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NGD

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
O6AC6Adoub1.22Å1.25Å
C6AN1Asing1.40Å1.35Å
C6AC5Asing1.44Å1.39Å
C5AN7Asing1.36Å1.34ÅAromatic
C5AC4Adoub1.37Å1.39ÅAromatic
N7AC8Adoub1.32Å1.34ÅAromatic
C8AN9Asing1.37Å1.35ÅAromatic
C8AH8Asing1.08Å1.08Å
N9AC4Asing1.37Å1.34ÅAromatic
N9AC1'sing1.46Å1.49Å
C4AN3Asing1.35Å1.36Å
N3AC2Adoub1.31Å1.35Å
C2AN1Asing1.42Å1.36Å
C2AN2Asing1.37Å1.36Å
N2AH2A1sing0.99Å1.00Å
N2AH2A2sing0.99Å1.00Å
N1AHN1Asing1.02Å1.00Å
C1'O4'sing1.44Å1.44Å
C1'C2'sing1.52Å1.52Å
C1'H1'sing1.10Å1.10Å
O4'C4'sing1.45Å1.44Å
C2'O2'sing1.41Å1.43Å
C2'C3'sing1.52Å1.51Å
C2'H2'sing1.10Å1.10Å
O2'HO2sing0.97Å0.95Å
C3'C4'sing1.53Å1.53Å
C3'O3'sing1.43Å1.42Å
C3'H3'sing1.09Å1.10Å
O3'HO3sing0.97Å0.95Å
C4'C5'sing1.52Å1.56Å
C4'H4'sing1.09Å1.10Å
C5'O5'sing1.42Å1.43Å
C5'H51sing1.09Å1.10Å
C5'H52sing1.09Å1.10Å
O5'PAsing1.62Å1.64Å
PAO3sing1.62Å1.62Å
PAO2Adoub1.50Å1.51Å
PAO1Asing1.62Å1.49Å
O1AHO1Asing0.98Å0.95Å
O3PBsing1.62Å1.62Å
PBO5'Rsing1.62Å1.61Å
PBO1Bdoub1.50Å1.51Å
PBO2Bsing1.62Å1.51Å
O2BHO2Bsing0.98Å0.95Å
O5'RC5'Rsing1.42Å1.44Å
C5'RC4'Rsing1.52Å1.53Å
C5'RH5'1sing1.09Å1.10Å
C5'RH5'2sing1.09Å1.10Å
C4'RO4'Rsing1.45Å1.43Å
C4'RC3'Rsing1.53Å1.51Å
C4'RHC4'sing1.09Å1.10Å
C3'RO3'Rsing1.43Å1.45Å
C3'RC2'Rsing1.52Å1.51Å
C3'RHC3'sing1.09Å1.10Å
O3'RHO3'sing0.97Å0.95Å
C2'RO2'Rsing1.41Å1.42Å
C2'RC1'Rsing1.52Å1.53Å
C2'RHC2'sing1.10Å1.10Å
O2'RHO2'sing0.97Å0.95Å
O4'RC1'Rsing1.44Å1.44Å
C1'RN1sing1.48Å1.48Å
C1'RHC1'sing1.10Å1.10Å
N1C6doub1.35Å1.36ÅAromatic
N1C2sing1.35Å1.35ÅAromatic
C6C5sing1.39Å1.40ÅAromatic
C6H6sing1.08Å1.08Å
C5C4doub1.39Å1.40ÅAromatic
C5H5sing1.08Å1.08Å
C4C3sing1.39Å1.41ÅAromatic
C4H4sing1.09Å1.08Å
C2C3doub1.39Å1.40ÅAromatic
C2H2sing1.08Å1.08Å
C3C7sing1.45Å1.49Å
C7N7sing1.39Å1.27Å
C7O7doub1.24Å1.31Å
N7HN71sing1.01Å1.00Å
N7HN72sing1.01Å1.00Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
O6AC6AN1A120.0°125.5°
O6AC6AC5A121.2°123.8°
N1AC6AC5A118.9°110.8°
C6AN1AC2A121.5°125.3°
C6AN1AHN1A119.2°117.3°
C6AC5AN7A133.7°128.7°
C6AC5AC4A118.9°119.2°
N7AC5AC4A107.3°112.1°
C5AN7AC8A108.2°103.9°
C5AC4AN9A107.5°104.9°
C5AC4AN3A119.8°129.0°
N7AC8AN9A109.0°112.5°
N7AC8AH8A125.5°125.5°
N9AC8AH8A125.5°122.0°
C8AN9AC4A108.1°106.7°
C8AN9AC1'124.6°126.0°
C4AN9AC1'127.3°127.3°
N9AC4AN3A132.7°126.1°
N9AC1'O4'114.5°109.7°
N9AC1'C2'112.9°114.1°
N9AC1'H1'101.5°105.3°
C4AN3AC2A120.8°113.0°
N3AC2AN1A120.0°122.7°
N3AC2AN2A119.5°122.1°
N1AC2AN2A120.5°115.3°
C2AN1AHN1A119.2°117.4°
C2AN2AH2A1109.9°118.2°
C2AN2AH2A2125.1°118.3°
H2A1N2AH2A2125.0°123.5°
O4'C1'C2'102.6°106.2°
O4'C1'H1'112.0°108.9°
C1'O4'C4'106.7°108.8°
C2'C1'H1'113.6°112.6°
C1'C2'O2'111.4°111.9°
C1'C2'C3'100.5°101.5°
C1'C2'H2'115.3°111.1°
O4'C4'C3'105.2°106.4°
O4'C4'C5'117.7°108.4°
O4'C4'H4'108.6°107.6°
O2'C2'C3'113.0°113.0°
O2'C2'H2'103.3°108.9°
C2'O2'HO2109.5°107.3°
C3'C2'H2'113.7°110.3°
C2'C3'C4'105.3°102.3°
C2'C3'O3'107.7°109.5°
C2'C3'H3'112.4°113.8°
C4'C3'O3'107.1°108.8°
C4'C3'H3'113.1°114.5°
C3'C4'C5'114.0°112.9°
C3'C4'H4'112.8°112.0°
O3'C3'H3'110.8°107.8°
C3'O3'HO3109.5°106.4°
C5'C4'H4'98.6°109.3°
C4'C5'O5'117.9°109.0°
C4'C5'H51106.7°110.5°
C4'C5'H52104.8°110.6°
O5'C5'H51106.8°108.8°
O5'C5'H52104.8°108.8°
C5'O5'PA126.5°120.0°
H51C5'H52116.4°109.1°
O5'PAO3101.3°104.5°
O5'PAO2A104.9°114.7°
O5'PAO1A116.3°104.5°
O3PAO2A108.5°114.2°
O3PAO1A103.5°103.3°
PAO3PB124.5°131.1°
O2APAO1A120.6°114.4°
PAO1AHO1A109.5°118.9°
O3PBO5'R103.8°101.2°
O3PBO1B104.0°115.1°
O3PBO2B110.3°103.4°
O5'RPBO1B107.2°116.1°
O5'RPBO2B108.8°104.3°
PBO5'RC5'R119.3°118.5°
O1BPBO2B121.4°115.0°
PBO2BHO2B109.5°119.1°
O5'RC5'RC4'R112.8°109.0°
O5'RC5'RH5'1108.4°108.8°
O5'RC5'RH5'2107.6°108.8°
C4'RC5'RH5'1108.4°110.5°
C4'RC5'RH5'2107.6°110.5°
C5'RC4'RO4'R109.6°108.4°
C5'RC4'RC3'R109.8°113.0°
C5'RC4'RHC4'107.3°109.3°
H5'1C5'RH5'2112.1°109.1°
O4'RC4'RC3'R103.3°106.4°
O4'RC4'RHC4'113.5°107.6°
C4'RO4'RC1'R110.0°108.7°
C3'RC4'RHC4'113.2°112.0°
C4'RC3'RO3'R112.1°108.8°
C4'RC3'RC2'R103.7°102.3°
C4'RC3'RHC3'112.5°114.5°
O3'RC3'RC2'R112.2°109.5°
O3'RC3'RHC3'104.1°107.7°
C3'RO3'RHO3'109.5°106.5°
C2'RC3'RHC3'112.4°113.9°
C3'RC2'RO2'R107.1°113.1°
C3'RC2'RC1'R105.7°101.5°
C3'RC2'RHC2'114.2°110.5°
O2'RC2'RC1'R111.8°111.9°
O2'RC2'RHC2'108.3°108.9°
C2'RO2'RHO2'109.5°107.3°
C1'RC2'RHC2'109.7°110.8°
C2'RC1'RO4'R104.6°106.3°
C2'RC1'RN1114.2°110.6°
C2'RC1'RHC1'108.9°113.4°
O4'RC1'RN1107.1°112.2°
O4'RC1'RHC1'115.8°109.5°
N1C1'RHC1'106.5°105.0°
C1'RN1C6119.4°119.3°
C1'RN1C2120.2°119.3°
C6N1C2120.4°121.5°
N1C6C5123.0°120.6°
N1C6H6118.5°116.6°
N1C2C3119.9°120.5°
N1C2H2120.1°116.2°
C5C6H6118.5°122.8°
C6C5C4116.8°118.8°
C6C5H5121.6°120.6°
C4C5H5121.6°120.6°
C5C4C3119.9°119.9°
C5C4H4120.1°119.5°
C3C4H4120.0°120.6°
C4C3C2120.1°118.8°
C4C3C7119.4°120.7°
C3C2H2120.1°123.3°
C2C3C7120.5°120.5°
C3C7N7123.7°117.8°
C3C7O7117.3°121.5°
N7C7O7119.0°120.7°
C7N7HN71110.2°119.2°
C7N7HN72125.0°121.5°
HN71N7HN72124.9°119.3°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O6AC6AN1AC5A179.9°180.0°
O6AC6AC5AN7A0.1°0.0°
O6AC6AC5AC4A179.6°180.0°
O6AC6AN1AC2A179.5°180.0°
O6AC6AN1AHN1A0.5°0.1°
N1AC6AC5AN7A180.0°180.0°
N1AC6AC5AC4A0.2°0.0°
C6AN1AC2AN3A0.2°0.0°
C6AN1AC2AHN1A180.0°180.0°
C6AN1AC2AN2A179.5°180.0°
C6AC5AN7AC4A179.8°180.0°
C6AC5AN7AC8A180.0°180.0°
C6AC5AC4AN9A179.8°179.9°
C6AC5AC4AN3A0.1°0.0°
C5AC6AN1AC2A0.4°0.0°
C5AC6AN1AHN1A179.6°180.0°
C5AN7AC8AN9A0.0°0.0°
C5AN7AC8AH8A180.0°180.0°
N7AC5AC4AN9A0.4°0.1°
N7AC5AC4AN3A179.7°180.0°
C4AC5AN7AC8A0.3°0.1°
C5AC4AN9AC8A0.4°0.0°
C5AC4AN9AN3A179.8°179.9°
C5AC4AN9AC1'179.4°180.0°
C5AC4AN3AC2A0.2°0.0°
N7AC8AN9AH8A180.0°179.9°
N7AC8AN9AC4A0.3°0.0°
N7AC8AN9AC1'179.6°179.9°
C8AN9AC4AC1'179.9°179.9°
C8AN9AC4AN3A179.8°180.0°
C8AN9AC1'O4'110.1°33.0°
C8AN9AC1'C2'132.9°86.0°
C8AN9AC1'H1'10.8°150.0°
H8AC8AN9AC4A179.7°179.9°
H8AC8AN9AC1'0.4°0.0°
N9AC4AN3AC2A179.5°179.9°
C4AN9AC1'O4'69.7°147.1°
C4AN9AC1'C2'47.3°93.9°
C4AN9AC1'H1'169.3°30.1°
C1'N9AC4AN3A0.3°0.1°
N9AC1'O4'C2'122.8°123.7°
N9AC1'O4'H1'114.9°114.8°
N9AC1'C2'H1'115.0°120.0°
N9AC1'O4'C4'165.0°140.7°
N9AC1'C2'O2'73.4°84.0°
N9AC1'C2'C3'166.6°155.2°
N9AC1'C2'H2'43.9°37.9°
C4AN3AC2AN1A0.1°0.0°
C4AN3AC2AN2A179.8°180.0°
N3AC2AN1AN2A179.8°180.0°
N3AC2AN2AH2A10.2°6.8°
N3AC2AN2AH2A2179.7°173.2°
N3AC2AN1AHN1A179.7°180.0°
N1AC2AN2AH2A1180.0°173.3°
N1AC2AN2AH2A20.0°6.7°
C2AN2AH2A1H2A2180.0°180.0°
N2AC2AN1AHN1A0.5°0.0°
O4'C1'C2'H1'121.2°119.1°
O4'C1'C2'O2'162.8°155.1°
O4'C1'C2'C3'42.8°34.3°
O4'C1'C2'H2'79.9°83.0°
C1'O4'C4'C3'23.4°7.5°
C1'O4'C4'C5'151.7°114.3°
C1'O4'C4'H4'97.5°127.6°
C2'C1'O4'C4'42.2°16.9°
C1'C2'O2'C3'112.3°113.9°
C1'C2'O2'H2'124.3°123.2°
C1'C2'C3'H2'123.8°117.8°
C1'C2'O2'HO260.7°37.2°
C1'C2'C3'C4'28.4°37.4°
C1'C2'C3'O3'85.7°77.8°
C1'C2'C3'H3'151.9°161.5°
H1'C1'O4'C4'80.1°104.6°
H1'C1'C2'O2'41.6°35.9°
H1'C1'C2'C3'78.4°84.9°
H1'C1'C2'H2'158.9°157.8°
O4'C4'C3'C2'4.4°28.6°
O4'C4'C3'C5'130.4°118.8°
O4'C4'C3'H4'118.2°117.3°
O4'C4'C3'O3'110.1°87.1°
O4'C4'C3'H3'127.5°152.3°
O4'C4'C5'H4'116.4°117.0°
O4'C4'C5'O5'55.9°178.1°
O4'C4'C5'H51175.9°62.3°
O4'C4'C5'H5260.1°58.6°
O2'C2'C3'H2'117.4°122.2°
O2'C2'C3'C4'147.2°157.4°
O2'C2'C3'O3'33.1°42.2°
O2'C2'C3'H3'89.3°78.5°
C3'C2'O2'HO2173.0°151.0°
C2'C3'C4'O3'114.5°115.8°
C2'C3'C4'H3'123.1°123.6°
C2'C3'O3'H3'123.4°124.3°
C2'C3'O3'HO364.2°67.2°
C2'C3'C4'C5'126.0°90.2°
C2'C3'C4'H4'122.6°145.9°
H2'C2'O2'HO263.6°86.0°
H2'C2'C3'C4'95.4°80.4°
H2'C2'C3'O3'150.5°164.4°
H2'C2'C3'H3'28.1°43.7°
C4'C3'O3'H3'123.7°124.7°
C4'C3'O3'HO348.7°178.2°
C3'C4'C5'H4'119.7°125.4°
C3'C4'C5'O5'68.0°60.5°
C3'C4'C5'H5152.0°180.0°
C3'C4'C5'H52176.0°59.1°
O3'C3'C4'C5'119.5°154.1°
O3'C3'C4'H4'8.1°30.1°
H3'C3'O3'HO3172.4°57.1°
H3'C3'C4'C5'2.9°33.5°
H3'C3'C4'H4'114.2°90.5°
C4'C5'O5'H51120.0°120.6°
C4'C5'O5'H52116.0°120.6°
C4'C5'H51H52116.6°121.8°
C4'C5'O5'PA124.8°180.0°
H4'C4'C5'O5'172.3°64.9°
H4'C4'C5'H5167.7°54.6°
H4'C4'C5'H5256.3°175.5°
O5'C5'H51H52116.5°118.6°
C5'O5'PAO3130.9°54.2°
C5'O5'PAO2A116.4°180.0°
C5'O5'PAO1A19.6°54.0°
H51C5'O5'PA4.8°59.4°
H52C5'O5'PA119.2°59.4°
O5'PAO3O2A110.0°126.2°
O5'PAO3O1A120.8°109.0°
O5'PAO2AO1A133.5°120.7°
O5'PAO1AHO1A104.5°80.1°
O5'PAO3PB47.3°66.2°
O3PAO2AO1A118.9°118.7°
O3PAO1AHO1A145.4°170.8°
PAO3PBO5'R97.8°174.0°
PAO3PBO1B150.1°60.0°
PAO3PBO2B18.5°66.2°
O2APAO1AHO1A24.1°46.1°
O2APAO3PB62.7°60.0°
O1APAO3PB168.0°175.2°
O3PBO5'RO1B109.6°125.3°
O3PBO5'RO2B117.4°107.1°
O3PBO1BO2B124.8°120.0°
O3PBO2BHO2B168.9°77.7°
O3PBO5'RC5'R55.0°54.8°
O5'RPBO1BO2B125.7°122.2°
O5'RPBO2BHO2B55.7°176.9°
PBO5'RC5'RC4'R112.2°180.0°
PBO5'RC5'RH5'17.8°59.4°
PBO5'RC5'RH5'2129.2°59.4°
O1BPBO2BHO2B69.3°48.6°
O1BPBO5'RC5'R54.7°180.0°
O2BPBO5'RC5'R172.4°52.4°
O5'RC5'RC4'RH5'1120.0°119.6°
O5'RC5'RC4'RH5'2118.6°119.6°
O5'RC5'RH5'1H5'2118.7°118.6°
O5'RC5'RC4'RO4'R51.0°61.9°
O5'RC5'RC4'RC3'R163.8°179.5°
O5'RC5'RC4'RHC4'72.7°55.1°
C4'RC5'RH5'1H5'2118.6°121.7°
C5'RC4'RO4'RC3'R117.0°121.8°
C5'RC4'RO4'RHC4'120.0°118.0°
C5'RC4'RC3'RHC4'120.0°123.9°
C5'RC4'RC3'RO3'R155.2°154.4°
C5'RC4'RC3'RC2'R83.5°89.9°
C5'RC4'RC3'RHC3'38.2°33.8°
C5'RC4'RO4'RC1'R81.3°113.8°
H5'1C5'RC4'RO4'R171.0°57.7°
H5'1C5'RC4'RC3'R76.2°60.0°
H5'1C5'RC4'RHC4'47.3°174.6°
H5'2C5'RC4'RO4'R67.6°178.6°
H5'2C5'RC4'RC3'R45.2°60.9°
H5'2C5'RC4'RHC4'168.7°64.5°
O4'RC4'RC3'RHC4'123.2°117.3°
O4'RC4'RC3'RO3'R88.0°86.8°
O4'RC4'RC3'RC2'R33.3°28.9°
O4'RC4'RC3'RHC3'155.1°152.6°
C4'RO4'RC1'RC2'R22.7°16.4°
C4'RO4'RC1'RN198.8°137.4°
C4'RO4'RC1'RHC1'142.6°106.5°
C4'RC3'RO3'RC2'R116.3°111.1°
C4'RC3'RO3'RHC3'121.9°124.6°
C4'RC3'RC2'RHC3'121.8°124.1°
C4'RC3'RO3'RHO3'83.1°32.3°
C4'RC3'RC2'RO2'R139.5°157.4°
C4'RC3'RC2'RC1'R20.0°37.4°
C4'RC3'RC2'RHC2'100.6°80.2°
C3'RC4'RO4'RC1'R35.7°8.0°
HC4'C4'RC3'RO3'R35.2°30.4°
HC4'C4'RC3'RC2'R156.5°146.2°
HC4'C4'RC3'RHC3'81.8°90.1°
HC4'C4'RO4'RC1'R158.7°128.2°
O3'RC3'RC2'RHC3'116.9°120.6°
O3'RC3'RC2'RO2'R18.2°42.2°
O3'RC3'RC2'RC1'R101.2°77.9°
O3'RC3'RC2'RHC2'138.1°164.6°
C2'RC3'RO3'RHO3'160.6°143.4°
C3'RC2'RO2'RC1'R115.4°113.9°
C3'RC2'RO2'RHC2'123.6°123.3°
C3'RC2'RC1'RHC2'123.5°117.3°
C3'RC2'RO2'RHO2'80.8°5.8°
C3'RC2'RC1'RO4'R0.4°33.9°
C3'RC2'RC1'RN1116.4°156.0°
C3'RC2'RC1'RHC1'124.7°86.5°
HC3'C3'RO3'RHO3'38.8°92.3°
HC3'C3'RC2'RO2'R98.7°78.4°
HC3'C3'RC2'RC1'R141.9°161.5°
HC3'C3'RC2'RHC2'21.2°44.0°
O2'RC2'RC1'RHC2'120.2°121.8°
O2'RC2'RC1'RO4'R115.9°154.7°
O2'RC2'RC1'RN1127.3°83.2°
O2'RC2'RC1'RHC1'8.5°34.4°
C1'RC2'RO2'RHO2'163.8°108.0°
C2'RC1'RO4'RN1121.5°121.0°
C2'RC1'RO4'RHC1'119.9°122.8°
C2'RC1'RN1HC1'120.3°122.6°
C2'RC1'RN1C6153.4°92.6°
C2'RC1'RN1C227.4°87.5°
HC2'C2'RO2'RHO2'42.8°129.1°
HC2'C2'RC1'RO4'R123.9°83.5°
HC2'C2'RC1'RN17.1°38.6°
HC2'C2'RC1'RHC1'111.7°156.2°
O4'RC1'RN1HC1'124.4°118.8°
O4'RC1'RN1C638.1°148.9°
O4'RC1'RN1C2142.7°31.1°
C1'RN1C6C2179.2°179.9°
C1'RN1C6C5178.9°179.9°
C1'RN1C6H61.1°0.0°
C1'RN1C2C3179.9°180.0°
C1'RN1C2H20.1°0.1°
HC1'C1'RN1C686.3°30.0°
HC1'C1'RN1C292.8°149.9°
N1C6C5H6180.0°179.9°
N1C6C5C41.7°0.0°
N1C6C5H5178.3°180.0°
C6N1C2C31.0°0.0°
C6N1C2H2179.0°180.0°
C2N1C6C51.9°0.0°
C2N1C6H6178.1°179.9°
N1C2C3C40.1°0.1°
N1C2C3H2180.0°179.9°
N1C2C3C7179.2°179.9°
C6C5C4H5180.0°180.0°
C6C5C4C30.6°0.0°
C6C5C4H4179.4°180.0°
H6C6C5C4178.3°179.9°
H6C6C5H51.7°0.0°
C5C4C3H4180.0°179.9°
C5C4C3C20.3°0.1°
C5C4C3C7179.3°179.9°
H5C5C4C3179.4°180.0°
H5C5C4H40.6°0.1°
C4C3C2C7179.1°179.9°
C4C3C2H2179.9°180.0°
C4C3C7N7168.6°180.0°
C4C3C7O712.5°0.8°
H4C4C3C2179.8°180.0°
H4C4C3C70.7°0.0°
C2C3C7N712.3°0.0°
C2C3C7O7166.6°179.2°
H2C2C3C70.8°0.0°
C3C7N7O7178.9°179.2°
C3C7N7HN71180.0°0.1°
C3C7N7HN720.0°179.9°
C7N7HN71HN72180.0°180.0°
O7C7N7HN711.1°179.1°
O7C7N7HN72178.9°0.9°

222624

PDB entries from 2024-07-17

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