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NMD

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C5'C4'sing1.53Å1.54Å
C5'O5'sing1.43Å1.43Å
C5'H5'1sing1.09Å1.12Å
C5'H5'2sing1.09Å1.11Å
C4'O4'sing1.44Å1.43Å
C4'C3'sing1.54Å1.52Å
C4'H4'sing1.09Å1.11Å
O4'C1'sing1.44Å1.43Å
C3'O3'sing1.43Å1.42Å
C3'C2'sing1.55Å1.53Å
C3'H3'sing1.09Å1.12Å
O3'HO3'sing0.97Å0.95Å
C2'N2'sing1.47Å1.45Å
C2'C1'sing1.55Å1.53Å
C2'H2'sing1.09Å1.12Å
N2'C7Bsing1.35Å1.35Å
N2'HN2'sing0.97Å1.02Å
C1'N9Asing1.46Å1.47Å
C1'H1'sing1.09Å1.11Å
N9AC8Asing1.36Å1.37ÅAromatic
N9AC4Asing1.37Å1.38ÅAromatic
C8AN7Adoub1.30Å1.31ÅAromatic
C8AH8Asing1.08Å1.10Å
N7AC5Asing1.35Å1.39ÅAromatic
C5AC6Adoub1.40Å1.43ÅAromatic
C5AC4Asing1.41Å1.39ÅAromatic
C6AN6Asing1.38Å1.35Å
C6AN1Asing1.33Å1.36ÅAromatic
N6AC11sing1.46Å1.47Å
N6AH6Asing0.97Å1.02Å
N1AC2Adoub1.32Å1.35ÅAromatic
C2AN3Asing1.32Å1.34ÅAromatic
C2AH2Asing1.08Å1.10Å
N3AC4Adoub1.33Å1.36ÅAromatic
C11C1sing1.51Å1.52Å
C11H111sing1.09Å1.12Å
C11H112sing1.09Å1.12Å
C1C9doub1.41Å1.44ÅAromatic
C1C2sing1.36Å1.43ÅAromatic
C9C8sing1.41Å1.43ÅAromatic
C9C10sing1.42Å1.45ÅAromatic
C8C7doub1.36Å1.43ÅAromatic
C8H8sing1.08Å1.10Å
C7C6sing1.39Å1.42ÅAromatic
C7H7sing1.08Å1.10Å
C6C5doub1.36Å1.42ÅAromatic
C6H6sing1.08Å1.10Å
C2C3doub1.39Å1.42ÅAromatic
C2H2sing1.08Å1.10Å
C10C5sing1.41Å1.43ÅAromatic
C10C4doub1.41Å1.42ÅAromatic
C5H5sing1.08Å1.10Å
C3C4sing1.36Å1.42ÅAromatic
C3H3sing1.08Å1.10Å
C4H4sing1.08Å1.10Å
C7BO7Bdoub1.22Å1.24Å
C7BC6Bsing1.48Å1.48Å
C6BC5Bdoub1.39Å1.42ÅAromatic
C6BC1Bsing1.40Å1.43ÅAromatic
C5BC4Bsing1.39Å1.42ÅAromatic
C5BH5Bsing1.08Å1.10Å
C4BO2Msing1.36Å1.38Å
C4BC3Bdoub1.39Å1.43ÅAromatic
O2MC2Msing1.43Å1.43Å
C2MH2M1sing1.09Å1.11Å
C2MH2M2sing1.09Å1.12Å
C2MH2M3sing1.09Å1.12Å
C3BC2Bsing1.39Å1.44ÅAromatic
C3BH3Bsing1.08Å1.10Å
C1BC2Bdoub1.39Å1.43ÅAromatic
C1BH1Bsing1.08Å1.10Å
C2BO1Msing1.36Å1.38Å
O1MC1Msing1.43Å1.43Å
C1MH1M1sing1.09Å1.11Å
C1MH1M2sing1.09Å1.11Å
C1MH1M3sing1.09Å1.12Å
O5'HO5'sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C4'C5'O5'110.3°109.5°
C4'C5'H5'1111.9°109.5°
C4'C5'H5'2111.9°109.4°
C5'C4'O4'113.3°110.0°
C5'C4'C3'113.3°109.9°
C5'C4'H4'102.8°109.8°
O5'C5'H5'1111.9°109.4°
O5'C5'H5'2111.9°109.5°
C5'O5'HO5'110.3°106.8°
H5'1C5'H5'298.4°109.5°
O4'C4'C3'105.6°107.3°
O4'C4'H4'111.0°109.9°
C4'O4'C1'110.4°107.0°
C3'C4'H4'111.0°109.8°
C4'C3'O3'112.0°110.7°
C4'C3'C2'101.8°104.1°
C4'C3'H3'114.8°110.5°
O4'C1'C2'106.4°103.5°
O4'C1'N9A110.9°110.7°
O4'C1'H1'113.2°110.6°
O3'C3'C2'114.6°110.5°
O3'C3'H3'102.1°110.4°
C3'O3'HO3'111.9°106.8°
C2'C3'H3'112.1°110.5°
C3'C2'N2'114.2°110.9°
C3'C2'C1'103.1°102.1°
C3'C2'H2'111.7°110.9°
N2'C2'C1'112.3°110.9°
N2'C2'H2'102.4°110.8°
C2'N2'C7B125.9°120.0°
C2'N2'HN2'121.1°120.0°
C1'C2'H2'113.6°110.9°
C2'C1'N9A116.2°110.8°
C2'C1'H1'107.6°110.5°
C7BN2'HN2'113.0°120.0°
N2'C7BO7B122.0°120.0°
N2'C7BC6B116.7°120.0°
N9AC1'H1'102.7°110.5°
C1'N9AC8A129.2°126.3°
C1'N9AC4A125.6°126.3°
C8AN9AC4A105.2°107.4°
N9AC8AN7A114.4°110.0°
N9AC8AH8A124.8°125.0°
N9AC4AC5A106.0°106.0°
N9AC4AN3A127.3°134.9°
N7AC8AH8A120.8°125.0°
C8AN7AC5A104.1°109.5°
N7AC5AC6A133.5°134.7°
N7AC5AC4A110.4°107.1°
C6AC5AC4A116.1°118.2°
C5AC6AN6A125.6°120.8°
C5AC6AN1A117.7°118.5°
C5AC4AN3A126.8°119.1°
N6AC6AN1A116.7°120.7°
C6AN6AC11126.9°120.0°
C6AN6AH6A106.1°120.0°
C6AN1AC2A119.7°121.2°
C11N6AH6A106.1°120.0°
N6AC11C1116.0°109.5°
N6AC11H111109.9°109.5°
N6AC11H112109.8°109.4°
N1AC2AN3A127.7°122.4°
N1AC2AH2A116.4°118.8°
N3AC2AH2A115.9°118.8°
C2AN3AC4A112.0°120.7°
C1C11H111109.8°109.5°
C1C11H112109.9°109.4°
C11C1C9121.4°120.2°
C11C1C2119.1°120.1°
H111C11H112100.3°109.4°
C9C1C2119.5°119.6°
C1C9C8123.0°121.3°
C1C9C10119.0°119.4°
C1C2C3121.2°121.0°
C1C2H2119.7°119.5°
C8C9C10118.0°119.4°
C9C8C7121.4°119.6°
C9C8H8119.5°120.2°
C9C10C5120.1°119.4°
C9C10C4119.9°119.3°
C7C8H8119.1°120.2°
C8C7C6120.1°121.0°
C8C7H7120.1°119.5°
C6C7H7119.8°119.5°
C7C6C5119.6°121.0°
C7C6H6120.1°119.5°
C5C6H6120.3°119.5°
C6C5C10120.9°119.7°
C6C5H5119.4°120.2°
C3C2H2119.1°119.5°
C2C3C4119.7°121.0°
C2C3H3120.1°119.5°
C5C10C4120.0°121.3°
C10C5H5119.7°120.1°
C10C4C3120.7°119.7°
C10C4H4119.7°120.1°
C4C3H3120.2°119.5°
C3C4H4119.5°120.2°
O7BC7BC6B121.3°120.0°
C7BC6BC5B118.3°120.1°
C7BC6BC1B121.6°120.1°
C5BC6BC1B120.1°119.8°
C6BC5BC4B121.1°120.0°
C6BC5BH5B119.5°120.0°
C6BC1BC2B120.1°119.9°
C6BC1BH1B120.0°120.1°
C4BC5BH5B119.3°120.0°
C5BC4BO2M117.8°120.0°
C5BC4BC3B118.5°120.1°
O2MC4BC3B123.7°120.0°
C4BO2MC2M119.8°106.8°
C4BC3BC2B121.2°120.2°
C4BC3BH3B119.3°119.9°
O2MC2MH2M1119.9°109.5°
O2MC2MH2M2108.5°109.5°
O2MC2MH2M3108.5°109.5°
H2M1C2MH2M2108.5°109.5°
H2M1C2MH2M3108.5°109.5°
H2M2C2MH2M3101.5°109.5°
C2BC3BH3B119.6°119.9°
C3BC2BC1B119.0°120.1°
C3BC2BO1M123.5°119.9°
C2BC1BH1B120.0°120.0°
C1BC2BO1M117.6°119.9°
C2BO1MC1M118.3°106.8°
O1MC1MH1M1118.3°109.4°
O1MC1MH1M2109.0°109.5°
O1MC1MH1M3109.0°109.5°
H1M1C1MH1M2109.0°109.4°
H1M1C1MH1M3109.0°109.5°
H1M2C1MH1M3101.1°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C4'C5'O5'H5'1125.3°120.1°
C4'C5'O5'H5'2125.3°119.9°
C4'C5'H5'1H5'2117.8°120.0°
C5'C4'O4'C3'124.6°119.6°
C5'C4'O4'H4'115.1°121.0°
C5'C4'C3'H4'115.1°120.9°
C5'C4'O4'C1'102.0°146.0°
C5'C4'C3'O3'147.2°119.6°
C5'C4'C3'C2'89.9°121.7°
C5'C4'C3'H3'31.5°3.0°
C4'C5'O5'HO5'180.0°179.9°
O5'C5'H5'1H5'2117.8°120.0°
O5'C5'C4'O4'157.1°62.0°
O5'C5'C4'C3'82.7°180.0°
O5'C5'C4'H4'37.2°59.1°
H5'1C5'C4'O4'77.6°177.9°
H5'1C5'C4'C3'42.6°59.9°
H5'1C5'C4'H4'162.5°61.0°
H5'1C5'O5'HO5'54.7°60.0°
H5'2C5'C4'O4'31.8°57.9°
H5'2C5'C4'C3'152.0°60.1°
H5'2C5'C4'H4'88.1°179.0°
H5'2C5'O5'HO5'54.7°60.0°
O4'C4'C3'H4'120.4°119.5°
O4'C4'C3'O3'88.3°120.8°
O4'C4'C3'C2'34.6°2.0°
O4'C4'C3'H3'156.0°116.6°
C4'O4'C1'C2'0.7°40.0°
C4'O4'C1'N9A126.5°158.7°
C4'O4'C1'H1'118.7°78.4°
C3'C4'O4'C1'22.6°26.5°
C4'C3'O3'C2'115.3°114.8°
C4'C3'O3'H3'123.3°122.7°
C4'C3'C2'H3'123.2°118.7°
C4'C3'O3'HO3'179.9°65.2°
C4'C3'C2'N2'155.3°139.1°
C4'C3'C2'C1'33.2°20.9°
C4'C3'C2'H2'89.1°97.3°
H4'C4'O4'C1'142.9°92.9°
H4'C4'C3'O3'32.1°1.3°
H4'C4'C3'C2'155.0°117.4°
H4'C4'C3'H3'83.6°123.9°
O4'C1'C2'C3'21.0°37.0°
O4'C1'C2'N2'144.3°155.2°
O4'C1'C2'N9A124.0°118.6°
O4'C1'C2'H1'121.6°118.4°
O4'C1'C2'H2'100.0°81.2°
O4'C1'N9AH1'121.2°122.9°
O4'C1'N9AC8A101.9°28.5°
O4'C1'N9AC4A78.0°151.8°
O3'C3'C2'H3'115.8°122.5°
O3'C3'C2'N2'34.2°20.3°
O3'C3'C2'C1'87.8°98.0°
O3'C3'C2'H2'149.8°143.8°
C2'C3'O3'HO3'64.8°180.0°
C3'C2'N2'C1'116.9°112.8°
C3'C2'N2'H2'120.9°123.6°
C3'C2'C1'H2'121.0°118.2°
C3'C2'N2'C7B124.3°94.3°
C3'C2'N2'HN2'55.7°85.7°
C3'C2'C1'N9A145.0°155.6°
C3'C2'C1'H1'100.6°81.5°
H3'C3'O3'HO3'56.7°57.5°
H3'C3'C2'N2'81.5°102.2°
H3'C3'C2'C1'156.4°139.5°
H3'C3'C2'H2'34.1°21.3°
N2'C2'C1'H2'115.6°123.6°
C2'N2'C7BHN2'180.0°180.0°
N2'C2'C1'N9A91.7°86.2°
N2'C2'C1'H1'22.7°36.7°
C2'N2'C7BO7B1.7°0.0°
C2'N2'C7BC6B178.0°180.0°
C1'C2'N2'C7B118.8°152.9°
C1'C2'N2'HN2'61.2°27.1°
C2'C1'N9AH1'117.1°122.9°
C2'C1'N9AC8A19.7°85.7°
C2'C1'N9AC4A160.4°94.0°
H2'C2'N2'C7B3.4°29.3°
H2'C2'N2'HN2'176.6°150.7°
H2'C2'C1'N9A24.0°37.4°
H2'C2'C1'H1'138.4°160.3°
N2'C7BO7BC6B179.6°180.0°
N2'C7BC6BC5B0.5°0.3°
N2'C7BC6BC1B179.4°180.0°
HN2'N2'C7BO7B178.3°179.9°
HN2'N2'C7BC6B2.1°0.0°
C1'N9AC8AC4A179.9°179.7°
C1'N9AC8AN7A180.0°180.0°
C1'N9AC8AH8A0.0°0.0°
C1'N9AC4AC5A179.9°179.9°
C1'N9AC4AN3A0.1°0.8°
H1'C1'N9AC8A136.8°151.4°
H1'C1'N9AC4A43.2°28.9°
N9AC8AN7AH8A180.0°180.0°
N9AC8AN7AC5A0.1°0.0°
C8AN9AC4AC5A0.0°0.4°
C8AN9AC4AN3A180.0°179.4°
C4AN9AC8AN7A0.0°0.2°
C4AN9AC8AH8A179.9°179.7°
N9AC4AC5AN7A0.0°0.4°
N9AC4AC5AC6A180.0°179.8°
N9AC4AC5AN3A180.0°179.2°
N9AC4AN3AC2A179.9°179.6°
C8AN7AC5AC6A180.0°180.0°
C8AN7AC5AC4A0.1°0.2°
H8AC8AN7AC5A179.9°180.0°
N7AC5AC6AC4A179.9°179.8°
N7AC5AC6AN6A0.0°0.0°
N7AC5AC6AN1A180.0°179.9°
N7AC5AC4AN3A179.9°179.6°
C5AC6AN6AN1A179.9°180.0°
C5AC6AN6AC110.4°179.9°
C5AC6AN6AH6A124.9°0.0°
C5AC6AN1AC2A0.1°0.1°
C6AC5AC4AN3A0.0°0.6°
C4AC5AC6AN6A180.0°179.7°
C4AC5AC6AN1A0.1°0.3°
C5AC4AN3AC2A0.1°0.6°
C6AN6AC11H6A125.3°180.0°
N6AC6AN1AC2A180.0°180.0°
C6AN6AC11C1108.1°175.5°
C6AN6AC11H111126.7°64.4°
C6AN6AC11H11217.3°55.6°
N1AC6AN6AC11179.7°0.1°
N1AC6AN6AH6A55.0°180.0°
C6AN1AC2AN3A0.0°0.1°
C6AN1AC2AH2A180.0°180.0°
N6AC11C1H111125.3°120.1°
N6AC11C1H112125.3°119.9°
N6AC11H111H112115.6°119.9°
N6AC11C1C9175.5°77.1°
N6AC11C1C24.5°103.2°
H6AN6AC11C1126.7°4.5°
H6AN6AC11H1111.4°115.6°
H6AN6AC11H112108.0°124.5°
N1AC2AN3AH2A180.0°179.9°
N1AC2AN3AC4A0.1°0.4°
H2AC2AN3AC4A179.8°179.7°
C1C11H111H112115.6°120.0°
C11C1C9C2180.0°179.7°
C11C1C9C80.0°0.5°
C11C1C9C10179.8°179.8°
C11C1C2C3179.8°180.0°
C11C1C2H20.2°0.0°
H111C11C1C959.2°162.8°
H111C11C1C2120.8°16.9°
H112C11C1C950.1°42.8°
H112C11C1C2129.8°136.9°
C1C9C8C10179.8°179.2°
C1C9C8C7180.0°179.7°
C1C9C8H80.0°0.5°
C9C1C2C30.2°0.2°
C9C1C2H2179.8°179.7°
C1C9C10C5179.9°179.7°
C1C9C10C40.1°0.4°
C2C1C9C8180.0°179.7°
C2C1C9C100.2°0.5°
C1C2C3H2180.0°179.9°
C1C2C3C40.1°0.1°
C1C2C3H3179.9°180.0°
C9C8C7H8180.0°179.8°
C9C8C7C60.1°0.2°
C9C8C7H7179.9°179.7°
C8C9C10C50.1°0.5°
C8C9C10C4179.9°179.7°
C10C9C8C70.2°0.5°
C10C9C8H8179.9°179.7°
C9C10C5C60.0°0.2°
C9C10C5C4179.9°179.9°
C9C10C5H5180.0°179.8°
C9C10C4C30.0°0.1°
C9C10C4H4180.0°179.8°
C8C7C6H7180.0°179.9°
C8C7C6C50.0°0.1°
C8C7C6H6180.0°180.0°
H8C8C7C6179.9°180.0°
H8C8C7H70.1°0.1°
C7C6C5H6180.0°179.9°
C7C6C5C100.1°0.1°
C7C6C5H5179.9°179.9°
H7C7C6C5180.0°180.0°
H7C7C6H60.0°0.1°
C6C5C10H5180.0°180.0°
C6C5C10C4179.9°180.0°
H6C6C5C10179.9°180.0°
H6C6C5H50.1°0.0°
C2C3C4C100.0°0.1°
C2C3C4H3180.0°179.9°
C2C3C4H4180.0°180.0°
H2C2C3C4179.9°180.0°
H2C2C3H30.1°0.1°
C5C10C4C3180.0°180.0°
C5C10C4H40.0°0.1°
C4C10C5H50.1°0.0°
C10C4C3H4180.0°179.9°
C10C4C3H3180.0°180.0°
H3C3C4H40.0°0.1°
O7BC7BC6BC5B179.9°179.7°
O7BC7BC6BC1B0.2°0.0°
C7BC6BC5BC1B179.8°179.7°
C7BC6BC5BC4B180.0°179.7°
C7BC6BC5BH5B0.0°0.3°
C7BC6BC1BC2B179.7°180.0°
C7BC6BC1BH1B0.3°0.0°
C6BC5BC4BH5B180.0°179.4°
C6BC5BC4BO2M179.8°179.8°
C6BC5BC4BC3B0.3°0.6°
C5BC6BC1BC2B0.1°0.3°
C5BC6BC1BH1B179.9°179.7°
C1BC6BC5BC4B0.2°0.6°
C1BC6BC5BH5B179.8°180.0°
C6BC1BC2BC3B0.3°0.1°
C6BC1BC2BH1B180.0°180.0°
C6BC1BC2BO1M179.7°180.0°
C5BC4BO2MC3B179.4°179.6°
C5BC4BO2MC2M60.2°179.7°
C5BC4BC3BC2B0.2°0.4°
C5BC4BC3BH3B179.8°179.8°
H5BC5BC4BO2M0.2°0.4°
H5BC5BC4BC3B179.7°180.0°
C4BO2MC2MH2M1180.0°180.0°
C4BO2MC2MH2M254.7°60.0°
C4BO2MC2MH2M354.7°60.0°
O2MC4BC3BC2B179.6°180.0°
O2MC4BC3BH3B0.4°0.1°
C3BC4BO2MC2M120.3°0.0°
C4BC3BC2BH3B180.0°179.8°
C4BC3BC2BC1B0.1°0.1°
C4BC3BC2BO1M179.9°180.0°
O2MC2MH2M1H2M2125.3°120.0°
O2MC2MH2M1H2M3125.2°120.0°
O2MC2MH2M2H2M3114.1°120.0°
H2M1C2MH2M2H2M3114.2°120.0°
C3BC2BC1BO1M180.0°179.9°
C3BC2BC1BH1B179.8°180.0°
C3BC2BO1MC1M81.5°0.1°
H3BC3BC2BC1B179.9°179.9°
H3BC3BC2BO1M0.1°0.1°
C1BC2BO1MC1M98.5°180.0°
H1BC1BC2BO1M0.2°0.0°
C2BO1MC1MH1M1180.0°180.0°
C2BO1MC1MH1M254.7°60.0°
C2BO1MC1MH1M354.8°60.0°
O1MC1MH1M1H1M2125.3°120.0°
O1MC1MH1M1H1M3125.2°120.0°
O1MC1MH1M2H1M3114.7°120.1°
H1M1C1MH1M2H1M3114.7°120.0°

247536

PDB entries from 2026-01-14

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