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SummaryGeometryRelated PDB entries

NDN

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
POP1doub1.48Å1.51Å
POP2sing1.61Å1.50Å
OP3HOP3sing0.97Å0.95Å
OP2HOP2sing0.97Å0.95Å
OP3Psing1.61Å1.50Å
OR5Psing1.61Å1.59Å
CR5OR5sing1.43Å1.39Å
CR5CR4sing1.53Å1.51Å
CR5HR5sing1.09Å1.10Å
CR5HR5Asing1.09Å1.10Å
CR4CR3sing1.54Å1.52Å
CR4HR4sing1.09Å1.10Å
CR3CR2sing1.55Å1.54Å
CR3OR3sing1.43Å1.40Å
CR3HR3sing1.09Å1.10Å
OR3HOR3sing0.97Å0.95Å
CR2HR2sing1.09Å1.10Å
CR2HR2Asing1.09Å1.10Å
CR1CR2sing1.55Å1.57Å
CR1HR1sing1.09Å1.10Å
OR1CR4sing1.44Å1.42Å
OR1CR1sing1.44Å1.44Å
N1CR1sing1.47Å1.53Å
N1C2sing1.34Å1.39Å
C2O2doub1.22Å1.16Å
N3C2sing1.35Å1.40Å
N3HN3sing0.97Å1.00Å
C4N3sing1.35Å1.39Å
O4C4doub1.22Å1.22Å
C5C4sing1.42Å1.55Å
C5C6doub1.35Å1.54Å
C6N1sing1.37Å1.53Å
C6H6sing1.08Å1.08Å
N5C5sing1.48Å1.31Å
O51N5doub1.22Å1.25Å
O52N5sing1.22Å1.24Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
OP1POP2111.8°109.5°
OP1POP3115.6°109.5°
OP1POR5102.7°109.4°
POP2HOP2109.5°114.0°
OP2POP3117.7°109.5°
OP2POR5103.8°109.5°
HOP3OP3P109.5°114.0°
OP3POR5102.7°109.5°
POR5CR5136.7°123.0°
OR5CR5CR4109.3°109.4°
OR5CR5HR5109.5°109.5°
OR5CR5HR5A109.5°109.5°
CR4CR5HR5109.5°109.5°
CR4CR5HR5A109.6°109.5°
CR5CR4CR3122.9°110.3°
CR5CR4HR497.5°110.3°
CR5CR4OR1109.8°110.4°
HR5CR5HR5A109.4°109.5°
CR3CR4HR4105.4°110.4°
CR4CR3CR2103.3°104.1°
CR4CR3OR3113.4°110.5°
CR4CR3HR3111.5°110.6°
CR3CR4OR1102.7°104.8°
HR4CR4OR1119.7°110.5°
CR2CR3OR3110.8°110.5°
CR2CR3HR3114.1°110.5°
CR3CR2HR2113.2°110.5°
CR3CR2HR2A115.3°110.5°
CR3CR2CR198.9°104.0°
OR3CR3HR3104.1°110.6°
CR3OR3HOR3109.5°114.0°
HR2CR2HR2A101.6°110.5°
HR2CR2CR1113.2°110.5°
HR2ACR2CR1115.3°110.6°
CR2CR1HR1116.1°110.4°
CR2CR1OR1106.0°104.8°
CR2CR1N1111.9°110.4°
HR1CR1OR1104.0°110.3°
HR1CR1N196.9°110.4°
CR4OR1CR1111.5°105.3°
OR1CR1N1122.1°110.4°
CR1N1C2127.3°119.7°
CR1N1C6105.1°119.6°
N1C2O2120.7°119.6°
N1C2N3117.9°120.9°
C2N1C6119.5°120.6°
O2C2N3121.4°119.5°
C2N3HN3116.7°119.9°
C2N3C4126.6°120.3°
HN3N3C4116.7°119.8°
N3C4O4124.1°120.3°
N3C4C5116.1°119.3°
O4C4C5119.8°120.4°
C4C5C6115.5°119.2°
C4C5N5127.0°120.4°
C5C6N1117.2°119.6°
C5C6H6121.4°120.2°
C6C5N5116.0°120.4°
N1C6H6121.4°120.2°
C5N5O51121.8°120.0°
C5N5O52125.3°120.0°
O51N5O52112.9°120.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
OP1POP2OP3137.3°120.0°
OP1POP2OR5110.0°120.0°
OP1POP3HOP3137.0°180.0°
OP1POP2HOP227.8°60.0°
OP1POP3OR5111.0°120.0°
OP1POR5CR5178.0°55.0°
OP2POP3HOP31.3°60.0°
OP2POP3OR5113.2°120.0°
OP2POR5CR561.4°175.0°
HOP3OP3POR5111.9°60.0°
HOP2OP2POP3165.1°60.0°
HOP2OP2POR582.3°180.0°
OP3POR5CR561.6°65.0°
POR5CR5CR4131.3°180.0°
POR5CR5HR5108.7°60.0°
POR5CR5HR5A11.2°60.0°
OR5CR5CR4HR5120.0°120.0°
OR5CR5CR4HR5A120.1°120.0°
OR5CR5HR5HR5A120.1°120.0°
OR5CR5CR4CR364.5°175.0°
OR5CR5CR4HR449.4°52.8°
OR5CR5CR4OR1174.7°69.6°
CR4CR5HR5HR5A120.1°120.0°
CR5CR4CR3HR4109.9°122.2°
CR5CR4CR3OR1124.1°118.8°
CR5CR4HR4OR1118.0°122.3°
CR5CR4CR3CR283.9°142.8°
CR5CR4CR3OR3156.1°98.5°
CR5CR4CR3HR339.0°24.2°
CR5CR4OR1CR1108.3°159.3°
HR5CR5CR4CR3175.5°65.0°
HR5CR5CR4HR470.6°172.8°
HR5CR5CR4OR154.8°50.4°
HR5ACR5CR4CR355.6°55.0°
HR5ACR5CR4HR4169.4°67.2°
HR5ACR5CR4OR165.2°170.4°
CR3CR4HR4OR1114.8°115.5°
CR4CR3CR2OR3121.7°118.6°
CR4CR3CR2HR3121.2°118.7°
CR4CR3OR3HR3121.4°122.8°
CR4CR3OR3HOR313.6°179.9°
CR4CR3CR2HR280.6°118.6°
CR4CR3CR2HR2A163.0°118.7°
CR4CR3CR2CR139.4°0.0°
CR3CR4OR1CR124.0°40.5°
HR4CR4CR3CR2166.2°95.0°
HR4CR4CR3OR346.2°23.7°
HR4CR4CR3HR370.9°146.4°
HR4CR4OR1CR1140.2°78.4°
CR2CR3OR3HR3123.0°122.6°
CR2CR3OR3HOR3129.2°65.3°
CR3CR2HR2HR2A124.2°122.6°
CR3CR2HR2CR1111.5°114.6°
CR3CR2HR2ACR1114.4°114.6°
CR3CR2CR1HR189.4°94.8°
CR2CR3CR4OR140.1°24.0°
CR3CR2CR1OR125.4°24.0°
CR3CR2CR1N1160.7°142.9°
OR3CR3CR2HR2157.7°122.8°
OR3CR3CR2HR2A41.2°0.1°
OR3CR3CR2CR182.3°118.6°
OR3CR3CR4OR179.8°142.6°
HR3CR3OR3HOR3107.7°57.3°
HR3CR3CR2HR240.6°0.1°
HR3CR3CR2HR2A75.8°122.6°
HR3CR3CR2CR1160.6°118.7°
HR3CR3CR4OR1163.0°94.6°
HR2CR2HR2ACR1122.8°122.7°
HR2CR2CR1HR1150.6°146.5°
HR2CR2CR1OR194.6°94.6°
HR2CR2CR1N140.7°24.3°
HR2ACR2CR1HR134.2°23.8°
HR2ACR2CR1OR1149.0°142.6°
HR2ACR2CR1N175.8°98.5°
CR2CR1HR1OR1116.0°115.4°
CR2CR1HR1N1118.5°122.3°
CR2CR1OR1CR41.4°40.5°
CR2CR1OR1N1129.6°118.9°
CR2CR1N1C281.2°65.0°
CR2CR1N1C6131.1°114.7°
HR1CR1OR1CR4121.4°78.3°
HR1CR1OR1N1107.6°122.3°
HR1CR1N1C240.5°172.7°
HR1CR1N1C6107.2°7.6°
CR4OR1CR1N1131.0°159.4°
OR1CR1N1C2151.8°50.5°
OR1CR1N1C64.1°129.9°
CR1N1C2C6143.6°179.7°
CR1N1C2O211.8°0.0°
CR1N1C2N3168.4°179.9°
CR1N1C6C5172.1°179.8°
CR1N1C6H67.9°0.3°
N1C2O2N3179.8°179.9°
N1C2N3HN3153.2°180.0°
N1C2N3C426.8°0.1°
C2N1C6C521.4°0.6°
C2N1C6H6158.6°180.0°
O2C2N3HN326.6°0.1°
O2C2N3C4153.4°180.0°
O2C2N1C6155.4°179.7°
C2N3HN3C4180.0°179.9°
C2N3C4O4157.3°180.0°
C2N3C4C522.3°0.0°
N3C2N1C624.8°0.2°
HN3N3C4O422.7°0.0°
HN3N3C4C5157.7°180.0°
N3C4O4C5179.6°180.0°
N3C4C5C616.5°0.3°
N3C4C5N5178.4°180.0°
O4C4C5C6163.1°179.7°
O4C4C5N51.9°0.0°
C4C5C6N5166.7°179.7°
C4C5C6N116.7°0.6°
C4C5C6H6163.3°180.0°
C4C5N5O5117.4°180.0°
C4C5N5O52161.7°0.1°
C5C6N1H6180.0°179.4°
C6C5N5O51177.6°0.3°
C6C5N5O523.3°179.7°
N1C6C5N5176.5°179.7°
H6C6C5N53.5°0.3°
C5N5O51O52179.2°179.9°

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PDB entries from 2024-07-17

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