| O | C | OXT | HXT | 0.0° | 0.0° |
