NEA
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
N | CB | sing | 1.47Å | 1.46Å | |
N | HN1 | sing | 1.01Å | 1.02Å | |
N | HN2 | sing | 1.01Å | 1.02Å | |
CB | CG | sing | 1.53Å | 1.52Å | |
CB | HB1 | sing | 1.09Å | 1.11Å | |
CB | HB2 | sing | 1.09Å | 1.12Å | |
CG | SD | sing | 1.81Å | 1.82Å | |
CG | HG1 | sing | 1.09Å | 1.12Å | |
CG | HG2 | sing | 1.09Å | 1.12Å | |
SD | C5' | sing | 1.81Å | 1.80Å | |
C5' | C4' | sing | 1.53Å | 1.53Å | |
C5' | H5'1 | sing | 1.09Å | 1.12Å | |
C5' | H5'2 | sing | 1.09Å | 1.11Å | |
C4' | O4' | sing | 1.44Å | 1.40Å | |
C4' | C3' | sing | 1.54Å | 1.52Å | |
C4' | H4' | sing | 1.09Å | 1.11Å | |
O4' | C1' | sing | 1.44Å | 1.41Å | |
C3' | O3' | sing | 1.43Å | 1.43Å | |
C3' | C2' | sing | 1.55Å | 1.49Å | |
C3' | H3' | sing | 1.09Å | 1.11Å | |
O3' | H3T | sing | 0.97Å | 0.95Å | |
C2' | O2' | sing | 1.43Å | 1.42Å | |
C2' | C1' | sing | 1.55Å | 1.48Å | |
C2' | H2' | sing | 1.09Å | 1.12Å | |
O2' | HO'2 | sing | 0.97Å | 0.95Å | |
C1' | N9 | sing | 1.46Å | 1.44Å | |
C1' | H1' | sing | 1.09Å | 1.11Å | |
N9 | C8 | sing | 1.36Å | 1.43Å | Aromatic |
N9 | C4 | sing | 1.37Å | 1.38Å | Aromatic |
C8 | N7 | doub | 1.30Å | 1.31Å | Aromatic |
C8 | H8 | sing | 1.08Å | 1.10Å | |
N7 | C5 | sing | 1.35Å | 1.39Å | Aromatic |
C5 | C6 | doub | 1.41Å | 1.42Å | Aromatic |
C5 | C4 | sing | 1.41Å | 1.40Å | Aromatic |
C6 | N6 | sing | 1.38Å | 1.34Å | |
C6 | N1 | sing | 1.33Å | 1.36Å | Aromatic |
N6 | H61 | sing | 0.97Å | 1.02Å | |
N6 | H62 | sing | 0.97Å | 1.02Å | |
N1 | C2 | doub | 1.32Å | 1.35Å | Aromatic |
C2 | N3 | sing | 1.32Å | 1.31Å | Aromatic |
C2 | H2 | sing | 1.08Å | 1.10Å | |
N3 | C4 | doub | 1.33Å | 1.43Å | Aromatic |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
CB | N | HN1 | 115.2° | 106.8° |
CB | N | HN2 | 110.1° | 106.7° |
N | CB | CG | 115.2° | 109.5° |
N | CB | HB1 | 110.1° | 109.5° |
N | CB | HB2 | 110.1° | 109.4° |
HN1 | N | HN2 | 110.2° | 106.7° |
CG | CB | HB1 | 110.1° | 109.5° |
CG | CB | HB2 | 110.1° | 109.5° |
CB | CG | SD | 107.7° | 109.5° |
CB | CG | HG1 | 112.9° | 109.5° |
CB | CG | HG2 | 112.9° | 109.5° |
HB1 | CB | HB2 | 100.1° | 109.5° |
SD | CG | HG1 | 112.8° | 109.5° |
SD | CG | HG2 | 112.9° | 109.5° |
CG | SD | C5' | 107.5° | 100.0° |
HG1 | CG | HG2 | 97.5° | 109.4° |
SD | C5' | C4' | 112.1° | 109.5° |
SD | C5' | H5'1 | 111.2° | 109.5° |
SD | C5' | H5'2 | 111.2° | 109.5° |
C4' | C5' | H5'1 | 111.3° | 109.4° |
C4' | C5' | H5'2 | 111.2° | 109.5° |
C5' | C4' | O4' | 107.6° | 109.9° |
C5' | C4' | C3' | 115.7° | 109.9° |
C5' | C4' | H4' | 105.2° | 109.9° |
H5'1 | C5' | H5'2 | 99.1° | 109.5° |
O4' | C4' | C3' | 104.7° | 107.4° |
O4' | C4' | H4' | 116.0° | 109.9° |
C4' | O4' | C1' | 109.9° | 107.0° |
C3' | C4' | H4' | 108.1° | 109.8° |
C4' | C3' | O3' | 109.5° | 110.8° |
C4' | C3' | C2' | 101.3° | 104.0° |
C4' | C3' | H3' | 115.1° | 110.5° |
O4' | C1' | C2' | 99.7° | 103.5° |
O4' | C1' | N9 | 103.6° | 110.7° |
O4' | C1' | H1' | 120.1° | 110.7° |
O3' | C3' | C2' | 111.0° | 110.5° |
O3' | C3' | H3' | 106.2° | 110.4° |
C3' | O3' | H3T | 109.5° | 106.8° |
C2' | C3' | H3' | 113.7° | 110.5° |
C3' | C2' | O2' | 110.6° | 110.9° |
C3' | C2' | C1' | 101.0° | 102.1° |
C3' | C2' | H2' | 114.4° | 111.0° |
O2' | C2' | C1' | 110.1° | 110.9° |
O2' | C2' | H2' | 105.9° | 110.7° |
C2' | O2' | HO'2 | 110.6° | 106.8° |
C1' | C2' | H2' | 114.8° | 110.9° |
C2' | C1' | N9 | 113.0° | 110.8° |
C2' | C1' | H1' | 111.7° | 110.6° |
N9 | C1' | H1' | 108.3° | 110.5° |
C1' | N9 | C8 | 129.3° | 126.3° |
C1' | N9 | C4 | 124.7° | 126.3° |
C8 | N9 | C4 | 106.1° | 107.4° |
N9 | C8 | N7 | 114.0° | 110.0° |
N9 | C8 | H8 | 126.7° | 125.0° |
N9 | C4 | C5 | 103.5° | 106.0° |
N9 | C4 | N3 | 129.7° | 135.0° |
N7 | C8 | H8 | 119.2° | 125.1° |
C8 | N7 | C5 | 101.9° | 109.5° |
N7 | C5 | C6 | 130.0° | 134.7° |
N7 | C5 | C4 | 114.5° | 107.1° |
C6 | C5 | C4 | 115.5° | 118.2° |
C5 | C6 | N6 | 122.7° | 120.8° |
C5 | C6 | N1 | 116.9° | 118.5° |
C5 | C4 | N3 | 126.8° | 119.0° |
N6 | C6 | N1 | 120.4° | 120.7° |
C6 | N6 | H61 | 122.7° | 120.0° |
C6 | N6 | H62 | 107.5° | 120.0° |
C6 | N1 | C2 | 122.8° | 121.2° |
H61 | N6 | H62 | 107.6° | 120.0° |
N1 | C2 | N3 | 126.6° | 122.5° |
N1 | C2 | H2 | 118.3° | 118.8° |
N3 | C2 | H2 | 115.0° | 118.8° |
C2 | N3 | C4 | 111.3° | 120.7° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
CB | N | HN1 | HN2 | 125.3° | 113.9° |
N | CB | CG | HB1 | 125.2° | 120.0° |
N | CB | CG | HB2 | 125.3° | 120.0° |
N | CB | HB1 | HB2 | 116.0° | 120.0° |
N | CB | CG | SD | 59.2° | 180.0° |
N | CB | CG | HG1 | 66.1° | 60.0° |
N | CB | CG | HG2 | 175.6° | 60.0° |
HN1 | N | CB | CG | 180.0° | 179.9° |
HN1 | N | CB | HB1 | 54.8° | 60.0° |
HN1 | N | CB | HB2 | 54.7° | 60.0° |
HN2 | N | CB | CG | 54.7° | 66.2° |
HN2 | N | CB | HB1 | 179.9° | 53.8° |
HN2 | N | CB | HB2 | 70.6° | 173.8° |
CG | CB | HB1 | HB2 | 115.9° | 120.0° |
CB | CG | SD | HG1 | 125.3° | 120.0° |
CB | CG | SD | HG2 | 125.3° | 120.0° |
CB | CG | HG1 | HG2 | 118.8° | 120.0° |
CB | CG | SD | C5' | 71.0° | 180.0° |
HB1 | CB | CG | SD | 175.6° | 60.0° |
HB1 | CB | CG | HG1 | 59.1° | 180.0° |
HB1 | CB | CG | HG2 | 50.3° | 60.0° |
HB2 | CB | CG | SD | 66.1° | 60.0° |
HB2 | CB | CG | HG1 | 168.6° | 60.0° |
HB2 | CB | CG | HG2 | 59.2° | 180.0° |
SD | CG | HG1 | HG2 | 118.7° | 120.0° |
CG | SD | C5' | C4' | 114.3° | 180.0° |
CG | SD | C5' | H5'1 | 120.5° | 60.0° |
CG | SD | C5' | H5'2 | 11.0° | 60.0° |
HG1 | CG | SD | C5' | 163.6° | 60.0° |
HG2 | CG | SD | C5' | 54.2° | 60.0° |
SD | C5' | C4' | H5'1 | 125.2° | 120.0° |
SD | C5' | C4' | H5'2 | 125.3° | 120.0° |
SD | C5' | H5'1 | H5'2 | 117.1° | 120.0° |
SD | C5' | C4' | O4' | 60.3° | 61.7° |
SD | C5' | C4' | C3' | 177.0° | 179.7° |
SD | C5' | C4' | H4' | 63.9° | 59.3° |
C4' | C5' | H5'1 | H5'2 | 117.1° | 119.9° |
C5' | C4' | O4' | C3' | 123.6° | 119.5° |
C5' | C4' | O4' | H4' | 117.4° | 121.0° |
C5' | C4' | C3' | H4' | 117.5° | 121.0° |
C5' | C4' | O4' | C1' | 136.1° | 146.0° |
C5' | C4' | C3' | O3' | 142.5° | 119.8° |
C5' | C4' | C3' | C2' | 100.1° | 121.4° |
C5' | C4' | C3' | H3' | 23.0° | 2.8° |
H5'1 | C5' | C4' | O4' | 64.9° | 58.3° |
H5'1 | C5' | C4' | C3' | 51.7° | 59.7° |
H5'1 | C5' | C4' | H4' | 170.9° | 179.3° |
H5'2 | C5' | C4' | O4' | 174.4° | 178.2° |
H5'2 | C5' | C4' | C3' | 57.7° | 60.3° |
H5'2 | C5' | C4' | H4' | 61.4° | 60.7° |
O4' | C4' | C3' | H4' | 124.2° | 119.5° |
O4' | C4' | C3' | O3' | 99.2° | 120.7° |
O4' | C4' | C3' | C2' | 18.1° | 1.9° |
O4' | C4' | C3' | H3' | 141.3° | 116.7° |
C4' | O4' | C1' | C2' | 37.8° | 40.1° |
C4' | O4' | C1' | N9 | 154.6° | 158.8° |
C4' | O4' | C1' | H1' | 84.5° | 78.4° |
C3' | C4' | O4' | C1' | 12.5° | 26.4° |
C4' | C3' | O3' | C2' | 111.1° | 114.8° |
C4' | C3' | O3' | H3' | 124.9° | 122.7° |
C4' | C3' | C2' | H3' | 124.1° | 118.6° |
C4' | C3' | O3' | H3T | 180.0° | 176.2° |
C4' | C3' | C2' | O2' | 156.7° | 139.2° |
C4' | C3' | C2' | C1' | 40.2° | 21.0° |
C4' | C3' | C2' | H2' | 83.7° | 97.3° |
H4' | C4' | O4' | C1' | 106.5° | 93.0° |
H4' | C4' | C3' | O3' | 25.0° | 1.2° |
H4' | C4' | C3' | C2' | 142.3° | 117.6° |
H4' | C4' | C3' | H3' | 94.5° | 123.8° |
O4' | C1' | C2' | C3' | 47.7° | 37.1° |
O4' | C1' | C2' | O2' | 164.5° | 155.3° |
O4' | C1' | C2' | N9 | 109.4° | 118.6° |
O4' | C1' | C2' | H1' | 128.1° | 118.5° |
O4' | C1' | C2' | H2' | 76.0° | 81.2° |
O4' | C1' | N9 | H1' | 128.6° | 122.9° |
O4' | C1' | N9 | C8 | 69.3° | 28.6° |
O4' | C1' | N9 | C4 | 110.0° | 151.8° |
O3' | C3' | C2' | H3' | 119.7° | 122.5° |
O3' | C3' | C2' | O2' | 40.5° | 20.3° |
O3' | C3' | C2' | C1' | 76.0° | 98.0° |
O3' | C3' | C2' | H2' | 160.0° | 143.8° |
C2' | C3' | O3' | H3T | 68.9° | 61.5° |
C3' | C2' | O2' | C1' | 110.7° | 112.7° |
C3' | C2' | O2' | H2' | 124.5° | 123.7° |
C3' | C2' | C1' | H2' | 123.7° | 118.3° |
C3' | C2' | O2' | HO'2 | 180.0° | 67.3° |
C3' | C2' | C1' | N9 | 157.1° | 155.7° |
C3' | C2' | C1' | H1' | 80.4° | 81.4° |
H3' | C3' | O3' | H3T | 55.2° | 61.1° |
H3' | C3' | C2' | O2' | 79.2° | 102.2° |
H3' | C3' | C2' | C1' | 164.3° | 139.6° |
H3' | C3' | C2' | H2' | 40.4° | 21.3° |
O2' | C2' | C1' | H2' | 119.5° | 123.5° |
O2' | C2' | C1' | N9 | 86.0° | 86.1° |
O2' | C2' | C1' | H1' | 36.5° | 36.8° |
C1' | C2' | O2' | HO'2 | 69.3° | 180.0° |
C2' | C1' | N9 | H1' | 124.4° | 122.9° |
C2' | C1' | N9 | C8 | 37.7° | 85.6° |
C2' | C1' | N9 | C4 | 143.0° | 94.0° |
H2' | C2' | O2' | HO'2 | 55.5° | 56.4° |
H2' | C2' | C1' | N9 | 33.4° | 37.4° |
H2' | C2' | C1' | H1' | 155.9° | 160.3° |
C1' | N9 | C8 | C4 | 179.4° | 179.7° |
C1' | N9 | C8 | N7 | 179.5° | 180.0° |
C1' | N9 | C8 | H8 | 0.6° | 0.1° |
C1' | N9 | C4 | C5 | 179.5° | 179.9° |
C1' | N9 | C4 | N3 | 0.5° | 0.9° |
H1' | C1' | N9 | C8 | 162.1° | 151.5° |
H1' | C1' | N9 | C4 | 18.6° | 28.9° |
N9 | C8 | N7 | H8 | 180.0° | 180.0° |
N9 | C8 | N7 | C5 | 0.0° | 0.0° |
C8 | N9 | C4 | C5 | 0.0° | 0.5° |
C8 | N9 | C4 | N3 | 180.0° | 179.4° |
C4 | N9 | C8 | N7 | 0.0° | 0.3° |
C4 | N9 | C8 | H8 | 180.0° | 179.7° |
N9 | C4 | C5 | N7 | 0.0° | 0.5° |
N9 | C4 | C5 | C6 | 179.9° | 179.8° |
N9 | C4 | C5 | N3 | 180.0° | 179.2° |
N9 | C4 | N3 | C2 | 179.9° | 179.6° |
C8 | N7 | C5 | C6 | 179.9° | 179.9° |
C8 | N7 | C5 | C4 | 0.0° | 0.3° |
H8 | C8 | N7 | C5 | 180.0° | 179.9° |
N7 | C5 | C6 | C4 | 179.9° | 179.6° |
N7 | C5 | C6 | N6 | 0.1° | 0.0° |
N7 | C5 | C6 | N1 | 179.9° | 179.9° |
N7 | C5 | C4 | N3 | 180.0° | 179.7° |
C5 | C6 | N6 | N1 | 179.7° | 179.9° |
C5 | C6 | N6 | H61 | 180.0° | 179.9° |
C5 | C6 | N6 | H62 | 54.7° | 0.0° |
C5 | C6 | N1 | C2 | 0.1° | 0.0° |
C6 | C5 | C4 | N3 | 0.1° | 0.6° |
C4 | C5 | C6 | N6 | 179.8° | 179.6° |
C4 | C5 | C6 | N1 | 0.0° | 0.3° |
C5 | C4 | N3 | C2 | 0.2° | 0.7° |
C6 | N6 | H61 | H62 | 125.3° | 179.9° |
N6 | C6 | N1 | C2 | 179.9° | 180.0° |
N1 | C6 | N6 | H61 | 0.3° | 0.1° |
N1 | C6 | N6 | H62 | 125.6° | 180.0° |
C6 | N1 | C2 | N3 | 0.1° | 0.0° |
C6 | N1 | C2 | H2 | 179.9° | 179.9° |
N1 | C2 | N3 | H2 | 180.0° | 179.9° |
N1 | C2 | N3 | C4 | 0.1° | 0.4° |
H2 | C2 | N3 | C4 | 179.9° | 179.7° |