NLY
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| NZ | CE | sing | 1.47Å | 1.44Å | |
| CE | CD | sing | 1.53Å | 1.53Å | |
| CD | CG | sing | 1.53Å | 1.44Å | |
| CG | CB | sing | 1.53Å | 1.53Å | |
| CB | N | sing | 1.47Å | 1.46Å | |
| N | CA | sing | 1.47Å | 1.45Å | |
| CA | C | sing | 1.51Å | 1.51Å | |
| O | C | doub | 1.21Å | 1.24Å | |
| N | H | sing | 1.01Å | 1.00Å | |
| CB | H3 | sing | 1.09Å | 1.10Å | |
| CB | H4 | sing | 1.09Å | 1.10Å | |
| CG | H5 | sing | 1.09Å | 1.10Å | |
| CG | H6 | sing | 1.09Å | 1.10Å | |
| CD | H7 | sing | 1.09Å | 1.10Å | |
| CD | H8 | sing | 1.09Å | 1.10Å | |
| CE | H9 | sing | 1.09Å | 1.10Å | |
| CE | H10 | sing | 1.09Å | 1.10Å | |
| NZ | H11 | sing | 1.01Å | 1.00Å | |
| NZ | H12 | sing | 1.01Å | 1.00Å | |
| CA | HA2 | sing | 1.09Å | 1.10Å | |
| CA | HA3 | sing | 1.09Å | 1.10Å | |
| C | OXT | sing | 1.34Å | 21.23Å | |
| OXT | HXT | sing | 0.97Å | 0.00Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| NZ | CE | CD | 108.5° | 109.5° |
| NZ | CE | H9 | 109.7° | 109.4° |
| NZ | CE | H10 | 109.7° | 109.5° |
| CE | NZ | H11 | 109.5° | 111.0° |
| CE | NZ | H12 | 109.5° | 111.0° |
| CE | CD | CG | 109.6° | 109.5° |
| CE | CD | H7 | 109.4° | 109.5° |
| CE | CD | H8 | 109.5° | 109.5° |
| CD | CE | H9 | 109.7° | 109.5° |
| CD | CE | H10 | 109.7° | 109.5° |
| CD | CG | CB | 115.7° | 109.5° |
| CD | CG | H5 | 107.9° | 109.5° |
| CD | CG | H6 | 107.9° | 109.5° |
| CG | CD | H7 | 109.4° | 109.5° |
| CG | CD | H8 | 109.4° | 109.5° |
| CG | CB | N | 104.3° | 109.5° |
| CG | CB | H3 | 110.8° | 109.4° |
| CG | CB | H4 | 110.7° | 109.4° |
| CB | CG | H5 | 107.9° | 109.5° |
| CB | CG | H6 | 107.9° | 109.4° |
| CB | N | CA | 117.5° | 111.0° |
| CB | N | H | 107.4° | 111.0° |
| N | CB | H3 | 110.8° | 109.5° |
| N | CB | H4 | 110.8° | 109.5° |
| N | CA | C | 113.6° | 109.5° |
| CA | N | H | 107.4° | 111.1° |
| N | CA | HA2 | 108.4° | 109.5° |
| N | CA | HA3 | 108.4° | 109.5° |
| CA | C | O | 120.6° | 120.0° |
| C | CA | HA2 | 108.4° | 109.5° |
| C | CA | HA3 | 108.4° | 109.4° |
| CA | C | OXT | 93.1° | 120.0° |
| O | C | OXT | 59.9° | 120.0° |
| H3 | CB | H4 | 109.5° | 109.5° |
| H5 | CG | H6 | 109.5° | 109.4° |
| H7 | CD | H8 | 109.5° | 109.4° |
| H9 | CE | H10 | 109.5° | 109.5° |
| H11 | NZ | H12 | 109.5° | 111.0° |
| HA2 | CA | HA3 | 109.4° | 109.5° |
| C | OXT | HXT | 90.0° | 117.0° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| NZ | CE | CD | H9 | 119.8° | 119.9° |
| NZ | CE | CD | H10 | 119.9° | 120.0° |
| NZ | CE | CD | CG | 175.4° | 180.0° |
| NZ | CE | CD | H7 | 64.6° | 60.0° |
| NZ | CE | CD | H8 | 55.4° | 60.0° |
| NZ | CE | H9 | H10 | 120.5° | 120.0° |
| CE | NZ | H11 | H12 | 120.0° | 123.9° |
| CE | CD | CG | H7 | 120.0° | 120.0° |
| CE | CD | CG | H8 | 120.0° | 120.0° |
| CE | CD | CG | CB | 177.4° | 180.0° |
| CE | CD | CG | H5 | 56.5° | 60.0° |
| CE | CD | CG | H6 | 61.7° | 60.0° |
| CE | CD | H7 | H8 | 120.0° | 120.0° |
| CD | CE | H9 | H10 | 120.5° | 120.1° |
| CD | CE | NZ | H11 | 180.0° | 180.0° |
| CD | CE | NZ | H12 | 60.0° | 56.1° |
| CD | CG | CB | H5 | 120.9° | 120.1° |
| CD | CG | CB | H6 | 120.9° | 120.0° |
| CD | CG | CB | N | 150.8° | 180.0° |
| CD | CG | CB | H3 | 31.6° | 60.0° |
| CD | CG | CB | H4 | 90.1° | 60.0° |
| CD | CG | H5 | H6 | 117.2° | 120.0° |
| CG | CD | H7 | H8 | 119.9° | 120.0° |
| CG | CD | CE | H9 | 55.5° | 60.0° |
| CG | CD | CE | H10 | 64.8° | 60.0° |
| CG | CB | N | H3 | 119.2° | 120.0° |
| CG | CB | N | H4 | 119.2° | 119.9° |
| CG | CB | N | CA | 85.0° | 180.0° |
| CG | CB | N | H | 153.9° | 56.1° |
| CG | CB | H3 | H4 | 122.4° | 119.9° |
| CB | CG | H5 | H6 | 117.2° | 119.9° |
| CB | CG | CD | H7 | 62.6° | 59.9° |
| CB | CG | CD | H8 | 57.4° | 60.0° |
| CB | N | CA | H | 121.2° | 123.9° |
| CB | N | CA | C | 106.5° | 180.0° |
| N | CB | H3 | H4 | 122.4° | 120.1° |
| N | CB | CG | H5 | 88.3° | 59.9° |
| N | CB | CG | H6 | 29.9° | 60.0° |
| CB | N | CA | HA2 | 132.9° | 60.0° |
| CB | N | CA | HA3 | 14.2° | 60.0° |
| N | CA | C | HA2 | 120.6° | 120.0° |
| N | CA | C | HA3 | 120.6° | 120.0° |
| N | CA | C | O | 126.5° | 0.0° |
| CA | N | CB | H3 | 34.2° | 60.1° |
| CA | N | CB | H4 | 155.9° | 60.0° |
| N | CA | HA2 | HA3 | 118.1° | 120.0° |
| N | CA | C | OXT | 70.0° | 180.0° |
| CA | C | O | OXT | 74.3° | 180.0° |
| C | CA | N | H | 14.7° | 56.0° |
| C | CA | HA2 | HA3 | 118.1° | 119.9° |
| CA | C | OXT | HXT | 90.0° | 179.9° |
| O | C | CA | HA2 | 112.9° | 120.0° |
| O | C | CA | HA3 | 5.9° | 120.0° |
| O | C | OXT | HXT | 90.0° | 0.0° |
| H | N | CB | H3 | 86.9° | 63.9° |
| H | N | CB | H4 | 34.7° | 176.0° |
| H | N | CA | HA2 | 105.9° | 176.1° |
| H | N | CA | HA3 | 135.3° | 63.9° |
| H3 | CB | CG | H5 | 152.5° | 180.0° |
| H3 | CB | CG | H6 | 89.3° | 60.0° |
| H4 | CB | CG | H5 | 30.9° | 60.0° |
| H4 | CB | CG | H6 | 149.1° | 180.0° |
| H5 | CG | CD | H7 | 176.5° | 180.0° |
| H5 | CG | CD | H8 | 63.5° | 60.0° |
| H6 | CG | CD | H7 | 58.3° | 60.0° |
| H6 | CG | CD | H8 | 178.2° | 180.0° |
| H7 | CD | CE | H9 | 175.5° | 180.0° |
| H7 | CD | CE | H10 | 55.2° | 60.0° |
| H8 | CD | CE | H9 | 64.5° | 60.0° |
| H8 | CD | CE | H10 | 175.2° | 180.0° |
| H9 | CE | NZ | H11 | 60.1° | 60.0° |
| H9 | CE | NZ | H12 | 59.8° | 176.0° |
| H10 | CE | NZ | H11 | 60.2° | 59.9° |
| H10 | CE | NZ | H12 | 179.9° | 64.0° |
| HA2 | CA | C | OXT | 169.4° | 59.9° |
| HA3 | CA | C | OXT | 50.6° | 60.0° |
