NDJ
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
O2 | C2 | sing | 1.43Å | 1.44Å | |
S7 | C7 | doub | 1.71Å | 1.63Å | |
C1 | C2 | sing | 1.53Å | 1.56Å | |
C1 | N5 | sing | 1.47Å | 1.46Å | |
C2 | C3 | sing | 1.53Å | 1.55Å | |
C7 | N5 | sing | 1.35Å | 1.40Å | |
C7 | N8 | sing | 1.35Å | 1.37Å | |
N5 | C5 | sing | 1.47Å | 1.51Å | |
C3 | O3 | sing | 1.43Å | 1.43Å | |
C3 | C4 | sing | 1.53Å | 1.51Å | |
N8 | C9 | sing | 1.46Å | 1.47Å | |
C9 | C10 | sing | 1.53Å | 1.53Å | |
C5 | C4 | sing | 1.53Å | 1.55Å | |
C5 | C6 | sing | 1.53Å | 1.53Å | |
C4 | O4 | sing | 1.43Å | 1.46Å | |
C10 | C11 | sing | 1.53Å | 1.53Å | |
C11 | C12 | sing | 1.53Å | 1.52Å | |
C6 | O6 | sing | 1.43Å | 1.47Å | |
O2 | H1 | sing | 0.97Å | 0.95Å | |
C2 | H2 | sing | 1.09Å | 1.10Å | |
C3 | H3 | sing | 1.09Å | 1.10Å | |
O3 | H4 | sing | 0.97Å | 0.95Å | |
C1 | H5 | sing | 1.09Å | 1.10Å | |
C1 | H6 | sing | 1.09Å | 1.10Å | |
C5 | H7 | sing | 1.09Å | 1.10Å | |
C6 | H8 | sing | 1.09Å | 1.10Å | |
C6 | H9 | sing | 1.09Å | 1.10Å | |
O6 | H10 | sing | 0.97Å | 0.95Å | |
C4 | H11 | sing | 1.09Å | 1.10Å | |
O4 | H12 | sing | 0.97Å | 0.95Å | |
N8 | H13 | sing | 0.97Å | 1.00Å | |
C9 | H14 | sing | 1.09Å | 1.10Å | |
C9 | H15 | sing | 1.09Å | 1.10Å | |
C10 | H16 | sing | 1.09Å | 1.10Å | |
C10 | H17 | sing | 1.09Å | 1.10Å | |
C11 | H18 | sing | 1.09Å | 1.10Å | |
C11 | H19 | sing | 1.09Å | 1.10Å | |
C12 | H20 | sing | 1.09Å | 1.10Å | |
C12 | H21 | sing | 1.09Å | 1.10Å | |
C12 | H22 | sing | 1.09Å | 1.10Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
O2 | C2 | C1 | 108.0° | 109.5° |
O2 | C2 | C3 | 109.5° | 109.5° |
C2 | O2 | H1 | 109.5° | 113.9° |
O2 | C2 | H2 | 109.7° | 109.5° |
S7 | C7 | N5 | 123.8° | 120.0° |
S7 | C7 | N8 | 116.8° | 120.0° |
C2 | C1 | N5 | 106.0° | 108.8° |
C1 | C2 | C3 | 113.2° | 109.3° |
C1 | C2 | H2 | 108.2° | 109.6° |
C2 | C1 | H5 | 110.3° | 109.5° |
C2 | C1 | H6 | 110.3° | 109.6° |
C1 | N5 | C7 | 121.3° | 120.6° |
C1 | N5 | C5 | 107.7° | 118.7° |
N5 | C1 | H5 | 110.3° | 109.6° |
N5 | C1 | H6 | 110.3° | 109.6° |
C2 | C3 | O3 | 111.4° | 109.4° |
C2 | C3 | C4 | 110.0° | 109.5° |
C3 | C2 | H2 | 108.2° | 109.5° |
C2 | C3 | H3 | 107.7° | 109.5° |
N5 | C7 | N8 | 119.4° | 120.0° |
C7 | N5 | C5 | 130.5° | 120.6° |
C7 | N8 | C9 | 125.8° | 120.0° |
C7 | N8 | H13 | 117.1° | 120.0° |
N5 | C5 | C4 | 104.0° | 108.7° |
N5 | C5 | C6 | 115.5° | 109.6° |
N5 | C5 | H7 | 110.6° | 109.6° |
O3 | C3 | C4 | 110.2° | 109.5° |
O3 | C3 | H3 | 109.2° | 109.4° |
C3 | O3 | H4 | 109.5° | 114.0° |
C3 | C4 | C5 | 111.9° | 109.3° |
C3 | C4 | O4 | 110.0° | 109.5° |
C4 | C3 | H3 | 108.2° | 109.5° |
C3 | C4 | H11 | 109.0° | 109.5° |
N8 | C9 | C10 | 111.8° | 109.5° |
C9 | N8 | H13 | 117.1° | 120.0° |
N8 | C9 | H14 | 108.9° | 109.5° |
N8 | C9 | H15 | 108.9° | 109.5° |
C9 | C10 | C11 | 113.3° | 109.5° |
C10 | C9 | H14 | 108.9° | 109.5° |
C10 | C9 | H15 | 108.9° | 109.5° |
C9 | C10 | H16 | 108.5° | 109.5° |
C9 | C10 | H17 | 108.5° | 109.5° |
C4 | C5 | C6 | 105.8° | 109.6° |
C5 | C4 | O4 | 107.7° | 109.5° |
C4 | C5 | H7 | 110.1° | 109.6° |
C5 | C4 | H11 | 108.5° | 109.5° |
C5 | C6 | O6 | 115.1° | 109.5° |
C6 | C5 | H7 | 110.4° | 109.7° |
C5 | C6 | H8 | 108.0° | 109.5° |
C5 | C6 | H9 | 108.1° | 109.5° |
O4 | C4 | H11 | 109.7° | 109.5° |
C4 | O4 | H12 | 109.5° | 114.0° |
C10 | C11 | C12 | 112.4° | 109.5° |
C11 | C10 | H16 | 108.5° | 109.4° |
C11 | C10 | H17 | 108.5° | 109.4° |
C10 | C11 | H18 | 108.7° | 109.4° |
C10 | C11 | H19 | 108.8° | 109.4° |
C12 | C11 | H18 | 108.7° | 109.5° |
C12 | C11 | H19 | 108.7° | 109.5° |
C11 | C12 | H20 | 109.5° | 109.5° |
C11 | C12 | H21 | 109.5° | 109.4° |
C11 | C12 | H22 | 109.5° | 109.5° |
O6 | C6 | H8 | 108.0° | 109.4° |
O6 | C6 | H9 | 108.0° | 109.5° |
C6 | O6 | H10 | 109.5° | 114.1° |
H5 | C1 | H6 | 109.5° | 109.7° |
H8 | C6 | H9 | 109.5° | 109.4° |
H14 | C9 | H15 | 109.5° | 109.4° |
H16 | C10 | H17 | 109.4° | 109.5° |
H18 | C11 | H19 | 109.5° | 109.5° |
H20 | C12 | H21 | 109.4° | 109.5° |
H20 | C12 | H22 | 109.5° | 109.5° |
H21 | C12 | H22 | 109.5° | 109.5° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
O2 | C2 | C1 | C3 | 121.4° | 119.9° |
O2 | C2 | C1 | H2 | 118.7° | 120.1° |
O2 | C2 | C1 | N5 | 177.7° | 174.6° |
O2 | C2 | C3 | H2 | 119.6° | 120.1° |
O2 | C2 | C3 | O3 | 70.3° | 58.7° |
O2 | C2 | C3 | C4 | 167.2° | 178.7° |
O2 | C2 | C3 | H3 | 49.5° | 61.3° |
O2 | C2 | C1 | H5 | 62.8° | 65.6° |
O2 | C2 | C1 | H6 | 58.3° | 54.7° |
S7 | C7 | N5 | C1 | 39.7° | 171.5° |
S7 | C7 | N5 | N8 | 177.4° | 180.0° |
S7 | C7 | N5 | C5 | 149.6° | 8.5° |
S7 | C7 | N8 | C9 | 5.7° | 5.8° |
S7 | C7 | N8 | H13 | 174.3° | 174.2° |
C2 | C1 | N5 | H5 | 119.5° | 119.8° |
C2 | C1 | N5 | H6 | 119.5° | 119.8° |
C1 | C2 | C3 | H2 | 119.9° | 120.0° |
C2 | C1 | N5 | C7 | 102.2° | 126.3° |
C2 | C1 | N5 | C5 | 70.4° | 53.6° |
C1 | C2 | C3 | O3 | 169.2° | 178.6° |
C1 | C2 | C3 | C4 | 46.6° | 61.4° |
C1 | C2 | O2 | H1 | 180.0° | 60.2° |
C1 | C2 | C3 | H3 | 71.1° | 58.7° |
C2 | C1 | H5 | H6 | 121.6° | 120.3° |
N5 | C1 | C2 | C3 | 56.3° | 54.7° |
C1 | N5 | C7 | C5 | 170.7° | 180.0° |
C1 | N5 | C7 | N8 | 137.7° | 8.5° |
C1 | N5 | C5 | C4 | 73.9° | 53.6° |
C1 | N5 | C5 | C6 | 170.6° | 173.4° |
N5 | C1 | C2 | H2 | 63.6° | 65.3° |
N5 | C1 | H5 | H6 | 121.6° | 120.4° |
C1 | N5 | C5 | H7 | 44.3° | 66.1° |
C2 | C3 | O3 | C4 | 122.4° | 120.0° |
C2 | C3 | O3 | H3 | 118.9° | 120.0° |
C2 | C3 | C4 | H3 | 117.4° | 120.1° |
C2 | C3 | C4 | C5 | 50.5° | 61.4° |
C2 | C3 | C4 | O4 | 69.2° | 58.6° |
C3 | C2 | O2 | H1 | 56.4° | 180.0° |
C2 | C3 | O3 | H4 | 180.0° | 60.0° |
C3 | C2 | C1 | H5 | 175.8° | 174.5° |
C3 | C2 | C1 | H6 | 63.2° | 65.2° |
C2 | C3 | C4 | H11 | 170.5° | 178.7° |
N5 | C7 | N8 | C9 | 176.7° | 174.2° |
C7 | N5 | C5 | C4 | 97.8° | 126.4° |
C7 | N5 | C5 | C6 | 17.7° | 6.6° |
C7 | N5 | C1 | H5 | 17.3° | 6.6° |
C7 | N5 | C1 | H6 | 138.3° | 113.8° |
C7 | N5 | C5 | H7 | 144.0° | 113.9° |
N5 | C7 | N8 | H13 | 3.3° | 5.8° |
N8 | C7 | N5 | C5 | 33.0° | 171.5° |
C7 | N8 | C9 | H13 | 180.0° | 180.0° |
C7 | N8 | C9 | C10 | 109.6° | 180.0° |
C7 | N8 | C9 | H14 | 130.0° | 60.0° |
C7 | N8 | C9 | H15 | 10.7° | 60.0° |
N5 | C5 | C4 | C3 | 63.0° | 54.7° |
N5 | C5 | C4 | C6 | 122.1° | 119.8° |
N5 | C5 | C4 | H7 | 118.6° | 119.8° |
N5 | C5 | C6 | H7 | 126.4° | 120.4° |
N5 | C5 | C4 | O4 | 58.0° | 65.3° |
N5 | C5 | C6 | O6 | 175.3° | 80.7° |
C5 | N5 | C1 | H5 | 170.1° | 173.4° |
C5 | N5 | C1 | H6 | 49.1° | 66.2° |
N5 | C5 | C6 | H8 | 54.4° | 159.4° |
N5 | C5 | C6 | H9 | 63.9° | 39.4° |
N5 | C5 | C4 | H11 | 176.7° | 174.6° |
O3 | C3 | C4 | H3 | 119.4° | 120.0° |
O3 | C3 | C4 | C5 | 173.8° | 178.6° |
O3 | C3 | C4 | O4 | 54.1° | 61.4° |
O3 | C3 | C2 | H2 | 49.3° | 61.4° |
O3 | C3 | C4 | H11 | 66.2° | 58.7° |
C3 | C4 | C5 | O4 | 121.1° | 120.0° |
C3 | C4 | C5 | H11 | 120.3° | 119.9° |
C3 | C4 | C5 | C6 | 174.8° | 174.4° |
C3 | C4 | O4 | H11 | 119.9° | 120.1° |
C4 | C3 | C2 | H2 | 73.2° | 58.6° |
C4 | C3 | O3 | H4 | 57.6° | 179.9° |
C3 | C4 | C5 | H7 | 55.5° | 65.1° |
C3 | C4 | O4 | H12 | 180.0° | 60.0° |
N8 | C9 | C10 | H14 | 120.4° | 120.0° |
N8 | C9 | C10 | H15 | 120.3° | 120.0° |
N8 | C9 | C10 | C11 | 176.4° | 180.0° |
N8 | C9 | H14 | H15 | 118.9° | 120.0° |
N8 | C9 | C10 | H16 | 63.0° | 60.0° |
N8 | C9 | C10 | H17 | 55.8° | 60.0° |
C9 | C10 | C11 | H16 | 120.6° | 120.0° |
C9 | C10 | C11 | H17 | 120.6° | 120.0° |
C9 | C10 | C11 | C12 | 174.5° | 180.0° |
C10 | C9 | N8 | H13 | 70.4° | 0.0° |
C10 | C9 | H14 | H15 | 118.9° | 120.0° |
C9 | C10 | H16 | H17 | 118.2° | 120.0° |
C9 | C10 | C11 | H18 | 54.0° | 60.0° |
C9 | C10 | C11 | H19 | 65.1° | 60.0° |
C4 | C5 | C6 | H7 | 119.1° | 120.4° |
C5 | C4 | O4 | H11 | 117.9° | 120.0° |
C4 | C5 | C6 | O6 | 60.8° | 160.1° |
C5 | C4 | C3 | H3 | 66.9° | 58.6° |
C4 | C5 | C6 | H8 | 60.0° | 40.1° |
C4 | C5 | C6 | H9 | 178.4° | 79.9° |
C5 | C4 | O4 | H12 | 57.7° | 179.9° |
C6 | C5 | C4 | O4 | 64.1° | 54.4° |
C5 | C6 | O6 | H8 | 120.8° | 120.0° |
C5 | C6 | O6 | H9 | 120.9° | 120.1° |
C5 | C6 | H8 | H9 | 117.4° | 120.0° |
C5 | C6 | O6 | H10 | 180.0° | 179.9° |
C6 | C5 | C4 | H11 | 54.5° | 65.7° |
O4 | C4 | C3 | H3 | 173.4° | 178.6° |
O4 | C4 | C5 | H7 | 176.6° | 174.9° |
C10 | C11 | C12 | H18 | 120.4° | 120.0° |
C10 | C11 | C12 | H19 | 120.5° | 120.0° |
C11 | C10 | C9 | H14 | 56.0° | 60.0° |
C11 | C10 | C9 | H15 | 63.3° | 60.0° |
C11 | C10 | H16 | H17 | 118.2° | 120.0° |
C10 | C11 | H18 | H19 | 118.7° | 120.0° |
C10 | C11 | C12 | H20 | 180.0° | 60.0° |
C10 | C11 | C12 | H21 | 60.0° | 60.0° |
C10 | C11 | C12 | H22 | 60.0° | 180.0° |
C12 | C11 | C10 | H16 | 64.9° | 60.0° |
C12 | C11 | C10 | H17 | 53.9° | 60.0° |
C12 | C11 | H18 | H19 | 118.6° | 120.0° |
C11 | C12 | H20 | H21 | 120.0° | 119.9° |
C11 | C12 | H20 | H22 | 120.0° | 120.1° |
C11 | C12 | H21 | H22 | 120.0° | 120.0° |
O6 | C6 | C5 | H7 | 58.3° | 39.7° |
O6 | C6 | H8 | H9 | 117.4° | 120.0° |
H1 | O2 | C2 | H2 | 62.3° | 59.9° |
H2 | C2 | C3 | H3 | 169.0° | 178.7° |
H2 | C2 | C1 | H5 | 55.9° | 54.5° |
H2 | C2 | C1 | H6 | 176.9° | 174.9° |
H3 | C3 | O3 | H4 | 61.1° | 59.9° |
H3 | C3 | C4 | H11 | 53.1° | 61.3° |
H7 | C5 | C6 | H8 | 179.1° | 80.2° |
H7 | C5 | C6 | H9 | 62.6° | 159.8° |
H7 | C5 | C4 | H11 | 64.8° | 54.8° |
H8 | C6 | O6 | H10 | 59.2° | 59.9° |
H9 | C6 | O6 | H10 | 59.1° | 60.1° |
H11 | C4 | O4 | H12 | 60.1° | 60.1° |
H13 | N8 | C9 | H14 | 50.0° | 120.0° |
H13 | N8 | C9 | H15 | 169.3° | 120.0° |
H14 | C9 | C10 | H16 | 176.7° | 180.0° |
H14 | C9 | C10 | H17 | 64.5° | 60.0° |
H15 | C9 | C10 | H16 | 57.3° | 60.0° |
H15 | C9 | C10 | H17 | 176.2° | 179.9° |
H16 | C10 | C11 | H18 | 174.6° | 180.0° |
H16 | C10 | C11 | H19 | 55.5° | 60.0° |
H17 | C10 | C11 | H18 | 66.5° | 60.0° |
H17 | C10 | C11 | H19 | 174.3° | 180.0° |
H18 | C11 | C12 | H20 | 59.6° | 180.0° |
H18 | C11 | C12 | H21 | 179.6° | 60.0° |
H18 | C11 | C12 | H22 | 60.4° | 60.0° |
H19 | C11 | C12 | H20 | 59.5° | 60.0° |
H19 | C11 | C12 | H21 | 60.5° | 180.0° |
H19 | C11 | C12 | H22 | 179.5° | 60.0° |
H20 | C12 | H21 | H22 | 120.0° | 120.0° |